mRNA_H-paniculata_contig42581.10881.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig42581.10881.1
Unique NamemRNA_H-paniculata_contig42581.10881.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig42581.10881.1 vs. uniprot
Match: A0A6H5KG08_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG08_9PHAE)

HSP 1 Score: 107 bits (268), Expect = 2.500e-24
Identity = 71/152 (46.71%), Postives = 93/152 (61.18%), Query Frame = -2 
Query:   12 LESFGLSTLCLAVLQLVTDHADDILPEELLSGLVTAEKVRAQHSKSGP--PGRVQLFDAMFTHIRRLAA---TGEID--PTAVASVFAPCF-----GSVATGLTLTS---ADHRLRRKILALLGAAADPDGPAPMKALQTTHKCIWATAPTP 422
            L +FG++ LC AVL L+T H+ +ILP E LSG+VTA KVRA+H + G   PGR+QLFDA+ +H RRLA+    G +D   TA+A VFAPCF      S A G  +     A  RLRRK+ A L +AA  +G A  +      K I ++ PTP
Sbjct:  697 LAAFGMADLCAAVLDLITAHSAEILPAEALSGIVTAAKVRAEHRRGGKAHPGRLQLFDAVTSHARRLASGKDLGGVDHSTTAIAGVFAPCFEAAFSSSTARGNRVAGSGGASERLRRKVFAFLESAAGSNG-AVDRGATAARKDISSSKPTP 847
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BLAST of mRNA_H-paniculata_contig42581.10881.1 vs. uniprot
Match: D7FGZ3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGZ3_ECTSI)

HSP 1 Score: 103 bits (257), Expect = 7.540e-23
Identity = 63/131 (48.09%), Postives = 83/131 (63.36%), Query Frame = -2 
Query:   75 LESFGLSTLCLAVLQLVTDHADDILPEELLSGLVTAEKVRAQHSKSGP--PGRVQLFDAMFTHIRRLAA---TGEID--PTAVASVFAPCFGSVATGLTLTS--------ADHRLRRKILALLGAAADPDG 422
            L +F ++ LC AVL L+T H+ +ILP E LSG+VTA KVRA+H + G   PGR+QLFDA+ +H RRLA+    G +D   TA+A VFAPCF +  +  T           A  RLRRK+LA L +AA  +G
Sbjct:  787 LAAFEMADLCAAVLDLITVHSAEILPAEALSGIVTAAKVRAEHRRGGKAHPGRLQLFDAVTSHARRLASGKDLGGVDHSTTAIAGVFAPCFEAAFSSSTARGNRAAXXXXASERLRRKVLAFLESAAGSNG 917
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig42581.10881.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KG08_9PHAE2.500e-2446.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FGZ3_ECTSI7.540e-2348.09Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig42581contigH-paniculata_contig42581:514..963 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size451
Cds size450
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930293.8600607-CDS-H-paniculata_contig42581:513..9631622930293.8600607-CDS-H-paniculata_contig42581:513..963Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig42581 514..963 +
1691481228.8774993-CDS-H-paniculata_contig42581:513..9631691481228.8774993-CDS-H-paniculata_contig42581:513..963Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig42581 514..963 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig42581.10881.1prot_H-paniculata_contig42581.10881.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig42581 514..963 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig42581.10881.1

>prot_H-paniculata_contig42581.10881.1 ID=prot_H-paniculata_contig42581.10881.1|Name=mRNA_H-paniculata_contig42581.10881.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=150bp
EVAPGVGAVAQIHLCVVCSAFIGAGPSGSAAAPKRARILRRRRWSALVSV
SPVATDPKHGAKTEATAVGSISPVAARRRIWVNMASKSWTLPGGPLLLCC
ARTFSAVTKPDSSSSGRISSAWSVTSCNTARQRVLSPKLSSIFLLLVTA*
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mRNA from alignment at H-paniculata_contig42581:514..963+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig42581.10881.1 ID=mRNA_H-paniculata_contig42581.10881.1|Name=mRNA_H-paniculata_contig42581.10881.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=450bp|location=Sequence derived from alignment at H-paniculata_contig42581:514..963+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGGTTGCTCCAGGGGTGGGGGCAGTAGCCCAGATACATTTATGTGTCGT
CTGCAGCGCTTTCATTGGCGCCGGCCCGTCAGGATCGGCCGCTGCTCCCA
AAAGGGCAAGAATCTTACGCCGAAGACGATGGTCGGCACTTGTGAGTGTC
AGTCCTGTTGCGACTGACCCGAAGCACGGGGCGAAGACAGAGGCTACGGC
AGTCGGGTCAATCTCTCCCGTGGCTGCCAGGCGACGGATATGGGTGAACA
TGGCGTCGAAGAGCTGGACCCTTCCGGGTGGACCGCTTTTACTGTGCTGT
GCACGCACCTTTTCTGCGGTAACCAAGCCCGACAGCAGCTCTTCGGGCAG
GATATCATCGGCATGGTCGGTTACGAGCTGCAACACGGCGAGGCAGAGAG
TACTTAGCCCGAAACTCTCGAGTATTTTCCTGTTGTTGGTGACTGCGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig42581:514..963+

>mRNA_H-paniculata_contig42581.10881.1 ID=mRNA_H-paniculata_contig42581.10881.1|Name=mRNA_H-paniculata_contig42581.10881.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=900bp|location=Sequence derived from alignment at H-paniculata_contig42581:514..963+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGGTTGCTCCAGGGGTGGGGGCAGTAGCCCAGATACATTTATGTGTCGT
CTGCAGCGCTTTCATTGGCGCCGGCCCGTCAGGATCGGCCGCTGCTCCCA
AAAGGGCAAGAATCTTACGCCGAAGACGATGGTCGGCACTTGTGAGTGTC
AGTCCTGTTGCGACTGACCCGAAGCACGGGGCGAAGACAGAGGCTACGGC
AGTCGGGTCAATCTCTCCCGTGGCTGCCAGGCGACGGATATGGGTGAACA
TGGCGTCGAAGAGCTGGACCCTTCCGGGTGGACCGCTTTTACTGTGCTGT
GCACGCACCTTTTCTGCGGTAACCAAGCCCGACAGCAGCTCTTCGGGCAG
GATATCATCGGCATGGTCGGTTACGAGCTGCAACACGGCGAGGCAGAGAG
TACTTAGCCCGAAACTCTCGAGTATTTTCCTGTTGTTGGTGACTGCGTGA
GAGGTTGCTCCAGGGGTGGGGGCAGTAGCCCAGATACATTTATGTGTCGT
CTGCAGCGCTTTCATTGGCGCCGGCCCGTCAGGATCGGCCGCTGCTCCCA
AAAGGGCAAGAATCTTACGCCGAAGACGATGGTCGGCACTTGTGAGTGTC
AGTCCTGTTGCGACTGACCCGAAGCACGGGGCGAAGACAGAGGCTACGGC
AGTCGGGTCAATCTCTCCCGTGGCTGCCAGGCGACGGATATGGGTGAACA
TGGCGTCGAAGAGCTGGACCCTTCCGGGTGGACCGCTTTTACTGTGCTGT
GCACGCACCTTTTCTGCGGTAACCAAGCCCGACAGCAGCTCTTCGGGCAG
GATATCATCGGCATGGTCGGTTACGAGCTGCAACACGGCGAGGCAGAGAG
TACTTAGCCCGAAACTCTCGAGTATTTTCCTGTTGTTGGTGACTGCGTGA
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