mRNA_H-paniculata_contig42692.10916.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig42692.10916.1
Unique NamemRNA_H-paniculata_contig42692.10916.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig42692.10916.1 vs. uniprot
Match: A0A6H5L5U2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5U2_9PHAE)

HSP 1 Score: 262 bits (669), Expect = 6.270e-80
Identity = 145/285 (50.88%), Postives = 188/285 (65.96%), Query Frame = 1
Query:   22 DFNLEVLMLDVQTAFLNAHVKE-VYVRMPGGSECKN-EKRVPLVISLDKPL*GLRHSPKNWHGTIHPFLTELGFKANKSEPCIYVFTSKKNPT*SEATVFLTLYADDLLLLGSDEGLFENLKLQLMRRFKMSDMGDVSLVLGMEMSRDREPGTLTISQENYTQAMVA-YGMEGCNLLSKPGVGPQFSINQPEKQLLDEDGQKKFQGITRSAMYLAQTLRYGIMYAANQLSRTMSTASKAHMAAAEHFLRYLSDTADFTIVNKRGSFKLTAFSDAD*GNNPDNGKS 867
            +FNL    +DV TAFL A ++E V+V  P G E K+ E    +V+ L+K L GL  SP NW  TI P + E+GF A KS+PC+Y++        + A ++LTLY DDLLL G+D      +K +L +RFKM+D+G+ SLVLGME+ RDRE  TLTISQE Y ++++  +GM G    S PG G + S  QPE  LLDE   +K+QGI  S MY+AQ LRY IMYA  QL+R M+  SK HM AA+H LRYL+ T DF+I  K+G FKL  FSD++  NNPDNGKS
Sbjct:   21 EFNLIFDQMDVSTAFLYADIQEEVFVEQPPGFEVKDKEDGGDMVMKLNKSLYGLAQSPGNWFNTIDPVIVEIGFVALKSDPCVYLYDH------NGAKIYLTLYVDDLLLAGNDSDAISMVKGKLQKRFKMTDLGEASLVLGMEIRRDREANTLTISQEAYCKSILERFGMSGSKPTSTPGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKS 299          
BLAST of mRNA_H-paniculata_contig42692.10916.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE)

HSP 1 Score: 266 bits (680), Expect = 9.900e-76
Identity = 146/291 (50.17%), Postives = 191/291 (65.64%), Query Frame = 1
Query:    1 MMLAIATDFNLEVLMLDVQTAFLNAHVKE-VYVRMPGGSECKNEKRVPLVISLDKPL*GLRHSPKNWHGTIHPFLTELGFKANKSEPCIYVFTSKKNPT*SEATVFLTLYADDLLLLGSDEGLFENLKLQLMRRFKMSDMGDVSLVLGMEMSRDREPGTLTISQENYTQAMVA-YGMEGCNLLSKPGVGPQFSINQPEKQLLDEDGQKKFQGITRSAMYLAQTLRYGIMYAANQLSRTMSTASKAHMAAAEHFLRYLSDTADFTIVNKRGSFKLTAFSDAD*GNNPDNGKS 867
            M+  I  +FNL    +DV TAFL A ++E V+V  P G E K++    +V+ L+K L GL  SP NW  TI P L E+GF A KS+PC+Y++        + A ++LTLY DDLLL G+D      +K +L +RFKM+D+G+ SLVLGME+ RDRE  TLTISQE Y ++++  +G+ G    S PG G + S  QPE  LLDE   +K+QGI  S MY+AQ LRY IMYA  QL+R M+  SK HM AA+H LRYL+ T DF+I  K+G FKL  FSD++  NNPDNGKS
Sbjct: 1244 MVACITVEFNLIFDQMDVSTAFLYADIQEEVFVEQPPGFEVKDKDGGDMVMKLNKSLYGLAQSPGNWFNTIDPVLVEIGFVALKSDPCVYLYDH------NGAKIYLTLYVDDLLLAGNDSDAISMVKGKLQKRFKMTDLGEASLVLGMEIRRDREANTLTISQEAYCKSILERFGISGSKPTSTPGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKS 1528          
BLAST of mRNA_H-paniculata_contig42692.10916.1 vs. uniprot
Match: A0A6H5JME8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JME8_9PHAE)

HSP 1 Score: 256 bits (654), Expect = 2.010e-75
Identity = 146/304 (48.03%), Postives = 193/304 (63.49%), Query Frame = 1
Query:    1 MMLAIATDFNLEVLMLDVQTAFLNAHVKE-VYVRMPGGSECKNEKRVPLVISLDKPL*GLRHSPKNWHGTIHPFLTELGFKANKSEPCIYVFTSKKNPT*SEATVFLTLYADDLLLLGSDEGLFENL-----KL--------QLMRRFKMSDMGDVSLVLGMEMSRDREPGTLTISQENYTQAMVA-YGMEGCNLLSKPGVGPQFSINQPEKQLLDEDGQKKFQGITRSAMYLAQTLRYGIMYAANQLSRTMSTASKAHMAAAEHFLRYLSDTADFTIVNKRGSFKLTAFSDAD*GNNPDNGKS 867
            M+  I  +FNL    +DV TAFL A ++E V+V  P G E K++    +V+ L+K L GL  SP NW  TI P L E+GF A KS+PC+Y++        + A ++LTLY DDLLL G+D    ++L     KL        +L +RFKM+D+G+ S  LGM++ RDRE  TLTISQE Y ++++  +GM G    S PG G + S  QPE  LLDE   +K+QGI  S MY+AQ LRY IMYA  QL+R+M+  SK HM AA+H LRYL+ T DF+I  K+G FKL  FSD++  NNPDNGKS
Sbjct:  223 MVACITVEFNLIFDQMDVSTAFLYADIQEEVFVEQPPGFEVKDKDGGDMVMKLNKSLYGLAQSPGNWFNTIDPVLVEIGFVALKSDPCVYLYDH------NGAKIYLTLYVDDLLLAGNDSDAIKHLLSSGWKLGGIARQXGKLQKRFKMTDLGEASFALGMKIRRDREANTLTISQEAYCKSILERFGMSGSKPTSTPGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARSMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKS 520          
BLAST of mRNA_H-paniculata_contig42692.10916.1 vs. uniprot
Match: A0A6H5KNH5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNH5_9PHAE)

HSP 1 Score: 240 bits (612), Expect = 2.660e-67
Identity = 127/243 (52.26%), Postives = 163/243 (67.08%), Query Frame = 1
Query:  142 LVISLDKPL*GLRHSPKNWHGTIHPFLTELGFKANKSEPCIYVFTSKKNPT*SEATVFLTLYADDLLLLGSDEGLFENLKLQLMRRFKMSDMGDVSLVLGMEMSRDREPGTLTISQENYTQAMVA-YGMEGCNLLSKPGVGPQFSINQPEKQLLDEDGQKKFQGITRSAMYLAQTLRYGIMYAANQLSRTMSTASKAHMAAAEHFLRYLSDTADFTIVNKRGSFKLTAFSDAD*GNNPDNGKS 867
            +V+ L+K L GL  SP NW  TI P L E+GF A KS+PC+Y++        + A ++LTLY DDLLL G+D      +K +L +RFKM+D+G+ SLVL ME+ RDRE  TLTISQE Y ++++  +GM G    S PG G + S  QPE  LLDE   +K+QGI  S MY+AQ LRY IMYA  QL+R M+  SK HM AA+H LRYL+ T DF+I  K+G FKL  FSD++  NNPDNGKS
Sbjct:  623 MVMKLNKSLYGLAQSPGNWFNTIDPVLVEIGFVALKSDPCVYLYDH------NGAKIYLTLYVDDLLLAGNDSDAISMVKGKLQKRFKMTDLGEASLVLRMEIRRDREANTLTISQEAYCKSILERFGMSGSKPTSTPGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKS 859          
BLAST of mRNA_H-paniculata_contig42692.10916.1 vs. uniprot
Match: A0A6H5J842_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J842_9PHAE)

HSP 1 Score: 241 bits (614), Expect = 6.290e-67
Identity = 137/291 (47.08%), Postives = 183/291 (62.89%), Query Frame = 1
Query:    1 MMLAIATDFNLEVLMLDVQTAFLNAHVKE-VYVRMPGGSECKNEKRVPLVISLDKPL*GLRHSPKNWHGTIHPFLTELGFKANKSEPCIYVFTSKKNPT*SEATVFLTLYADDLLLLGSDEGLFENLKLQLMRRFKMSDMGDVSLVLGMEMSRDREPGTLTISQENYTQAMVA-YGMEGCNLLSKPGVGPQFSINQPEKQLLDEDGQKKFQGITRSAMYLAQTLRYGIMYAANQLSRTMSTASKAHMAAAEHFLRYLSDTADFTIVNKRGSFKLTAFSDAD*GNNPDNGKS 867
            M+  I  +FNL    +DV TAFL A ++E V+V  P G E K++    +V+ L+K L GL  SP NW  TI P L E+GF A KS+PC+Y++        + A ++LTLY DDLLL G+D      +K +L +RFKM+D+G+ SLVLGME+ RDRE  TLTISQE Y ++++  +GM G    S PG G + S  QP+  LLDE   +K+QGI  S MY+A   +Y        L+R M+  SK HM AA+H LR+L  T DF+I  K+G FKL  FSD++  NNPDNGKS
Sbjct: 1409 MVACITVEFNLIFDQMDVSTAFLYADIQEEVFVEQPPGFEVKDKDGGDMVMKLNKSLYGLAQSPGNWFNTIDPVLVEIGFVALKSDPCVYLYDH------NGAKIYLTLYVDDLLLAGNDSDAISMVKGKLQKRFKMTDLGEASLVLGMEIRRDREANTLTISQEAYCKSILERFGMSGSKPTSTPGYGSEISNIQPDYTLLDEKETRKYQGIVGSPMYIAHXDQY------TWLARPMAKPSKVHMVAAKHTLRFLVGTIDFSITYKKGGFKLATFSDSNWANNPDNGKS 1687          
BLAST of mRNA_H-paniculata_contig42692.10916.1 vs. uniprot
Match: A0A6H5KL37_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL37_9PHAE)

HSP 1 Score: 234 bits (596), Expect = 9.040e-66
Identity = 128/266 (48.12%), Postives = 169/266 (63.53%), Query Frame = 1
Query:    1 MMLAIATDFNLEVLMLDVQTAFLNAHVKE-VYVRMPGGSECKNEKRVPLVISLDKPL*GLRHSPKNWHGTIHPFLTELGFKANKSEPCIYVFTSKKNPT*SEATVFLTLYADDLLLLGSDEGLFENLKLQLMRRFKMSDMGDVSLVLGMEMSRDREPGTLTISQENYTQAMVA-YGMEGCNLLSKPGVGPQFSINQPEKQLLDEDGQKKFQGITRSAMYLAQTLRYGIMYAANQLSRTMSTASKAHMAAAEHFLRYLSDTADFTIV 792
            M+  IA  FNLE+  +DV TAFL A + E V+V  P G E K++    LV+ L K L GL  SP NW  TI PFL E+GF   KS+ C+Y++         +  V+LTLY DDLLL G++      +K +L +RFKM+DMG+V LVLGME+ RDR  GTLTISQE Y+++++  +GM  C   S PG G + S  QPE  LL E+  +++QGI    +Y+AQ LRY IMYA  QL+R M+  SK HM AA+H LRY++ T DF I 
Sbjct:  552 MLACIAVQFNLELDQMDVSTAFLYADILENVFVEQPPGFEVKDKDGGDLVMQLQKSLYGLAQSPSNWFHTIDPFLVEIGFVPLKSDTCVYLYDH------DDVQVYLTLYVDDLLLAGNNSRAISMIKKKLTQRFKMTDMGEVKLVLGMEIKRDRNQGTLTISQEAYSKSILERFGMSECKPTSTPGYGSELSNKQPEDTLLSEEETRRYQGIVGCLIYIAQVLRYDIMYATGQLTRPMAKPSKIHMVAAKHTLRYVAGTTDFRIT 811          
BLAST of mRNA_H-paniculata_contig42692.10916.1 vs. uniprot
Match: A0A6H5JF46_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF46_9PHAE)

HSP 1 Score: 223 bits (568), Expect = 1.990e-62
Identity = 125/292 (42.81%), Postives = 178/292 (60.96%), Query Frame = 1
Query:    1 MMLAIATDFNLEVLMLDVQTAFLNAHV-KEVYVR-MPGGSECKNEKRVPLVISLDKPL*GLRHSPKNWHGTIHPFLTELGFKANKSEPCIYVFTSKKNPT*SEATVFLTLYADDLLLLGSDEGLFENLKLQLMRRFKMSDMGDVSLVLGMEMSRDREPGTLTISQENYTQAMVA-YGMEGCNLLSKPGVGPQFSINQPEKQLLDEDGQKKFQGITRSAMYLAQTLRYGIMYAANQLSRTMSTASKAHMAAAEHFLRYLSDTADFTIVNKRGSFKLTAFSDAD*GNNPDNGKS 867
            M+ AIA +   EV  LDV  AFLNA+  ++VYVR  PG  E        +V  L+K L GL  SP  W+  I+  L   G++  +S+PC+Y+F S       +    L +Y DD+L+ G ++ +    K +LM  F+M+DMG+V  V+G+E+ RD E GTL ISQ  Y + ++  YGME  N +S PG G + S  QP+ QLL  + +++FQ IT S +YLAQ  RY + YA +QL+R  +  ++ HMAAA+H LRYL  T D  IV K+G F+L+ F+D+  G NPDNG+S
Sbjct:  312 MLFAIACEHGWEVYQLDVVAAFLNAYTDRDVYVRPAPGDEERDPTTGEMMVYKLEKSLYGLSQSPSLWNDAINDRLIIFGWQRTRSDPCVYIFVS------GDELTILAIYVDDILITGGNKEIVSRKKKELMDSFEMTDMGEVKRVIGIEVQRDYEHGTLAISQGPYARDILQRYGMEQANPVSTPGYGVELSTEQPQDQLLGPEDKQRFQAITGSLLYLAQCTRYDLSYAVHQLTRACANPAQVHMAAAKHLLRYLRGTPDLPIVYKKGKFRLSCFTDSSFGANPDNGRS 597          
BLAST of mRNA_H-paniculata_contig42692.10916.1 vs. uniprot
Match: A0A6H5KE92_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE92_9PHAE)

HSP 1 Score: 222 bits (565), Expect = 2.490e-61
Identity = 125/289 (43.25%), Postives = 176/289 (60.90%), Query Frame = 1
Query:   10 AIATDFNLEVLMLDVQTAFLNAHV-KEVYVRMPGGSECKNEKR-VPLVISLDKPL*GLRHSPKNWHGTIHPFLTELGFKANKSEPCIYVFTSKKNPT*SEATVFLTLYADDLLLLGSDEGLFENLKLQLMRRFKMSDMGDVSLVLGMEMSRDREPGTLTISQENYTQAMVA-YGMEGCNLLSKPGVGPQFSINQPEKQLLDEDGQKKFQGITRSAMYLAQTLRYGIMYAANQLSRTMSTASKAHMAAAEHFLRYLSDTADFTIVNKRGSFKLTAFSDAD*GNNPDNGKS 867
            AI    N  +  LDV  AFLNA   ++VYVR   G+  KN     P+V  L++ L GL  SP  W+ T+   LT  G+K  +S+PC+YV+TS          V LT+Y DD+L+ G D+ L +  K +L  RF+M+DMG+V  +LG+++ RD E GTL ISQE+Y   ++  +GM+  N +S PG G + S NQP+ Q+L    +K +Q +T S +YLAQ  R+ + YAA QLS+  S  ++ +M AA+H LRYL       IV KRG F+L AF+D+  G NPDNG+S
Sbjct:  438 AIGCHNNWPIYQLDVVGAFLNALCDRDVYVRPAPGTSAKNSATGEPMVYKLERSLYGLSQSPALWNDTLDESLTVFGWKRTQSDPCVYVYTS------GNIIVILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQDQILGPTDKKIYQSMTGSILYLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPVLPIVYKRGQFRLAAFTDSSFGANPDNGRS 720          
BLAST of mRNA_H-paniculata_contig42692.10916.1 vs. uniprot
Match: A0A6H5KHG5_9PHAE (Uncharacterized protein n=11 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHG5_9PHAE)

HSP 1 Score: 224 bits (570), Expect = 4.310e-61
Identity = 125/292 (42.81%), Postives = 179/292 (61.30%), Query Frame = 1
Query:    1 MMLAIATDFNLEVLMLDVQTAFLNAHV-KEVYVR-MPGGSECKNEKRVPLVISLDKPL*GLRHSPKNWHGTIHPFLTELGFKANKSEPCIYVFTSKKNPT*SEATVFLTLYADDLLLLGSDEGLFENLKLQLMRRFKMSDMGDVSLVLGMEMSRDREPGTLTISQENYTQAMVA-YGMEGCNLLSKPGVGPQFSINQPEKQLLDEDGQKKFQGITRSAMYLAQTLRYGIMYAANQLSRTMSTASKAHMAAAEHFLRYLSDTADFTIVNKRGSFKLTAFSDAD*GNNPDNGKS 867
            M+ AIA +   EV  LDV  AFLNA+  ++VYVR  PG  E        +V  L+K L GL  SP  W+  I+  L   G++  +S+PC+Y+F S       +    L +Y DD+L+ G ++ +  + K +LM  F+M+DMG+V  V+G+E+ RD E GTL ISQ  Y + ++  YGME  N +S PG G + S  QP+ QLL  + +++FQ IT S +YLAQ  RY + YA +QL+R  +  ++ HMAAA+H LRYL  T D  IV K+G F+L+ F+D+  G NPDNG+S
Sbjct: 1091 MLFAIACEHGWEVYQLDVVAAFLNAYTDRDVYVRPAPGDEERDPTTGEMMVYKLEKSLYGLSQSPSLWNDAINDRLIIFGWQRTRSDPCVYIFVS------GDELTILAIYVDDILITGGNKEIVSSKKKELMDSFEMTDMGEVKRVIGIEVQRDYEHGTLAISQGPYARDILQRYGMEQANPVSTPGYGAELSTEQPQDQLLGPEDKQRFQAITGSLLYLAQCTRYDLSYAVHQLTRACANPAQVHMAAAKHLLRYLRGTPDLPIVYKKGQFRLSCFTDSSFGANPDNGRS 1376          
BLAST of mRNA_H-paniculata_contig42692.10916.1 vs. uniprot
Match: A0A6H5KQD0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQD0_9PHAE)

HSP 1 Score: 214 bits (544), Expect = 6.530e-61
Identity = 123/289 (42.56%), Postives = 173/289 (59.86%), Query Frame = 1
Query:   10 AIATDFNLEVLMLDVQTAFLNAHV-KEVYVRMPGGSECKNEKR-VPLVISLDKPL*GLRHSPKNWHGTIHPFLTELGFKANKSEPCIYVFTSKKNPT*SEATVFLTLYADDLLLLGSDEGLFENLKLQLMRRFKMSDMGDVSLVLGMEMSRDREPGTLTISQENYTQAMVA-YGMEGCNLLSKPGVGPQFSINQPEKQLLDEDGQKKFQGITRSAMYLAQTLRYGIMYAANQLSRTMSTASKAHMAAAEHFLRYLSDTADFTIVNKRGSFKLTAFSDAD*GNNPDNGKS 867
            AI    N  +  LDV  AFLNA   + VYVR   G+  KN     P+V  L++ L GL  SP  W+ T+   LT  G+K  +S+PC+YV+TS          V LT+Y DD+L+ G D+ L +  K +L  RF+M+DMG+V  +LG+++ RD E GTL ISQE+Y    +  +GM+  N +S  G G + S NQP+ Q+L    +K +Q +T S +YLAQ  ++ + YAA QLS+  S  ++ +M AA+H LRYL       IV KRG F+L AF+D+  G NPDNG+S
Sbjct:   74 AIGCHNNWPIYQLDVVGAFLNALCDRYVYVRPAPGTSAKNSATGEPMVYKLERSLYGLSQSPALWNDTLDESLTVFGWKRTQSDPCVYVYTS------GNIIVILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTRLERFGMQEANPVSTLGYGAEISTNQPQDQILGPTDKKIYQSMTGSILYLAQCTQFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPVLPIVYKRGQFRLAAFTDSSFGANPDNGRS 356          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig42692.10916.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L5U2_9PHAE6.270e-8050.88Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KJH6_9PHAE9.900e-7650.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JME8_9PHAE2.010e-7548.03Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KNH5_9PHAE2.660e-6752.26Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5J842_9PHAE6.290e-6747.08Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5KL37_9PHAE9.040e-6648.12Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JF46_9PHAE1.990e-6242.81Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KE92_9PHAE2.490e-6143.25Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KHG5_9PHAE4.310e-6142.81Uncharacterized protein n=11 Tax=Ectocarpus sp. CC... [more]
A0A6H5KQD0_9PHAE6.530e-6142.56Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig42692contigH-paniculata_contig42692:359..1571 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score84.3
Seed ortholog evalue5.1e-14
Seed eggNOG ortholog698440.XP_007296447.1
Hectar predicted targeting categoryother localisation
GOsGO:0000943,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0003887,GO:0003964,GO:0004518,GO:0004540,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006139,GO:0006259,GO:0006278,GO:0006508,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0009058,GO:0009059,GO:0009987,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0016787,GO:0016788,GO:0018130,GO:0019438,GO:0019538,GO:0032196,GO:0032197,GO:0034061,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0071704,GO:0071897,GO:0090304,GO:0090305,GO:0090501,GO:0097159,GO:0140096,GO:0140097,GO:0140098,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901576
EggNOG free text desc.polyprotein is processed to make a nucleocapsid-like protein (Gag), reverse transcriptase (RT), protease (PR), and integrase (IN)
EggNOG OGs39YUU@33154,3P1DN@4751,3QRDY@4890,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelAscomycota
Best eggNOG OGNA|NA|NA
Exons1
Model size1213
Cds size450
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig42692.10916.1prot_H-paniculata_contig42692.10916.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig42692 749..1198 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930297.6924682-UTR-H-paniculata_contig42692:358..7481622930297.6924682-UTR-H-paniculata_contig42692:358..748Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig42692 359..748 +
1691481230.6415155-UTR-H-paniculata_contig42692:358..7481691481230.6415155-UTR-H-paniculata_contig42692:358..748Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig42692 359..748 +
1622930297.7684667-UTR-H-paniculata_contig42692:1198..15711622930297.7684667-UTR-H-paniculata_contig42692:1198..1571Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig42692 1199..1571 +
1691481230.6754854-UTR-H-paniculata_contig42692:1198..15711691481230.6754854-UTR-H-paniculata_contig42692:1198..1571Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig42692 1199..1571 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930297.7464259-CDS-H-paniculata_contig42692:748..11981622930297.7464259-CDS-H-paniculata_contig42692:748..1198Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig42692 749..1198 +
1691481230.6637309-CDS-H-paniculata_contig42692:748..11981691481230.6637309-CDS-H-paniculata_contig42692:748..1198Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig42692 749..1198 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig42692.10916.1

>prot_H-paniculata_contig42692.10916.1 ID=prot_H-paniculata_contig42692.10916.1|Name=mRNA_H-paniculata_contig42692.10916.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=150bp
MRRFKMSDMGDVSLVLGMEMSRDREPGTLTISQENYTQAMVAYGMEGCNL
LSKPGVGPQFSINQPEKQLLDEDGQKKFQGITRSAMYLAQTLRYGIMYAA
NQLSRTMSTASKAHMAAAEHFLRYLSDTADFTIVNKRGSFKLTAFSDAD*
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mRNA from alignment at H-paniculata_contig42692:359..1571+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig42692.10916.1 ID=mRNA_H-paniculata_contig42692.10916.1|Name=mRNA_H-paniculata_contig42692.10916.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1213bp|location=Sequence derived from alignment at H-paniculata_contig42692:359..1571+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATGCTAGCAATCGCGACCGACTTCAACCTTGAAGTGCTGATGCTTGA CGTTCAGACGGCCTTTCTGAATGCCCATGTCAAGGAGGTGTATGTGAGGA TGCCTGGAGGTTCTGAGTGCAAGAACGAGAAGAGAGTTCCACTCGTAATC AGTCTCGACAAGCCCCTGTAGGGTTTAAGGCATTCACCCAAAAATTGGCA CGGAACCATCCACCCCTTCCTCACGGAACTCGGGTTTAAGGCAAACAAGT CGGAGCCCTGCATCTACGTCTTCACCAGCAAGAAAAATCCTACTTAATCG GAAGCTACGGTCTTCCTCACCCTCTATGCGGATGACTTACTTTTGCTCGG CTCGGATGAGGGCCTCTTCGAAAATCTCAAATTACAATTGATGAGGCGTT TCAAGATGTCGGACATGGGCGACGTATCGCTGGTGCTGGGCATGGAGATG TCTAGGGACCGCGAGCCAGGGACGCTGACCATCAGCCAGGAGAACTACAC CCAGGCGATGGTGGCCTACGGTATGGAGGGGTGCAACCTCCTGAGCAAAC CCGGCGTCGGGCCGCAGTTTTCAATAAACCAACCGGAGAAGCAACTTCTG GACGAGGACGGTCAGAAGAAGTTCCAGGGGATCACGCGGTCGGCTATGTA CCTGGCACAGACTCTCCGCTACGGCATCATGTACGCCGCCAATCAGCTGT CGCGGACGATGTCAACAGCGTCCAAGGCGCACATGGCGGCGGCGGAACAC TTTCTTCGCTACCTATCGGACACCGCGGACTTCACTATCGTAAACAAGCG CGGAAGCTTTAAGCTGACAGCGTTTTCAGACGCTGACTAGGGCAACAATC CGGACAACGGCAAGTCAAACGTCATCGTACGTCATAATGACGGCCAACGC CCCGGTGAGCTTCAAGGTGGGACAACAGGGAATCACTGCGCAATCTACGA TGGAGGCAGAACTCGTGATAGCAGCGCTGACCATGAAGGAGGTAGTGTAC TGCTCTAACAGAATGGTGAAGCTGGAATTCGAAGCGGCGTTCAATAGCGT GCCGGTGTTGGTGGACATCACATCGGTATTGCACGTGGCCGAAAACCAAA CATACTCGCCGACGGTCAAACACGTGGCTCTTCGTTTCTTCATCAACGAA CCGGTGGAGATGGTAAAGATCACCATCCATTGCATCACAACCGAGGATCA GATCGCGGACGTC
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Coding sequence (CDS) from alignment at H-paniculata_contig42692:359..1571+

>mRNA_H-paniculata_contig42692.10916.1 ID=mRNA_H-paniculata_contig42692.10916.1|Name=mRNA_H-paniculata_contig42692.10916.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=900bp|location=Sequence derived from alignment at H-paniculata_contig42692:359..1571+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGGCGTTTCAAGATGTCGGACATGGGCGACGTATCGCTGGTGCTGGG
CATGGAGATGTCTAGGGACCGCGAGCCAGGGACGCTGACCATCAGCCAGG
AGAACTACACCCAGGCGATGGTGGCCTACGGTATGGAGGGGTGCAACCTC
CTGAGCAAACCCGGCGTCGGGCCGCAGTTTTCAATAAACCAACCGGAGAA
GCAACTTCTGGACGAGGACGGTCAGAAGAAGTTCCAGGGGATCACGCGGT
CGGCTATGTACCTGGCACAGACTCTCCGCTACGGCATCATGTACGCCGCC
AATCAGCTGTCGCGGACGATGTCAACAGCGTCCAAGGCGCACATGGCGGC
GGCGGAACACTTTCTTCGCTACCTATCGGACACCGCGGACTTCACTATCG
TAAACAAGCGCGGAAGCTTTAAGCTGACAGCGTTTTCAGACGCTGACTAG
ATGAGGCGTTTCAAGATGTCGGACATGGGCGACGTATCGCTGGTGCTGGG
CATGGAGATGTCTAGGGACCGCGAGCCAGGGACGCTGACCATCAGCCAGG
AGAACTACACCCAGGCGATGGTGGCCTACGGTATGGAGGGGTGCAACCTC
CTGAGCAAACCCGGCGTCGGGCCGCAGTTTTCAATAAACCAACCGGAGAA
GCAACTTCTGGACGAGGACGGTCAGAAGAAGTTCCAGGGGATCACGCGGT
CGGCTATGTACCTGGCACAGACTCTCCGCTACGGCATCATGTACGCCGCC
AATCAGCTGTCGCGGACGATGTCAACAGCGTCCAAGGCGCACATGGCGGC
GGCGGAACACTTTCTTCGCTACCTATCGGACACCGCGGACTTCACTATCG
TAAACAAGCGCGGAAGCTTTAAGCTGACAGCGTTTTCAGACGCTGACTAG
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