mRNA_H-paniculata_contig4259.10882.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4259.10882.1
Unique NamemRNA_H-paniculata_contig4259.10882.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig4259.10882.1 vs. uniprot
Match: A0A6H5K9B1_9PHAE (Peptidase S59 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K9B1_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 1.770e-18
Identity = 42/64 (65.62%), Postives = 48/64 (75.00%), Query Frame = 1
Query:   19 GGTSFPPTLDMEGYETTPPMSELVAMDKNSLRSVTGFKVSRPGYGSIEWKEPVDLRRVDIGLVV 210
            GG  F PTLD+E Y+T P M+EL  M K+ L +V+GF VSR GYGSI WKEPVDLR VDIG VV
Sbjct: 1017 GGNDFAPTLDLEEYKTEPSMAELAKMTKDELAAVSGFVVSRQGYGSIAWKEPVDLRGVDIGSVV 1080          
BLAST of mRNA_H-paniculata_contig4259.10882.1 vs. uniprot
Match: R7QFR8_CHOCR (Peptidase S59 domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QFR8_CHOCR)

HSP 1 Score: 61.6 bits (148), Expect = 2.090e-9
Identity = 30/71 (42.25%), Postives = 42/71 (59.15%), Query Frame = 1
Query:    1 DTDVGVGGTSFPPTLDMEGYETTPPMSELVAMDKNSLRSVTGFKVSRPGYGSIEWKEPVDLRRVDIGLVVN 213
            D+D       + P L  EG+ T P M+EL +     L+SV  F V R G+G I+W EPVD+R +D+ LVV+
Sbjct:  638 DSDDQYNPDKYLPYLTKEGFYTVPSMAELASRTMKELQSVENFTVGRKGFGEIQWIEPVDVRGLDLDLVVD 708          
BLAST of mRNA_H-paniculata_contig4259.10882.1 vs. uniprot
Match: A0A7S2PE42_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PE42_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 2.870e-9
Identity = 29/58 (50.00%), Postives = 36/58 (62.07%), Query Frame = 1
Query:   37 PTLDMEGYETTPPMSELVAMDKNSLRSVTGFKVSRPGYGSIEWKEPVDLRRVDIGLVV 210
            P L   GY+  P M+EL AM +  L +V GFKV RPG+GS+ W   VD+R VDI   V
Sbjct:  349 PKLTKRGYDVYPSMAELEAMSEAELATVIGFKVERPGFGSVAWDGAVDVREVDIDAEV 406          
BLAST of mRNA_H-paniculata_contig4259.10882.1 vs. uniprot
Match: K0S9G7_THAOC (Peptidase S59 domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0S9G7_THAOC)

HSP 1 Score: 61.2 bits (147), Expect = 2.900e-9
Identity = 28/58 (48.28%), Postives = 37/58 (63.79%), Query Frame = 1
Query:   37 PTLDMEGYETTPPMSELVAMDKNSLRSVTGFKVSRPGYGSIEWKEPVDLRRVDIGLVV 210
            P L   GY   PPM+EL +M +  L +V+GFKV RPG+GS+ W   VD+R VD+   V
Sbjct:  652 PKLTKAGYTIHPPMNELESMSEADLTAVSGFKVERPGFGSVSWDGAVDVRGVDVDTSV 709          
BLAST of mRNA_H-paniculata_contig4259.10882.1 vs. uniprot
Match: A0A196S889_BLAHN (Nucleoporin n=1 Tax=Blastocystis sp. subtype 1 (strain ATCC 50177 / NandII) TaxID=478820 RepID=A0A196S889_BLAHN)

HSP 1 Score: 56.6 bits (135), Expect = 1.210e-7
Identity = 26/59 (44.07%), Postives = 37/59 (62.71%), Query Frame = 1
Query:   37 PTLDMEGYETTPPMSELVAMDKNSLRSVTGFKVSRPGYGSIEWKEPVDLRRVDIGLVVN 213
            PTL   GYE TP ++ L AMD+ +L  V    +   G G +EW+EPVDLR +D+  +V+
Sbjct:  529 PTLTKPGYEITPSLATLNAMDEEALSHVDKVSICVEGVGKVEWEEPVDLRGLDLDALVS 587          
BLAST of mRNA_H-paniculata_contig4259.10882.1 vs. uniprot
Match: A0A196SIN3_BLAHN (Nucleoporin n=1 Tax=Blastocystis sp. subtype 1 (strain ATCC 50177 / NandII) TaxID=478820 RepID=A0A196SIN3_BLAHN)

HSP 1 Score: 56.6 bits (135), Expect = 1.220e-7
Identity = 26/59 (44.07%), Postives = 37/59 (62.71%), Query Frame = 1
Query:   37 PTLDMEGYETTPPMSELVAMDKNSLRSVTGFKVSRPGYGSIEWKEPVDLRRVDIGLVVN 213
            PTL   GYE TP ++ L AMD+ +L  V    +   G G +EW+EPVDLR +D+  +V+
Sbjct:  828 PTLTKPGYEITPSLATLNAMDEEALSHVDKVSICVEGVGKVEWEEPVDLRGLDLDALVS 886          
BLAST of mRNA_H-paniculata_contig4259.10882.1 vs. uniprot
Match: A0A7S1YNB7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1YNB7_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 2.250e-7
Identity = 27/58 (46.55%), Postives = 35/58 (60.34%), Query Frame = 1
Query:   37 PTLDMEGYETTPPMSELVAMDKNSLRSVTGFKVSRPGYGSIEWKEPVDLRRVDIGLVV 210
            P L  EGY+ TP +  +  M +  L  V+GF VSRPG G I+W   VD+R VD+  VV
Sbjct:   71 PKLTREGYKVTPSIDAMSNMTEAELACVSGFSVSRPGLGRIDWDGAVDVRGVDLDSVV 128          
BLAST of mRNA_H-paniculata_contig4259.10882.1 vs. uniprot
Match: A0A383VN41_TETOB (Peptidase S59 domain-containing protein n=2 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383VN41_TETOB)

HSP 1 Score: 55.1 bits (131), Expect = 4.340e-7
Identity = 25/56 (44.64%), Postives = 38/56 (67.86%), Query Frame = 1
Query:   55 GYETTPPMSELVAM---DKNSLRSVTGFKVSRPGYGSIEWKEPVDLRRVDIGLVVN 213
            GY T P   EL A+   +  +L  ++GF+V RPGYG++EW  PVD+R VD+G +++
Sbjct:  822 GYSTEPGGKELQALAAQNPAALSRLSGFRVERPGYGTLEWLAPVDVRGVDLGEIIS 877          
BLAST of mRNA_H-paniculata_contig4259.10882.1 vs. uniprot
Match: A0A7S0BWX7_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0BWX7_9STRA)

HSP 1 Score: 50.8 bits (120), Expect = 1.320e-5
Identity = 22/58 (37.93%), Postives = 37/58 (63.79%), Query Frame = 1
Query:   37 PTLDMEGYETTPPMSELVAMDKNSLRSVTGFKVSRPGYGSIEWKEPVDLRRVDIGLVV 210
            PTL    Y  +P +++L  M + SL +V  F +SRP  GS+EW+  VD+R +++ L++
Sbjct:  257 PTLTKTDYIISPTLTQLSTMSEASLATVPNFTISRPQIGSVEWEGAVDIRSLNLDLLI 314          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4259.10882.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A6H5K9B1_9PHAE1.770e-1865.63Peptidase S59 domain-containing protein n=2 Tax=Ec... [more]
R7QFR8_CHOCR2.090e-942.25Peptidase S59 domain-containing protein n=1 Tax=Ch... [more]
A0A7S2PE42_9STRA2.870e-950.00Hypothetical protein (Fragment) n=1 Tax=Skeletonem... [more]
K0S9G7_THAOC2.900e-948.28Peptidase S59 domain-containing protein n=1 Tax=Th... [more]
A0A196S889_BLAHN1.210e-744.07Nucleoporin n=1 Tax=Blastocystis sp. subtype 1 (st... [more]
A0A196SIN3_BLAHN1.220e-744.07Nucleoporin n=1 Tax=Blastocystis sp. subtype 1 (st... [more]
A0A7S1YNB7_9STRA2.250e-746.55Hypothetical protein (Fragment) n=1 Tax=Grammatoph... [more]
A0A383VN41_TETOB4.340e-744.64Peptidase S59 domain-containing protein n=2 Tax=Te... [more]
A0A7S0BWX7_9STRA1.320e-537.93Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4259contigH-paniculata_contig4259:364..576 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score82.4
Seed ortholog evalue9.2e-14
Seed eggNOG ortholog2880.D7FX93
Preferred nameNUP145
KEGG koko:K14297,ko:K18716,ko:K18720
KEGG TC1.I.1
KEGG Pathwayko03013,ko05164,map03013,map05164
KEGG ModuleM00427
Hectar predicted targeting categoryother localisation
GOsGO:0000972,GO:0000973,GO:0003674,GO:0003676,GO:0003723,GO:0005048,GO:0005198,GO:0005488,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005643,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006325,GO:0006342,GO:0006344,GO:0006348,GO:0006355,GO:0006403,GO:0006405,GO:0006406,GO:0006409,GO:0006606,GO:0006607,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006950,GO:0006974,GO:0006996,GO:0006997,GO:0008104,GO:0008139,GO:0008150,GO:0008152,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0012505,GO:0015031,GO:0015833,GO:0015931,GO:0016020,GO:0016021,GO:0016043,GO:0016458,GO:0016973,GO:0017038,GO:0017056,GO:0019219,GO:0019222,GO:0031080,GO:0031081,GO:0031224,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031503,GO:0031967,GO:0031975,GO:0032386,GO:0032879,GO:0032991,GO:0033036,GO:0033218,GO:0033365,GO:0033554,GO:0034397,GO:0034398,GO:0034504,GO:0034613,GO:0034629,GO:0034641,GO:0035392,GO:0036228,GO:0040029,GO:0042277,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044446,GO:0044464,GO:0044613,GO:0044614,GO:0045184,GO:0045814,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0046483,GO:0046822,GO:0046907,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050000,GO:0050657,GO:0050658,GO:0050789,GO:0050794,GO:0050896,GO:0051028,GO:0051031,GO:0051049,GO:0051168,GO:0051169,GO:0051170,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051234,GO:0051236,GO:0051252,GO:0051253,GO:0051254,GO:0051276,GO:0051640,GO:0051641,GO:0051649,GO:0051664,GO:0051668,GO:0051716,GO:0060255,GO:0060341,GO:0065007,GO:0070727,GO:0071166,GO:0071426,GO:0071427,GO:0071431,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072594,GO:0072657,GO:0080090,GO:0090304,GO:0090435,GO:0097064,GO:0097159,GO:1901360,GO:1901363,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.structural constituent of nuclear pore
EggNOG OGsKOG0845@1,KOG0845@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03019,ko03036
Exons1
Model size213
Cds size213
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930293.899669-CDS-H-paniculata_contig4259:363..5761622930293.899669-CDS-H-paniculata_contig4259:363..576Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4259 364..576 +
1691481228.8906393-CDS-H-paniculata_contig4259:363..5761691481228.8906393-CDS-H-paniculata_contig4259:363..576Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4259 364..576 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4259.10882.1prot_H-paniculata_contig4259.10882.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4259 364..576 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4259.10882.1

>prot_H-paniculata_contig4259.10882.1 ID=prot_H-paniculata_contig4259.10882.1|Name=mRNA_H-paniculata_contig4259.10882.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=71bp
DTDVGVGGTSFPPTLDMEGYETTPPMSELVAMDKNSLRSVTGFKVSRPGY
GSIEWKEPVDLRRVDIGLVVN
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mRNA from alignment at H-paniculata_contig4259:364..576+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4259.10882.1 ID=mRNA_H-paniculata_contig4259.10882.1|Name=mRNA_H-paniculata_contig4259.10882.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=213bp|location=Sequence derived from alignment at H-paniculata_contig4259:364..576+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GATACGGATGTAGGTGTTGGTGGCACTTCTTTTCCCCCCACGTTGGACAT GGAAGGTTACGAGACGACACCGCCCATGTCGGAGCTTGTTGCCATGGACA AGAATTCGCTGAGATCGGTGACGGGGTTCAAAGTGAGCCGACCGGGCTAC GGCAGCATCGAGTGGAAGGAGCCCGTGGATCTCCGCCGAGTAGATATTGG CTTGGTGGTGAAT
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Coding sequence (CDS) from alignment at H-paniculata_contig4259:364..576+

>mRNA_H-paniculata_contig4259.10882.1 ID=mRNA_H-paniculata_contig4259.10882.1|Name=mRNA_H-paniculata_contig4259.10882.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=426bp|location=Sequence derived from alignment at H-paniculata_contig4259:364..576+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GATACGGATGTAGGTGTTGGTGGCACTTCTTTTCCCCCCACGTTGGACAT
GGAAGGTTACGAGACGACACCGCCCATGTCGGAGCTTGTTGCCATGGACA
AGAATTCGCTGAGATCGGTGACGGGGTTCAAAGTGAGCCGACCGGGCTAC
GGCAGCATCGAGTGGAAGGAGCCCGTGGATCTCCGCCGAGTAGATATTGG
CTTGGTGGTGAATGATACGGATGTAGGTGTTGGTGGCACTTCTTTTCCCC
CCACGTTGGACATGGAAGGTTACGAGACGACACCGCCCATGTCGGAGCTT
GTTGCCATGGACAAGAATTCGCTGAGATCGGTGACGGGGTTCAAAGTGAG
CCGACCGGGCTACGGCAGCATCGAGTGGAAGGAGCCCGTGGATCTCCGCC
GAGTAGATATTGGCTTGGTGGTGAAT
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