mRNA_H-paniculata_contig42667.10909.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig42667.10909.1
Unique NamemRNA_H-paniculata_contig42667.10909.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig42667.10909.1 vs. uniprot
Match: D7G4S8_ECTSI (DEAD box helicase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4S8_ECTSI)

HSP 1 Score: 155 bits (393), Expect = 2.360e-42
Identity = 75/80 (93.75%), Postives = 79/80 (98.75%), Query Frame = 1
Query:    1 LQVNWLTERLETVGVIAAPLSGESSKDDRAEIMRRLQDKRIAMVVTTEMAARGLDVSHLTHVVNYDLPTDGEHYVHRAGR 240
            +QVNWLTERLETVG+IAAPLSGESSKDDRAEIMRRLQDKRIAMVVTTEMAARGLDV+HLTHVVNYDLPTD +HYVHRAGR
Sbjct: 1099 IQVNWLTERLETVGIIAAPLSGESSKDDRAEIMRRLQDKRIAMVVTTEMAARGLDVAHLTHVVNYDLPTDADHYVHRAGR 1178          
BLAST of mRNA_H-paniculata_contig42667.10909.1 vs. uniprot
Match: A0A835Z5P1_9STRA (Phosphodiesterase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5P1_9STRA)

HSP 1 Score: 132 bits (332), Expect = 4.020e-34
Identity = 63/78 (80.77%), Postives = 70/78 (89.74%), Query Frame = 1
Query:    4 QVNWLTERLETVGVIAAPLSGESSKDDRAEIMRRLQDKRIAMVVTTEMAARGLDVSHLTHVVNYDLPTDGEHYVHRAG 237
            QV WLTE+LETVG+IAAPLSGES K++R EIM+RL D R+AMVVTTEMAARG+DV  LTHVVNYDLPTD EHYVHRAG
Sbjct:  800 QVRWLTEKLETVGIIAAPLSGESVKEERTEIMKRLTDGRLAMVVTTEMAARGIDVPQLTHVVNYDLPTDAEHYVHRAG 877          
BLAST of mRNA_H-paniculata_contig42667.10909.1 vs. uniprot
Match: A0A7S2XV29_9STRA (Hypothetical protein n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XV29_9STRA)

HSP 1 Score: 114 bits (284), Expect = 8.290e-28
Identity = 55/79 (69.62%), Postives = 67/79 (84.81%), Query Frame = 1
Query:    4 QVNWLTERLETVGVIAAPLSGESSKDDRAEIMRRLQDKRIAMVVTTEMAARGLDVSHLTHVVNYDLPTDGEHYVHRAGR 240
            +V  L E+L  +G++AAPLSGESSKDDR E +RRLQ  +I+++V+TE+AARGLDV  LTHVVNYDLPTD EHYVHRAGR
Sbjct:  409 KVQILLEKLLDLGIVAAPLSGESSKDDRKEAVRRLQKGQISVLVSTELAARGLDVPQLTHVVNYDLPTDAEHYVHRAGR 487          
BLAST of mRNA_H-paniculata_contig42667.10909.1 vs. uniprot
Match: A0A0G4F225_VITBC (Uncharacterized protein n=3 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4F225_VITBC)

HSP 1 Score: 105 bits (261), Expect = 1.530e-24
Identity = 49/79 (62.03%), Postives = 62/79 (78.48%), Query Frame = 1
Query:    4 QVNWLTERLETVGVIAAPLSGESSKDDRAEIMRRLQDKRIAMVVTTEMAARGLDVSHLTHVVNYDLPTDGEHYVHRAGR 240
            +V WL + L    +IAAPLSG +SKDDRAE+ +R+Q+ +I M V+TE+ ARGLDV  L+HVVN DLPTD EHY+HRAGR
Sbjct:  653 RVKWLVDHLLQKQIIAAPLSGFTSKDDRAEVFKRMQNGQIGMAVSTELGARGLDVPWLSHVVNLDLPTDAEHYIHRAGR 731          
BLAST of mRNA_H-paniculata_contig42667.10909.1 vs. uniprot
Match: A0A482S7T5_9ARCH (DEAD/DEAH box helicase n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S7T5_9ARCH)

HSP 1 Score: 98.2 bits (243), Expect = 4.830e-23
Identity = 47/76 (61.84%), Postives = 60/76 (78.95%), Query Frame = 1
Query:    4 QVNWLTERLETVGVIAAPLSGESSKDDRAEIMRRLQDKRIAMVVTTEMAARGLDVSHLTHVVNYDLPTDGEHYVHR 231
            +V  L   L   G+IAAPLSGESSKDDR E+MRRL++  + +VVTTE+AARGLD+  L+HV+N++LPTD  HYVHR
Sbjct:  219 RVKALVSDLLQRGIIAAPLSGESSKDDRKEVMRRLREGGLQLVVTTELAARGLDIPDLSHVINFELPTDSVHYVHR 294          
BLAST of mRNA_H-paniculata_contig42667.10909.1 vs. uniprot
Match: A0A7S2RGS7_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RGS7_9STRA)

HSP 1 Score: 100 bits (249), Expect = 6.420e-23
Identity = 50/79 (63.29%), Postives = 59/79 (74.68%), Query Frame = 1
Query:    4 QVNWLTERLETVGVIAAPLSGESSKDDRAEIMRRLQDKRIAMVVTTEMAARGLDVSHLTHVVNYDLPTDGEHYVHRAGR 240
            +V  L ++L  VG+IAAPL GESSK+DR EIMRRL   R+ +VVTTE+AARG+D   LTHVVN DLP D   Y HRAGR
Sbjct:  733 RVKVLCDKLLDVGIIAAPLHGESSKEDRTEIMRRLASGRLGLVVTTELAARGIDAPILTHVVNLDLPPDATRYAHRAGR 811          
BLAST of mRNA_H-paniculata_contig42667.10909.1 vs. uniprot
Match: A0A7S2S9L8_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2S9L8_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 2.920e-22
Identity = 41/79 (51.90%), Postives = 57/79 (72.15%), Query Frame = 1
Query:    4 QVNWLTERLETVGVIAAPLSGESSKDDRAEIMRRLQDKRIAMVVTTEMAARGLDVSHLTHVVNYDLPTDGEHYVHRAGR 240
            +V    ++L  +G+IAAP +GE  K DR ++ + L++  + +VV TEMAARG+D  +LTHV+NYDLPTD  HY HRAGR
Sbjct:   65 RVKITVKKLAEMGIIAAPFTGEEQKQDRTDVNKALREGYVGIVVATEMAARGIDAPYLTHVINYDLPTDASHYAHRAGR 143          
BLAST of mRNA_H-paniculata_contig42667.10909.1 vs. uniprot
Match: L1JBQ8_GUITC (Uncharacterized protein (Fragment) n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JBQ8_GUITC)

HSP 1 Score: 90.9 bits (224), Expect = 8.330e-20
Identity = 44/82 (53.66%), Postives = 62/82 (75.61%), Query Frame = 1
Query:    4 QVNWLTERLETVGVIAAPLSGESSKDDRAEIMRRLQDK---RIAMVVTTEMAARGLDVSHLTHVVNYDLPTDGEHYVHRAGR 240
            +V+ + ++L   G+IAAPL G+ SK+DR E+MRRL++     + +VV TE+AARG+D+  L+HVV+ DLPTD  HYVHRAGR
Sbjct:  260 RVDIICDKLFENGLIAAPLKGDESKEDRKEVMRRLREGTLGEVPLVVATEIAARGIDIPGLSHVVSLDLPTDANHYVHRAGR 341          
BLAST of mRNA_H-paniculata_contig42667.10909.1 vs. uniprot
Match: A0A7S4R6D9_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4R6D9_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 1.480e-19
Identity = 43/81 (53.09%), Postives = 60/81 (74.07%), Query Frame = 1
Query:    4 QVNWLTERLETVGVIAAPLSG--ESSKDDRAEIMRRLQDKRIAMVVTTEMAARGLDVSHLTHVVNYDLPTDGEHYVHRAGR 240
            +V  + ++L  +G++AAPL G  +S K+DRAE+ R L+D  + +VV+TEMAARG+D   LTHV+N DLPTD  HY HR+GR
Sbjct:  436 KVGIVVDKLADMGIVAAPLFGGTKSDKNDRAEVARALRDGYVGIVVSTEMAARGIDAPLLTHVINLDLPTDASHYAHRSGR 516          
BLAST of mRNA_H-paniculata_contig42667.10909.1 vs. uniprot
Match: A0A7S2EH88_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2EH88_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 1.540e-19
Identity = 43/81 (53.09%), Postives = 60/81 (74.07%), Query Frame = 1
Query:    4 QVNWLTERLETVGVIAAPLSG--ESSKDDRAEIMRRLQDKRIAMVVTTEMAARGLDVSHLTHVVNYDLPTDGEHYVHRAGR 240
            +V  + ++L  +G++AAPL G  +S K+DRAE+ R L+D  + +VV+TEMAARG+D   LTHV+N DLPTD  HY HR+GR
Sbjct:  715 KVGIVVDKLADMGIVAAPLFGGTKSDKNDRAEVARALRDGYVGIVVSTEMAARGIDAPLLTHVINLDLPTDASHYAHRSGR 795          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig42667.10909.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G4S8_ECTSI2.360e-4293.75DEAD box helicase n=2 Tax=Ectocarpus TaxID=2879 Re... [more]
A0A835Z5P1_9STRA4.020e-3480.77Phosphodiesterase n=1 Tax=Tribonema minus TaxID=30... [more]
A0A7S2XV29_9STRA8.290e-2869.62Hypothetical protein n=2 Tax=Fibrocapsa japonica T... [more]
A0A0G4F225_VITBC1.530e-2462.03Uncharacterized protein n=3 Tax=Vitrella brassicaf... [more]
A0A482S7T5_9ARCH4.830e-2361.84DEAD/DEAH box helicase n=1 Tax=archaeon TaxID=1906... [more]
A0A7S2RGS7_9STRA6.420e-2363.29Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2S9L8_9STRA2.920e-2251.90Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
L1JBQ8_GUITC8.330e-2053.66Uncharacterized protein (Fragment) n=1 Tax=Guillar... [more]
A0A7S4R6D9_9STRA1.480e-1953.09Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S2EH88_9STRA1.540e-1953.09Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig42667contigH-paniculata_contig42667:473..1060 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score156.0
Seed ortholog evalue7.4e-36
Seed eggNOG ortholog2880.D7G4S8
Hectar predicted targeting categoryother localisation
EggNOG free text desc.helicase activity
EggNOG OGsCOG0513@1,KOG0327@2759
COG Functional cat.JKL
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size240
Cds size240
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930297.1888735-CDS-H-paniculata_contig42667:472..5831622930297.1888735-CDS-H-paniculata_contig42667:472..583Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig42667 473..583 +
1691481230.4266632-CDS-H-paniculata_contig42667:472..5831691481230.4266632-CDS-H-paniculata_contig42667:472..583Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig42667 473..583 +
1622930297.2040462-CDS-H-paniculata_contig42667:931..10601622930297.2040462-CDS-H-paniculata_contig42667:931..1060Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig42667 932..1060 +
1691481230.4365048-CDS-H-paniculata_contig42667:931..10601691481230.4365048-CDS-H-paniculata_contig42667:931..1060Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig42667 932..1060 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig42667.10909.1prot_H-paniculata_contig42667.10909.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig42667 473..1060 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig42667.10909.1

>prot_H-paniculata_contig42667.10909.1 ID=prot_H-paniculata_contig42667.10909.1|Name=mRNA_H-paniculata_contig42667.10909.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=80bp
LQVNWLTERLETVGVIAAPLSGESSKDDRAEIMRRLQDKRIAMVVTTEMA
ARGLDVSHLTHVVNYDLPTDGEHYVHRAGR
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mRNA from alignment at H-paniculata_contig42667:473..1060+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig42667.10909.1 ID=mRNA_H-paniculata_contig42667.10909.1|Name=mRNA_H-paniculata_contig42667.10909.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=588bp|location=Sequence derived from alignment at H-paniculata_contig42667:473..1060+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTGCAGGTGAACTGGCTGACGGAGCGCTTGGAAACGGTCGGAGTTATTGC AGCTCCATTGTCTGGAGAGAGTTCCAAGGACGATCGCGCCGAGATTATGA GGCGGCTGCAGGTGGGGAACAACGAGAAATAAAGAAAGTGCTTGGCATGG GACCATTTTCCCGTCACCATTCGTGAAACCAATTTCAGATATTTTTCGTA ACCTCCACCAAACGATTACAAAAACACTACTGATTGATTATTCACAAGCA TATACTTGTAAAAGCATATCGTTCCCATAAAAGAAACATTACATGAAAAC ATTCGATAAATTTGACTAATAACCTTAACCCCCCCCCCGTCCATGAGCCC CCTTCCCCGGTGAACTTACTTCCCCCCCCACCCTTCTTTCTTGTCGTATT GTTGTTTCTTCCGCCTCTCCTTTGTATTTGACTATTGTTTTTGCTTTGTC ATGATCCAGGATAAGCGCATCGCCATGGTGGTCACAACTGAGATGGCAGC GCGAGGCCTGGATGTCTCCCACTTGACCCATGTCGTCAATTACGACCTGC CCACCGATGGGGAGCACTACGTGCACCGAGCCGGCAGG
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Coding sequence (CDS) from alignment at H-paniculata_contig42667:473..1060+

>mRNA_H-paniculata_contig42667.10909.1 ID=mRNA_H-paniculata_contig42667.10909.1|Name=mRNA_H-paniculata_contig42667.10909.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=480bp|location=Sequence derived from alignment at H-paniculata_contig42667:473..1060+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTGCAGGTGAACTGGCTGACGGAGCGCTTGGAAACGGTCGGAGTTATTGC
AGCTCCATTGTCTGGAGAGAGTTCCAAGGACGATCGCGCCGAGATTATGA
GGCGGCTGCAGTTGCAGGTGAACTGGCTGACGGAGCGCTTGGAAACGGTC
GGAGTTATTGCAGCTCCATTGTCTGGAGAGAGTTCCAAGGACGATCGCGC
CGAGATTATGAGGCGGCTGCAGGATAAGCGCATCGCCATGGTGGTCACAA
CTGAGATGGCAGCGCGAGGCCTGGATGTCTCCCACTTGACCCATGTCGTC
AATTACGACCTGCCCACCGATGGGGAGCACTACGTGCACCGAGCCGGCAG
GGATAAGCGCATCGCCATGGTGGTCACAACTGAGATGGCAGCGCGAGGCC
TGGATGTCTCCCACTTGACCCATGTCGTCAATTACGACCTGCCCACCGAT
GGGGAGCACTACGTGCACCGAGCCGGCAGG
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