mRNA_H-paniculata_contig4256.10878.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4256.10878.1
Unique NamemRNA_H-paniculata_contig4256.10878.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig4256.10878.1 vs. uniprot
Match: A0A6H5KR24_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR24_9PHAE)

HSP 1 Score: 154 bits (389), Expect = 3.100e-42
Identity = 80/189 (42.33%), Postives = 120/189 (63.49%), Query Frame = 1
Query:   10 EEEEMTKFSYQEEVGALMWTATTTRPDIACAVRAVARFCERPGPAHKKAVIKIIQYLLHTMGCSITYGQG--CGLSMEAYTD*DFGACLDTRRSVSSGVMMLAKGAISWHSRMQKITASGTSEAKYIALSKSVKDVMFLMQAQEFMEPSMTIGAVNVFQDNERAIKLTNKKYASRRTKHIAIKHHMVRD 570
            ++EE+  + ++E +G+LMW AT TRPDIA AVRAVAR+C  P   H +A + I+ Y++ T    IT+ +G   GLSME + D D+ +    RRSVS G++M   G ISW SR QK     T+EA+Y++L+  +K+V+FL Q   FM P   +  + VF+DN+ AI+L     ++   KHI ++HH +R+
Sbjct:  107 QDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDSGITFRRGSIAGLSMEVFADADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNLKHIDVRHHFIRE 295          
BLAST of mRNA_H-paniculata_contig4256.10878.1 vs. uniprot
Match: A0A6H5JLN0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLN0_9PHAE)

HSP 1 Score: 156 bits (395), Expect = 4.150e-42
Identity = 85/215 (39.53%), Postives = 131/215 (60.93%), Query Frame = 1
Query:   10 EEEEMTKFSYQEEVGALMWTATTTRPDIACAVRAVARFCERPGPAHKKAVIKIIQYLLHTMGCSITYGQG--CGLSMEAYTD*DFGACLDTRRSVSSGVMMLAKGAISWHSRMQKITASGTSEAKYIALSKSVKDVMFLMQAQEFMEPSMTIGAVNVFQDNERAIKLTNKKYASRRTKHIAIKHHMVRDASDVEKVRV-------AYADLLIKPL 627
            ++EE+  + ++E +G+LMW AT TRPDIA AVRAVAR+C  P   H +A + I+ Y++ T    IT+ +G   GLSME + D D+ +    RRSVS G++M   G ISW SR QK     T+EA+Y++L+  +K+V+FL Q   FM P   +  + VF+DN+ AI+L     ++  +KHI ++HH +R+    +++ +        +AD L K L
Sbjct:  208 QDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFIRELVGRKEISIFHVESAYQHADFLTKAL 422          
BLAST of mRNA_H-paniculata_contig4256.10878.1 vs. uniprot
Match: A0A6H5KD60_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD60_9PHAE)

HSP 1 Score: 152 bits (385), Expect = 5.580e-42
Identity = 82/215 (38.14%), Postives = 129/215 (60.00%), Query Frame = 1
Query:   10 EEEEMTKFSYQEEVGALMWTATTTRPDIACAVRAVARFCERPGPAHKKAVIKIIQYLLHTMGCSITYGQG--CGLSMEAYTD*DFGACLDTRRSVSSGVMMLAKGAISWHSRMQKITASGTSEAKYIALSKSVKDVMFLMQAQEFMEPSMTIGAVNVFQDNERAIKLTNKKYASRRTKHIAIKHHMVRDASDVEKVRVAY-------ADLLIKPL 627
            ++EE+  + ++E +G+LMW AT TRP+IA A RAVAR+C  P   H +A + I+ Y++ T    IT+G+G   GLSME + D D+ +    RRSVS G +M  +G ISW SR Q+     T+EA+Y++L+  +K+V+FL Q   FM P   +  + VF+DN+ AI+L     ++  +KH  ++HH + +    +++ + Y       AD L K L
Sbjct:   63 QDEEVVSWPFRELIGSLMWLATQTRPNIANAARAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFGRGSVAGLSMEVFADADYASKAADRRSVSGGFVMCGRGCISWFSRTQQCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHFDVRHHFIGELVGRKEISIFYVESAYQHADFLTKAL 277          
BLAST of mRNA_H-paniculata_contig4256.10878.1 vs. uniprot
Match: A0A6H5JTK6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTK6_9PHAE)

HSP 1 Score: 152 bits (384), Expect = 6.260e-42
Identity = 82/216 (37.96%), Postives = 132/216 (61.11%), Query Frame = 1
Query:   10 EEEEMTKFSYQEEVGALMWTATTTRPDIACAVRAVARFCERPGPAHKKAVIKIIQYLLHTMGCSITYGQG--CGLSMEAYTD*DFGACLDTRRSVSSGVMMLAKGAISWHSRMQKITASGTSEAKYIALSKSVKDVMFLMQAQEFMEPSMTIGAVNVFQDNERAIKLTNKKYASRRTKHIAIKHHMVRDASDVEKVRV-------AYADLLIKPLD 630
            ++EE+  + ++E +G+LMW AT TRPDIA AVRAVAR+C  P   H +A + I+ Y++ T    IT+ +G   GLSME + D D+ +    RRSVS G++M   G +SW SR QK     T+EA+Y++L+  +K+V+FL Q + F+ P   +  + V +DN+ AI+L     ++  +KHI ++HH +R+    +++ +        +AD L K L+
Sbjct:   24 QDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFADADYASKAADRRSVSGGLVMCGGGCMSWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVRRFVLPEAGMPCIPVLEDNQGAIQLAQNPISNSTSKHIDVRHHFIRELVRRKEISIFHVESAYQHADFLTKALN 239          
BLAST of mRNA_H-paniculata_contig4256.10878.1 vs. uniprot
Match: A0A6H5KPF9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPF9_9PHAE)

HSP 1 Score: 153 bits (387), Expect = 1.050e-41
Identity = 88/214 (41.12%), Postives = 124/214 (57.94%), Query Frame = 1
Query:   13 EEEMTKFSYQEEVGALMWTATTTRPDIACAVRAVARFCERPGPAHKKAVIKIIQYLLHT--MGCSITYGQGCGLSMEAYTD*DFGACLDTRRSVSSGVMMLAKGAISWHSRMQKITASGTSEAKYIALSKSVKDVMFLMQAQEFMEPSMTIGAVNVFQDNERAIKLTNKKYASRRTKHIAIKHHMVRDASDVEKVRVAY-------ADLLIKPL 627
            +EE T F ++E VG+LMW AT TRPDIA AVRAVAR+C  P   H  A + I+ Y   T  MG S   G   G S++ Y D DF +    RRSVS G++    G +SW SR QK     T+EA Y+AL   VK+++FL Q   FM P + +  + VF+DN+ AI+L     ++  +KHI ++HH +R+  + +++ V +       AD L K L
Sbjct:  122 DEEATDFPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKRVHWDAAMGILGYAKRTSYMGISFQRGTVEGFSLQGYADADFASKAADRRSVSGGIVTCGGGVVSWFSRTQKCVTLSTTEAGYVALGDVVKEILFLRQVWRFMLPKVGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVIHVPSPYQRADFLTKRL 335          
BLAST of mRNA_H-paniculata_contig4256.10878.1 vs. uniprot
Match: A0A6H5L0Z9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0Z9_9PHAE)

HSP 1 Score: 154 bits (388), Expect = 4.230e-41
Identity = 80/188 (42.55%), Postives = 120/188 (63.83%), Query Frame = 1
Query:   10 EEEEMTKFSYQEEVGALMWTATTTRPDIACAVRAVARFCERPGPAHKKAVIKIIQYLLHTMGCSITYGQG--CGLSMEAYTD*DFGACLDTRRSVSSGVMMLAKGAISWHSRMQKITASGTSEAKYIALSKSVKDVMFLMQAQEFMEPSMTIGAVNVFQDNERAIKLTNKKYASRRTKHIAIKHHMVR 567
            ++EE+  + ++E +G+LMW AT TRPDIA AVRAVAR+C  P   H +A + I+ Y++ T    IT+ +G   GLSME + D D+ +    RRSVS G++M   G ISW SR QK     T+EA+Y++L+  +K+V+FL Q   FM P   +  + VF+DN+ AI+L     ++  +KHI ++HH +R
Sbjct:  149 QDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHCRAGLGILGYVVRTSELGITFRRGSVAGLSMEVFADADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHIHVRHHFIR 336          
BLAST of mRNA_H-paniculata_contig4256.10878.1 vs. uniprot
Match: A0A6H5KQB8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQB8_9PHAE)

HSP 1 Score: 156 bits (395), Expect = 4.940e-41
Identity = 85/215 (39.53%), Postives = 131/215 (60.93%), Query Frame = 1
Query:   10 EEEEMTKFSYQEEVGALMWTATTTRPDIACAVRAVARFCERPGPAHKKAVIKIIQYLLHTMGCSITYGQG--CGLSMEAYTD*DFGACLDTRRSVSSGVMMLAKGAISWHSRMQKITASGTSEAKYIALSKSVKDVMFLMQAQEFMEPSMTIGAVNVFQDNERAIKLTNKKYASRRTKHIAIKHHMVRDASDVEKVRV-------AYADLLIKPL 627
            ++EE+  + ++E +G+LMW AT TRPDIA AVRAVAR+C  P   H +A + I+ Y++ T    IT+ +G   GLSME + D D+ +    RRSVS G++M   G ISW SR QK     T+EA+Y++L+  +K+V+FL Q   FM P   +  + VF+DN+ AI+L     ++  +KHI ++HH +R+    +++ +        +AD L K L
Sbjct:  382 QDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFIRELVGRKEISIFHVESAYQHADFLTKAL 596          
BLAST of mRNA_H-paniculata_contig4256.10878.1 vs. uniprot
Match: A0A6H5KP70_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP70_9PHAE)

HSP 1 Score: 150 bits (380), Expect = 5.720e-41
Identity = 81/215 (37.67%), Postives = 127/215 (59.07%), Query Frame = 1
Query:   10 EEEEMTKFSYQEEVGALMWTATTTRPDIACAVRAVARFCERPGPAHKKAVIKIIQYLLHTMGCSITYGQGC--GLSMEAYTD*DFGACLDTRRSVSSGVMMLAKGAISWHSRMQKITASGTSEAKYIALSKSVKDVMFLMQAQEFMEPSMTIGAVNVFQDNERAIKLTNKKYASRRTKHIAIKHHMVRDASDVEKVRVA-------YADLLIKPL 627
            E E      ++E VG+LMW AT TRPDIA AVRAVAR+C  P   H KA + I+ Y+  T    IT+ +G   G+SM+ + D D+ +    RRSVS G++M   G ++W SR QK     T+EA+Y+A++  +K+V+FL Q   FM P   +  + VF+DN+ AI++ +    +  +KHI ++HH +R+  + +++ +        +AD L K +
Sbjct:   91 ENEACADVPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADYASKATDRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITNVPTPFQHADFLTKAI 305          
BLAST of mRNA_H-paniculata_contig4256.10878.1 vs. uniprot
Match: A0A6H5JFG2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFG2_9PHAE)

HSP 1 Score: 154 bits (388), Expect = 6.690e-41
Identity = 86/214 (40.19%), Postives = 127/214 (59.35%), Query Frame = 1
Query:   13 EEEMTKFSYQEEVGALMWTATTTRPDIACAVRAVARFCERPGPAHKKAVIKIIQYLLHTMGCSITYGQGC--GLSMEAYTD*DFGACLDTRRSVSSGVMMLAKGAISWHSRMQKITASGTSEAKYIALSKSVKDVMFLMQAQEFMEPSMTIGAVNVFQDNERAIKLTNKKYASRRTKHIAIKHHMVRDASDVEKVRVAY-------ADLLIKPL 627
            +E  T+F ++E VG+LMW AT TRPDIA AVRAVAR+C  P   H  A + I+ Y   T    I++ +G   G S++ Y D DF +    RRSVS G++    GA+SW SR QK     T+EA+Y+AL   VK+++FL Q   FM P + +  + VF+DN+ AI+L     ++  +KHI ++HH +R+  + +++ V +       AD L K L
Sbjct:  233 DEVATEFPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKLVHWNAAMDILGYARRTSHFGISFQRGTVEGFSLQGYADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFMLPQVGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVIHVPSPYQRADFLTKSL 446          
BLAST of mRNA_H-paniculata_contig4256.10878.1 vs. uniprot
Match: A0A6H5L4G9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4G9_9PHAE)

HSP 1 Score: 151 bits (382), Expect = 9.920e-41
Identity = 81/215 (37.67%), Postives = 128/215 (59.53%), Query Frame = 1
Query:   10 EEEEMTKFSYQEEVGALMWTATTTRPDIACAVRAVARFCERPGPAHKKAVIKIIQYLLHTMGCSITYGQGC--GLSMEAYTD*DFGACLDTRRSVSSGVMMLAKGAISWHSRMQKITASGTSEAKYIALSKSVKDVMFLMQAQEFMEPSMTIGAVNVFQDNERAIKLTNKKYASRRTKHIAIKHHMVRDASDVEKVRVAY-------ADLLIKPL 627
            E E      ++E VG+LMW AT TRPDIA AVRAVAR+C  P   H KA + I+ Y+  T    IT+ +G   G+SM+ + D D+ +    RRSVS G++M   G ++W SR QK     T+EA+Y+A++  +K+V+FL Q   FM P  ++  + VF+DN+ AI++ +    +  +KHI ++HH +R+  + +++ + +       AD L K +
Sbjct:  146 ENEASADVPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADYASKATDRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDASMPCIPVFEDNQGAIQIMHNPITNSNSKHIDVRHHFIRELVERKEISITHVPTQFQHADFLTKAI 360          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4256.10878.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KR24_9PHAE3.100e-4242.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JLN0_9PHAE4.150e-4239.53Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KD60_9PHAE5.580e-4238.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTK6_9PHAE6.260e-4237.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KPF9_9PHAE1.050e-4141.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L0Z9_9PHAE4.230e-4142.55Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KQB8_9PHAE4.940e-4139.53Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KP70_9PHAE5.720e-4137.67Uncharacterized protein n=4 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JFG2_9PHAE6.690e-4140.19Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5L4G9_9PHAE9.920e-4137.67Reverse transcriptase Ty1/copia-type domain-contai... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4256contigH-paniculata_contig4256:8425..9066 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeOpisthokonta
Seed ortholog score73.9
Seed ortholog evalue5.3e-11
Seed eggNOG ortholog400682.PAC_15698807
Hectar predicted targeting categoryother localisation
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3A8FB@33154,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelOpisthokonta
Best eggNOG OGNA|NA|NA
Exons1
Model size642
Cds size342
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930293.7034256-UTR-H-paniculata_contig4256:8424..87241622930293.7034256-UTR-H-paniculata_contig4256:8424..8724Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4256 8425..8724 +
1691481228.8237112-UTR-H-paniculata_contig4256:8424..87241691481228.8237112-UTR-H-paniculata_contig4256:8424..8724Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4256 8425..8724 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930293.7241013-CDS-H-paniculata_contig4256:8724..90661622930293.7241013-CDS-H-paniculata_contig4256:8724..9066Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4256 8725..9066 +
1691481228.8351946-CDS-H-paniculata_contig4256:8724..90661691481228.8351946-CDS-H-paniculata_contig4256:8724..9066Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4256 8725..9066 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4256.10878.1prot_H-paniculata_contig4256.10878.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4256 8725..9066 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4256.10878.1

>prot_H-paniculata_contig4256.10878.1 ID=prot_H-paniculata_contig4256.10878.1|Name=mRNA_H-paniculata_contig4256.10878.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=114bp
MMLAKGAISWHSRMQKITASGTSEAKYIALSKSVKDVMFLMQAQEFMEPS
MTIGAVNVFQDNERAIKLTNKKYASRRTKHIAIKHHMVRDASDVEKVRVA
YADLLIKPLDMAKI
back to top

mRNA from alignment at H-paniculata_contig4256:8425..9066+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4256.10878.1 ID=mRNA_H-paniculata_contig4256.10878.1|Name=mRNA_H-paniculata_contig4256.10878.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=642bp|location=Sequence derived from alignment at H-paniculata_contig4256:8425..9066+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGACATCGGAGGAGGAGGAGATGACGAAATTCTCATATCAAGAGGAAGT GGGGGCGTTAATGTGGACGGCGACGACGACGCGACCGGATATAGCGTGCG CAGTACGTGCCGTTGCAAGGTTCTGCGAACGCCCCGGGCCAGCACACAAA AAGGCTGTGATTAAGATAATTCAGTATTTATTGCACACGATGGGATGCAG CATCACGTATGGACAAGGCTGTGGGCTTAGTATGGAAGCATATACAGACT AGGATTTCGGAGCCTGCTTGGACACTAGACGCTCGGTATCTAGTGGAGTC ATGATGTTGGCGAAGGGGGCGATAAGCTGGCACTCTAGGATGCAGAAGAT AACGGCATCGGGTACTTCGGAAGCAAAGTACATAGCACTGTCGAAATCAG TAAAGGATGTGATGTTTTTAATGCAAGCACAAGAGTTTATGGAGCCAAGT ATGACTATCGGAGCGGTGAACGTGTTCCAGGACAACGAGAGGGCTATCAA GCTAACGAACAAGAAGTACGCTAGCCGTAGGACAAAGCATATAGCTATTA AACACCATATGGTGCGGGACGCGTCGGATGTGGAAAAGGTTAGGGTAGCC TACGCGGATTTACTCATAAAGCCATTAGATATGGCTAAGATC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig4256:8425..9066+

>mRNA_H-paniculata_contig4256.10878.1 ID=mRNA_H-paniculata_contig4256.10878.1|Name=mRNA_H-paniculata_contig4256.10878.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=684bp|location=Sequence derived from alignment at H-paniculata_contig4256:8425..9066+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATGTTGGCGAAGGGGGCGATAAGCTGGCACTCTAGGATGCAGAAGAT
AACGGCATCGGGTACTTCGGAAGCAAAGTACATAGCACTGTCGAAATCAG
TAAAGGATGTGATGTTTTTAATGCAAGCACAAGAGTTTATGGAGCCAAGT
ATGACTATCGGAGCGGTGAACGTGTTCCAGGACAACGAGAGGGCTATCAA
GCTAACGAACAAGAAGTACGCTAGCCGTAGGACAAAGCATATAGCTATTA
AACACCATATGGTGCGGGACGCGTCGGATGTGGAAAAGGTTAGGGTAGCC
TACGCGGATTTACTCATAAAGCCATTAGATATGGCTAAGATCATGATGTT
GGCGAAGGGGGCGATAAGCTGGCACTCTAGGATGCAGAAGATAACGGCAT
CGGGTACTTCGGAAGCAAAGTACATAGCACTGTCGAAATCAGTAAAGGAT
GTGATGTTTTTAATGCAAGCACAAGAGTTTATGGAGCCAAGTATGACTAT
CGGAGCGGTGAACGTGTTCCAGGACAACGAGAGGGCTATCAAGCTAACGA
ACAAGAAGTACGCTAGCCGTAGGACAAAGCATATAGCTATTAAACACCAT
ATGGTGCGGGACGCGTCGGATGTGGAAAAGGTTAGGGTAGCCTACGCGGA
TTTACTCATAAAGCCATTAGATATGGCTAAGATC
back to top