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Homology
BLAST of mRNA_H-paniculata_contig4267.10910.1 vs. uniprot
Match: D7G502_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G502_ECTSI) HSP 1 Score: 207 bits (526), Expect = 7.340e-59 Identity = 157/366 (42.90%), Postives = 186/366 (50.82%), Query Frame = 2
Query: 218 RTCLFCTYCYVLLGRHTHGFFTPLGGVRQVRARARTRVSLTVAAPRCSVRKCSRRNLLRLAGTPAGNGGNGGAAAAEDGSLGANIGLED-AGIRRAPLRITPNIQPHDKRRPKTDVIRDLATNPAFLTDESFDMFALAWAEFTDWSRRTVNRNVAGVPFEFDIRQWCSSARKWWLRMVEMDVQAKADFFRLYEQGMHDRDAWGNQAVKVDARVEDEWDNIYVECQDC---------FDGG-RGGTXXXXXXXXXXXXXXXXXXXXXSKENAAREGAGAALPAYMSSSTGAAMSSARDRDSTLRFSSTLDLGFEAIFAGEDEEEEEGTLGEGXXXXXXXXXEERDDGDEEIIDCAIRGKWYFKDNDD 1282
RTCL L G GF T L R TR +T RC V + + L P G G AAA D + GAN L+ +GI RAPLRITPN QP +KRRPK +V +D+ T AFLT+ESFD+ A+AW EF+D+ RRTV RN+ G F+FD RQW SS RKWW R VEMDVQAKAD FRLY+ + RDA GNQA+KVDARVEDEWD+IYV+CQD FD GG + +EG G GA+ SA S + +D E E GT EG DEEIIDCAIRG+W F +NDD
Sbjct: 2 RTCLLSAALLFLGG--AQGFITSL-------PRLPTR-DITPTPGRCRVPRLA----LTPPRKPNTGAGAGSAAAGGDDNGGANDVLKSTSGITRAPLRITPNFQPQEKRRPKFNVDKDV-TYGAFLTEESFDIAAMAWEEFSDFLRRTVERNLNGAQFDFDTRQWSSSIRKWWSRAVEMDVQAKADLFRLYDSSVGQRDARGNQALKVDARVEDEWDSIYVDCQDVADVDFQDWSFDSSISGGVEGAATGSDVTGWRSSESSSEALPSSLRKEGGG----------WGASPGSASTGGSRSALMAAMDAFQEEXXXXXXXXE--GTGSEGFD-------------DEEIIDCAIRGRWTFTNNDD 327
BLAST of mRNA_H-paniculata_contig4267.10910.1 vs. uniprot
Match: A0A836CM36_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CM36_9STRA) HSP 1 Score: 100 bits (248), Expect = 8.280e-21 Identity = 57/141 (40.43%), Postives = 77/141 (54.61%), Query Frame = 2
Query: 503 PLRITPNIQPHDKRRPKTDVIRDLAT--NPAFLTDESFDMFALAWAEFTDWSRRTVNRNVAGVPFEFDIRQWCSSARKWWLRMVEMDVQAKADFFRLYEQGMHDRDAWGNQAVKVDARVEDEWDNIYVECQDCFDGGRGGT 919
PLRI N P P+T + RD ++ N A + + +LA+AEF DW++RT+ RN+ G FEFD RQW ++ KWW R +E D AK +F Y + + R G A A E+EW NIY +C C GG GG
Sbjct: 6 PLRIQANFAPI---APRTLLSRDSSSYQNAAQVERSLEPIASLAYAEFRDWTQRTMARNLEGHAFEFDRRQWQTAIAKWWQRALEADEAAKLEFAAQYNRIVAGR---GGDAFDTGAAAEEEWGNIYFDCSSCLGGGAGGV 140
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | signal peptide |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-04_002390.1 |
| Exons | 4 |
| Model size | 1504 |
| Cds size | 1095 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig4267.10910.1 >prot_H-paniculata_contig4267.10910.1 ID=prot_H-paniculata_contig4267.10910.1|Name=mRNA_H-paniculata_contig4267.10910.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=365bp
MQRTCLFCTYCYVLLGRHTHGFFTPLGGVRQVRARARTRVSLTVAAPRCS
VRKCSRRNLLRLAGTPAGNGGNGGAAAAEDGSLGANIGLEDAGIRRAPLR
ITPNIQPHDKRRPKTDVIRDLATNPAFLTDESFDMFALAWAEFTDWSRRT
VNRNVAGVPFEFDIRQWCSSARKWWLRMVEMDVQAKADFFRLYEQGMHDR
DAWGNQAVKVDARVEDEWDNIYVECQDCFDGGRGGTNNNLQQQEQQEQQQ
KQQQPPRSKENAAREGAGAALPAYMSSSTGAAMSSARDRDSTLRFSSTLD
LGFEAIFAGEDEEEEEGTLGEGDDADSDGQGEERDDGDEEIIDCAIRGKW
YFKDNDDQPHFSPQ* back to topmRNA from alignment at H-paniculata_contig4267:5888..11752- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig4267.10910.1 ID=mRNA_H-paniculata_contig4267.10910.1|Name=mRNA_H-paniculata_contig4267.10910.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5865bp|location=Sequence derived from alignment at H-paniculata_contig4267:5888..11752- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGATACACCGGCTGACTACACGACTCTCTCGGGTCTCAAGGGTTACTC
CATCCGCTCCGTCCCTGAACCCAATCCTTCACCTCGTTCCTTCTCTCTTC
CCCTGTCTCACGAAACAGCAGGAGATAACGCTGCAGACAGAAAGTAACAA
CGAACACGGAAAAAGGGCTAGTTTCAAGTTTTACTACTGACGCTGTCTCT
ATACACGACAAATGCAACGCACTTGCTTGTTCTGCACGTACTGCTACGTC
CTTCTGGGACGACACACGCACGGCTTCTTCACACCGCTGGGCGGTGTGCG
ACAAGTACGTGCGCGAGCACGCACGCGGGTATCCCTCACCGTTGCCGCGC
CGCGATGTTCAGTGAGGAAATGCAGCAGGAGGAATCTTCTTAGGCTTGCG
GGAACGCCGGCAGGCAACGGAGGTAACGGGGGCGCAGCGGCGGCAGAAGA
TGGATCACTTGGAGCCAATATTGGCTTGGAGGATGCTGGGATAAGGCGTG
CCCCGCTACGGATAACACCTAATATCCAGCCCCACGACAAACGGCGACCT
AAGACCGATGTAATTCGGGACCTCGCAACCAACCCGGCGTTTCTAACGGA
CGAGAGCTTTGATATGTTTGGTGGGTTCTTGTGAGCAATCCTTCAGGGCA
TGACTTCGTAATCATGTACATGTTCTCTTGAAACTGGACGGTATTTGTAA
CTGTCTTCCGTGTATGAAACGAAACACAGAACATGACTTGTCAAGAGGAC
ACATCAGTTCAGTCTACATAGCCAGATAGCAGCCAGAATAAGCACAGCAG
TTCACTTTCACATCCATCTTCGCAAAAAATTGATGTGGTGGCTTCGGGTT
TTCATGCACCGGAATGATGTGTCGTGTGTCACCAACGATATTTGCAGTCA
GTAGTTCCAACCGACTCAGTTGACAAAGCCAGACAGTCAGTGGAAAGTAA
ATAGTTGACAAACACAGCAGCATTCACCTTGTCATTCGTTTTATTATTAG
TACAAATGTGATAATCAATAGCCTTTGGTTGTCTTGGGTAGGAATGACGT
GTCGCGCGTCATCGAAGATATTTGCAACAGCAGTAGCCACAATAGTGCCA
CACCTCTATGCGTGCACTAATATACTCTGGTATTACCTCTTGTGTTGGAG
TTATGTCCCACCTAGACCGGAACTGTGAAAGCATAAGACATGAACATGAA
CGATGCTATTTTAGTATGGCACTACCTATTAACATGTGACTGTTGGTGCA
ATTTGTCGGACAATACGCCCAACGTCACTGCACAATTTTCAATAATTTCT
GCTGCGCCTGCTGCAAATGTTGAAGTATTTAGCAGCGCATGTACCCTCCT
CGCGTTGTCAAATAGTTAGGACACCAAGAGTGGTCAAGCGTTTTCACAGT
TGCCGAAAGTGTTTTGGGGGGCGGTGGTCGCGATCCTTGTCATTCGTACG
GTACGTCACCCCTAGTCTATTGGAGTACAAGAACGGCATCGTGGCATTGT
GTCACAGCGCTATTGCAAAAGTTCTCCTGCCGCACATGGCACGGTGTGTG
CGATAGCTGCGCAGCGCTGTGACTGGCGCACAAAGTTGTCGAAGTGCACA
AGGTAACAGCACGGTGGGTGTCCAGCGTTTGCTACACGTCCAGCTCGAGT
GTTTTTCTCGTTGTCGACTCCCCCAAATTATGTTCGACGAATCCTGTTGG
TCATGAATAGAGTCGTCCAATACAGTCGACACAGAGTACTTTATCCCGTA
ATTGTGCAATAAACCTCAAGGCCTTTCCGCACCCCCTGGGCTGCTATCGG
AAACAGCCTTGTGCGCCTTGTTAGTGGATTGGAGTCGTGACAAGCGAGTT
TGACAGCTTGACCGTACTGTAGCGGAAGCTCGACTATCTATGTATTACTT
GAATATAGGTATCATTCACAGACGACCTTGTCATTGAGAGTATAGAGCAT
GGCAATGGTATGCAGATAATATCTTTAAACGCGGCGCGTGCAAACCCACA
CACGTATCGCCTGTTGTAGCAGGCTCGCTCAATCTTGTTGCCATCCCCGG
GATTGCGCTAGCAACTCTAAGGTACTGACTCTGTTGGCATGTACGATGCG
TAACTGTCCCTTTGAAAGGCCAACTGCTAGTGGTTGCATTCGTGGTTTGG
ACCGAACTTGCCGAGTTTTAAAAATTATGTCCACATAGTGAAATTATTTG
TTATTTCAAGGGTCCGTTGACTATAGCTAACGGAGATGCCAATTGCCGAA
CCTCTTCTCGTGGGAATGTTGAGAGTGCGGACGTAAAACCCGGTTTAGGC
ACCATCGTTCGTTTTTCATGAAATTCACACACACGATGTTATGCAATCCT
TGAAAATCCAGCTTGATAGCCCTAGCCCCGTATGACTTTACGCCCCCCAT
ATAGTTGAGCCACATTTGGCAACGTAGGAAAAAGCGATTGGCCACCGGAA
ATCTCCCTGATGGGAACGAAGCTTCGTCTTCCCGAGGATGCATGGTCAAT
GGCGAAAAAACTACGGTACGCAAAACATGAAAACGCGCCCCATACCAGCG
GCAGGCAGGCTTGCACATCTACTGCGACACTAGTCTTCTTGCCGGATCCG
TGAGCCTCACAAATCGCACGTCGTCGCTCTGGATGGGCAACCGTGTCCAG
CATCATTTGGCGATTCTGAGCTGCCCTCTTTTCGGATTCCTCTTGGATTT
TTGTGCTATGTGATAACCGACGATATGTAATTGGAGAGGAAACGGACGAT
GTGGACGATATCGACCCGTCACGACTTTGTTGTGCGCTTTGTCTGCAACC
GTGGAGAACGCTCTTGAATCGTTTCAAACTTGATCATCATCTATCAGAGA
ACAGCCGTACACAATTATATGGCATATTTGGTCGAACGGGTGGAGGTATC
CACGGCAACAGCCGCCAGGAAGGCGTCGTGGGTACACACCGCTCGGCCAA
CACCATCTGTGGTGGATAATGACCGAGTTTGAACCGTTTCCAGAGTATTC
AGAGCGTTCCATCCCGATCGTACGCGATCTGCCCATTCCCCTCCCCACGC
TTGCGGACGGAAAAGCACAATGAAGATTGCAGTCGACGTCGTTCTGAAGT
CCTCACTGGTATTATTGATGGGCTCGGAAGGGCCAAATTCTCCTTGATGT
GTGCTGAAACGTGTGCATGTATGTTTCGTCACGCATGTGTGCACAACCCA
CCATTGCCCAGCACTCCCTGCAACCCATTGTACCCACTATGACCTGTCGT
TATTGCGGTGCGGCATCGCTCTAGCACTTTCGCCCTACTTGAGAATATCA
GTCTCGAGCGCTGGTCGTGCTCTCACAAGCATTTTGGTCGTACGCATAGA
CTGACTGCTCAGGTATGGGCAAGGCTTCCTCTTGTGTGCAGTGTTGTGTT
ATCGTCAGACCTCCGCACGCCCAGCAGCTACTGAAAAAGCCAACGGATCC
TATCTCCACCTGTTTCGTCGTGTGCTCTCAAACCATGCCCAGAAAGATCA
GCGAAGAAGCAGACTGAATCTCTTCAACGGGCTGCTGGTCGAGGTTTTGT
ACATACTTGGATTCCATCATTATAGGGTGGGGATGCCTCGTTTTCCCACC
CGTAAAGTACACTTGAATATGCCTACCTAACATGTGATTTAACACAGAGC
CACATATTAAATCTCGTAAAAACCCAAGTGTTGCAATTTGTCAGGGTCAT
CTTTTAACACGCAAACTTTCAAATTTATCCCCTAGGTGTACAAGCTGTCT
TTCTTTATAGATCTGCTCGCACCCTGCCCCTCCCCCCCCCCGCGCGCGCA
CCCCCGCGCACCCCTCTACCCCTGCCGTTCTTTTCATCATCCGATGCACG
GTTGTTTTACGGTGCTTAATCGGCAGCCCTGGCCTGGGCAGAGTTCACGG
ATTGGTCGAGGCGCACAGTAAACCGGAATGTAGCAGGCGTCCCTTTCGAG
TTTGACATCCGCCAATGGTGCAGCAGCGCGCGCAAGTGGTGGCTTCGTAT
GGTGGAGATGGACGTTCAGGCGAAGGCGGTGAGACGGAGGAATCTCCTTT
TTGGTGTTGGCGTTCCATCTACGTTATTTATTTTCTACTACGGGGAGTGA
AAACATGTATGTTAAGGGACGTGTGCTCGACTGATGATGAATTTCTGCCA
ATCGGGGTGGGTGGTGACTTTGAGAGGCACTTATTTTTCAATCCCAGAGC
GAGAAAGTGTTGTGTACGAGATAAGCGCATGGTCGTGTGGGGGGTTGGCG
TGAGTACGTCGGTTTCGTGGCGCACGAAGAAAACCCCACATGTGTGGGTT
TGCAGGGTGAGGCGTAGAATATGTCCGCTCCGTGAAATAACTGCCCTTGC
ATGTACGTGATAGACCTACCCACCTTGAAATTGCAAGAAAAAACTCTACC
GAGAATACCGAATCATGCCAGCATATGCTTGCAATTGCCTCTAACACGGG
TGTTGTCTCGGAGTCGTTACACTCACTCGTAATTTGAGTTTTAATTGTGT
TGGGTACATATACTATTTAACATTTTTTCCTCGTGTTCTGCACTTCTGCT
GTCCTGTCTACTAATTTTACAGTAAATGTGATCCAAAAAACAAAACTAAA
TAAACCTTGATGGTTTTGGCGTTGCTTGAATAGGATTTCTTCCGATTATA
CGAGCAAGGCATGCACGACCGGGATGCGTGGGGAAACCAAGCCGTGAAGG
TCGATGCGCGCGTCGAGGACGAGTGGGACAACATCTACGTAGAATGCCAG
GACTGCTTCGACGGTGGCCGTGGCGGTACCAACAACAACCTGCAGCAGCA
GGAGCAGCAGGAGCAGCAGCAGAAGCAGCAGCAACCACCAAGATCAAAAG
AGAACGCGGCAAGGGAAGGGGCCGGCGCCGCATTACCAGCGTACATGTCT
TCTTCCACTGGCGCAGCAATGTCGAGTGCACGAGATCGAGACTCCACCTT
GAGATTTTCCTCTACGCTAGACTTGGGCTTCGAAGCTATCTTTGCCGGTG
AAGACGAAGAAGAGGAAGAGGGGACATTGGGGGAAGGGGACGATGCCGAT
AGCGACGGACAAGGCGAGGAGCGAGACGACGGCGACGAGGAGATTATCGA
CTGCGCGATTCGGGGAAAATGGTACTTCAAGGATAACGACGATCAGGTGA
GACGGGGTCGCATTGGTGGGTAGGGTTGTGGGTGTCGGGTGGCAGGGTGG
GTAGGTGGTGATTAGGTTAGACATCAAGGGAACGATCTGATCGCATAACC
AAGCTTTCCTGCTTTTGTTCCAAGTTTCTTGGAGAATTGGAATGGACTAG
GCGTTTGTTTGCTCATTTGTCTCTCATGACGCTGAAGCTGTTGTAGACGA
TCCTTATAAGAAATATGTGCTGATCTTTTTCTTTTCTATAGTAGAAAGGA
TAGCGTTTAGCCTGTGAGAGTAGTAAGCGACGCCGATATCTATTTTGAAT
ATGTGACTCGCGCGTCGGCCCCGGCGCAGATCTGGTTGTTGCCGCACAGT
ACGAAGTATTCTGTCTCGTACAAAGAGACATTCAGCGAACACGAAGAGCA
TGTCTAAGCATTCCCTTGACTTTTGTGAAATCATTATCAACACCTTGGAC
CTCCGTACTTCTCCCGTATGCTGCTCTCTCCTATTTGTTCGTTCAGCCTC
ACTTCTCTCCCCAATAGCCGTGGTTGGCCGACCAGTGCCGCAGAAACTTG
TCGTATGAATGGTGGACTGACGAGCGTAACGGCCAAAATTCCGCACTGTT
GTGCGGTATTTCGTCATACGGAATTGCGCGGACCCTCTGGACCACAGACC
CCGCAGCCACCTGATGAAAGTCTTGAATGGCGTACTTTAATGGAGCATTA
GAAAAGGGAGGGGGG back to topCoding sequence (CDS) from alignment at H-paniculata_contig4267:5888..11752- >mRNA_H-paniculata_contig4267.10910.1 ID=mRNA_H-paniculata_contig4267.10910.1|Name=mRNA_H-paniculata_contig4267.10910.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2190bp|location=Sequence derived from alignment at H-paniculata_contig4267:5888..11752- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAACGCACTTGCTTGTTCTGCACGTACTGCTACGTCCTTCTGGGACG
ACACACGCACGGCTTCTTCACACCGCTGGGCGGTGTGCGACAAGTACGTG
CGCGAGCACGCACGCGGGTATCCCTCACCGTTGCCGCGCCGCGATGTTCA
GTGAGGAAATGCAGCAGGAGGAATCTTCTTAGGCTTGCGGGAACGCCGGC
AGGCAACGGAGGTAACGGGGGCGCAGCGGCGGCAGAAGATGGATCACTTG
GAGCCAATATTGGCTTGGAGGATGCTGGGATAAGGCGTGCCCCGCTACGG
ATAACACCTAATATCCAGCCCCACGACAAACGGCGACCTAAGACCGATGT
AATTCGGGACCTCGCAACCAACCCGGCGTTTCTAACGGACGAGAGCTTTG
ATATGTTTGATGCAACGCACTTGCTTGTTCTGCACGTACTGCTACGTCCT
TCTGGGACGACACACGCACGGCTTCTTCACACCGCTGGGCGGTGTGCGAC
AAGTACGTGCGCGAGCACGCACGCGGGTATCCCTCACCGTTGCCGCGCCG
CGATGTTCAGTGAGGAAATGCAGCAGGAGGAATCTTCTTAGGCTTGCGGG
AACGCCGGCAGGCAACGGAGGTAACGGGGGCGCAGCGGCGGCAGAAGATG
GATCACTTGGAGCCAATATTGGCTTGGAGGATGCTGGGATAAGGCGTGCC
CCGCTACGGATAACACCTAATATCCAGCCCCACGACAAACGGCGACCTAA
GACCGATGTAATTCGGGACCTCGCAACCAACCCGGCGTTTCTAACGGACG
AGAGCTTTGATATGTTTGCCCTGGCCTGGGCAGAGTTCACGGATTGGTCG
AGGCGCACAGTAAACCGGAATGTAGCAGGCGTCCCTTTCGAGTTTGACAT
CCGCCAATGGTGCAGCAGCGCGCGCAAGTGGTGGCTTCGTATGGTGGAGA
TGGACGTTCAGGCGAAGGCGCCCTGGCCTGGGCAGAGTTCACGGATTGGT
CGAGGCGCACAGTAAACCGGAATGTAGCAGGCGTCCCTTTCGAGTTTGAC
ATCCGCCAATGGTGCAGCAGCGCGCGCAAGTGGTGGCTTCGTATGGTGGA
GATGGACGTTCAGGCGAAGGCGGATTTCTTCCGATTATACGAGCAAGGCA
TGCACGACCGGGATGCGTGGGGAAACCAAGCCGTGAAGGTCGATGCGCGC
GTCGAGGACGAGTGGGACAACATCTACGTAGAATGCCAGGACTGCTTCGA
CGGTGGCCGTGGCGGTACCAACAACAACCTGCAGCAGCAGGAGCAGCAGG
AGCAGCAGCAGAAGCAGCAGCAACCACCAAGATCAAAAGAGAACGCGGCA
AGGGAAGGGGCCGGCGCCGCATTACCAGCGTACATGTCTTCTTCCACTGG
CGCAGCAATGTCGAGTGCACGAGATCGAGACTCCACCTTGAGATTTTCCT
CTACGCTAGACTTGGGCTTCGAAGCTATCTTTGCCGGTGAAGACGAAGAA
GAGGAAGAGGGGACATTGGGGGAAGGGGACGATGCCGATAGCGACGGACA
AGGCGAGGAGCGAGACGACGGCGACGAGGAGATTATCGACTGCGCGATTC
GGGGAAAATGGTACTTCAAGGATAACGACGATCAGGATTTCTTCCGATTA
TACGAGCAAGGCATGCACGACCGGGATGCGTGGGGAAACCAAGCCGTGAA
GGTCGATGCGCGCGTCGAGGACGAGTGGGACAACATCTACGTAGAATGCC
AGGACTGCTTCGACGGTGGCCGTGGCGGTACCAACAACAACCTGCAGCAG
CAGGAGCAGCAGGAGCAGCAGCAGAAGCAGCAGCAACCACCAAGATCAAA
AGAGAACGCGGCAAGGGAAGGGGCCGGCGCCGCATTACCAGCGTACATGT
CTTCTTCCACTGGCGCAGCAATGTCGAGTGCACGAGATCGAGACTCCACC
TTGAGATTTTCCTCTACGCTAGACTTGGGCTTCGAAGCTATCTTTGCCGG
TGAAGACGAAGAAGAGGAAGAGGGGACATTGGGGGAAGGGGACGATGCCG
ATAGCGACGGACAAGGCGAGGAGCGAGACGACGGCGACGAGGAGATTATC
GACTGCGCGATTCGGGGAAAATGGTACTTCAAGGATAACGACGATCAGCC
TCACTTCTCTCCCCAATAGCCTCACTTCTCTCCCCAATAG back to top
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