mRNA_H-paniculata_contig42554.10877.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig42554.10877.1
Unique NamemRNA_H-paniculata_contig42554.10877.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig42554.10877.1 vs. uniprot
Match: B3VMZ7_FUCSE (Heat shock protein 70 (Fragment) n=1 Tax=Fucus serratus TaxID=87148 RepID=B3VMZ7_FUCSE)

HSP 1 Score: 202 bits (514), Expect = 3.350e-60
Identity = 115/141 (81.56%), Postives = 122/141 (86.52%), Query Frame = 1
Query:    1 MVEEAERYKADDDVQKQRVEGKNALENYAYAMRNTINEEKVSAQLDESDKSTIESKISETIAWLDANQSAEKEEYEEKQKELEGVCNPIIQKMA--GGGGMPXXXXXXXXDMSGAGFPGGAGGAPAPEAEADAGPKIEEID 417
            MVEEAERYKA+DDVQKQRVEGKNALENYAY+MRNTINEEKV++QLD +DKS IESKISETIAWLD NQ+AEKEEYEEKQKELEGVC PIIQKMA  GGGGMP        DM GAGFPG   GAP PEA+ADAGPKIEEID
Sbjct:  376 MVEEAERYKAEDDVQKQRVEGKNALENYAYSMRNTINEEKVASQLDAADKSAIESKISETIAWLDTNQNAEKEEYEEKQKELEGVCTPIIQKMAAAGGGGMPGGMGGMP-DMGGAGFPGA--GAPTPEADADAGPKIEEID 513          
BLAST of mRNA_H-paniculata_contig42554.10877.1 vs. uniprot
Match: A0A6H5JJT8_9PHAE (HSP70 protein n=10 Tax=Phaeophyceae TaxID=2870 RepID=A0A6H5JJT8_9PHAE)

HSP 1 Score: 205 bits (521), Expect = 4.500e-60
Identity = 123/141 (87.23%), Postives = 130/141 (92.20%), Query Frame = 1
Query:    1 MVEEAERYKADDDVQKQRVEGKNALENYAYAMRNTINEEKVSAQLDESDKSTIESKISETIAWLDANQSAEKEEYEEKQKELEGVCNPIIQKMAGGGGMPXXXXXXXX--DMSGAGFPGGAGGAPAPEAEADAGPKIEEID 417
            MVEEAERYKA+DDVQK RVEGKN+LENYAY+MRNTINEEKVSAQLDE+DK TIE+KISETIAWLDANQ+AEKEEYEEKQKELEGVCNPIIQKMAGG G  XXXXXXXX  DM GAGFP G G APAP+AEADAGPKIEEID
Sbjct:  521 MVEEAERYKAEDDVQKSRVEGKNSLENYAYSMRNTINEEKVSAQLDEADKKTIETKISETIAWLDANQNAEKEEYEEKQKELEGVCNPIIQKMAGGAGXXXXXXXXXXXXDMGGAGFPAG-GAAPAPDAEADAGPKIEEID 660          
BLAST of mRNA_H-paniculata_contig42554.10877.1 vs. uniprot
Match: A0A6H5KQY2_9PHAE (HSP70 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQY2_9PHAE)

HSP 1 Score: 169 bits (428), Expect = 2.120e-46
Identity = 112/153 (73.20%), Postives = 123/153 (80.39%), Query Frame = 1
Query:    1 MVEEAERYKADDDVQKQRVEGKNALENYAYAMRNTINEEK---------VSAQLDESDKSTIESKISETIAWLDANQSAEKEEYEEKQKELEGVCNPIIQKMAGG-GGMPXXXXXXXX----DMSGAGFPGGAGGAPAPEAEADAGPKIEEID 417
            MVEEAERYKA+DDVQK RVEGKN+LENYAY+MRNTIN+EK         V+++LD +DK+TIE+KISETIAWLD NQSAEKEEYEEKQKELE VCNPIIQKMAGG GGMPXXXXXXXX    DM GAGF           A+ADAGPKIEEID
Sbjct:  585 MVEEAERYKAEDDVQKSRVEGKNSLENYAYSMRNTINDEKAGRRVVPVKVASKLDAADKTTIETKISETIAWLDGNQSAEKEEYEEKQKELEAVCNPIIQKMAGGAGGMPXXXXXXXXXXXXDMGGAGFX-XXXXXXXXXADADAGPKIEEID 736          
BLAST of mRNA_H-paniculata_contig42554.10877.1 vs. uniprot
Match: A0A3R6YRE6_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces TaxID=100860 RepID=A0A3R6YRE6_9STRA)

HSP 1 Score: 144 bits (364), Expect = 4.130e-41
Identity = 83/144 (57.64%), Postives = 102/144 (70.83%), Query Frame = 1
Query:    1 MVEEAERYKADDDVQKQRVEGKNALENYAYAMRNTINEEKVSAQLDESDKSTIESKISETIAWLDANQSAEKEEYEEKQKELEGVCNPIIQKMAGGGGMPXXXXXXXXDMSGAGFPGG-----AGGAPAPEAEADAGPKIEEID 417
            MV+EAE+YK++D+  K R+E KN LENYAY +RNT+N+EK+  +LDESDK  I+ K++ETI WLDANQSAEKEE+E KQKELEGV NPI+QK+   GG P             G PGG     AGGAP P + A  GPKIEE+D
Sbjct:   70 MVQEAEKYKSEDEANKLRIEAKNGLENYAYNLRNTLNDEKLQGKLDESDKKAIDDKVTETINWLDANQSAEKEEFEAKQKELEGVANPIMQKLYAAGGAP-------------GGPGGMPDFGAGGAPPPASSAQ-GPKIEEVD 199          
BLAST of mRNA_H-paniculata_contig42554.10877.1 vs. uniprot
Match: A0A485KCI7_9STRA (Aste57867_4298 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KCI7_9STRA)

HSP 1 Score: 144 bits (363), Expect = 2.010e-39
Identity = 88/140 (62.86%), Postives = 109/140 (77.86%), Query Frame = 1
Query:    1 MVEEAERYKADDDVQKQRVEGKNALENYAYAMRNTINEEKVSAQLDESDKSTIESKISETIAWLDANQSAEKEEYEEKQKELEGVCNPIIQKM-AGGGGMPXXXXXXXXDMSGAGFPGGAGGAPAPEAEADAGPKIEEID 417
            MV+EAE+YK++D+  K R+E KN LENY+Y +RNT+N+EK+  ++DESDK  I+ K++ETI WLDANQSAEKEEYE KQKELEG+ NPI+QK+ A  GG PXXXXXXXXDM GA       GAP P + A  GPKIEE+D
Sbjct:  206 MVQEAEKYKSEDEANKLRIEAKNGLENYSYNLRNTLNDEKLQGKIDESDKKAIDDKVTETINWLDANQSAEKEEYEAKQKELEGIANPIMQKLYASAGGAPXXXXXXXXDMGGA-------GAPPPASHAQ-GPKIEEVD 337          
BLAST of mRNA_H-paniculata_contig42554.10877.1 vs. uniprot
Match: A0A7S4M3Z9_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4M3Z9_9EUKA)

HSP 1 Score: 134 bits (336), Expect = 1.750e-37
Identity = 77/140 (55.00%), Postives = 98/140 (70.00%), Query Frame = 1
Query:    1 MVEEAERYKADDDVQKQRVEGKNALENYAYAMRNTINEEKVSAQLDESDKSTIESKISETIAWLDANQSAEKEEYEEKQKELEGVCNPIIQKM-AGGGGMPXXXXXXXXDMSGAGFPGGAGGAPAPEAEADAGPKIEEID 417
            MV+EAE+YKA+D+  K++V+ KNALENY+Y MRNTI ++KV  +LD  DK  IE ++ + I WL+ANQ AE +E+E+K KELEG+CNPI+ KM   GGGMP        DMSG G   G  GAP P A    GPKIEE+D
Sbjct:   19 MVQEAEKYKAEDEEHKKKVDAKNALENYSYNMRNTIQDDKVGGKLDADDKKKIEEEVEKAIQWLEANQLAEVDEFEDKLKELEGICNPIMAKMYQAGGGMPGGMP----DMSGMG---GDAGAPPPSAGGACGPKIEEVD 151          
BLAST of mRNA_H-paniculata_contig42554.10877.1 vs. uniprot
Match: H6WB83_VAULI (Heat shock protein 70 n=1 Tax=Vaucheria litorea TaxID=109269 RepID=H6WB83_VAULI)

HSP 1 Score: 144 bits (362), Expect = 2.190e-37
Identity = 91/144 (63.19%), Postives = 115/144 (79.86%), Query Frame = 1
Query:    1 MVEEAERYKADDDVQKQRVEGKNALENYAYAMRNTINEEKVSAQLDESDKSTIESKISETIAWLDANQSAEKEEYEEKQKELEGVCNPIIQKMAGG-GGMPXXXXXXXX----DMSGAGFPGGAGGAPAPEAEADAGPKIEEID 417
            MVEEAERYKA+D+V KQR+E KN LENYAY++RNT+N  ++  ++D SDKS+++SKI++TI WL++NQ+AEKEEY+EKQKELE V NPI+QKMAGG GGM XXXXXXXX    DM GA     + G+  P A+A A P+IEEID
Sbjct:  521 MVEEAERYKAEDEVNKQRIEAKNGLENYAYSLRNTLNGPEIGDKMDPSDKSSLDSKINDTINWLESNQNAEKEEYQEKQKELENVANPILQKMAGGAGGMXXXXXXXXXXXXXDMGGA-----SSGSSMPTADASAEPRIEEID 659          
BLAST of mRNA_H-paniculata_contig42554.10877.1 vs. uniprot
Match: A0A7S3Y1P9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y1P9_HETAK)

HSP 1 Score: 135 bits (340), Expect = 2.190e-37
Identity = 67/98 (68.37%), Postives = 85/98 (86.73%), Query Frame = 1
Query:    1 MVEEAERYKADDDVQKQRVEGKNALENYAYAMRNTINEEKVSAQLDESDKSTIESKISETIAWLDANQSAEKEEYEEKQKELEGVCNPIIQKMAGGGG 294
            MVEEAERYKA+D+V +QR+E KN+LENYAY +++TI +EKV+ ++D  DKS +E+K+SE +AWLDANQSAEKEEYEEKQKELEGV  P+ +KMAGG G
Sbjct:   52 MVEEAERYKAEDEVNRQRIEAKNSLENYAYQIKSTIGDEKVADKIDAGDKSAVETKVSEILAWLDANQSAEKEEYEEKQKELEGVAQPVFEKMAGGAG 149          
BLAST of mRNA_H-paniculata_contig42554.10877.1 vs. uniprot
Match: A0A7S3C1F4_9VIRI (Hypothetical protein n=1 Tax=Prasinoderma singulare TaxID=676789 RepID=A0A7S3C1F4_9VIRI)

HSP 1 Score: 134 bits (337), Expect = 2.510e-37
Identity = 76/139 (54.68%), Postives = 99/139 (71.22%), Query Frame = 1
Query:    1 MVEEAERYKADDDVQKQRVEGKNALENYAYAMRNTINEEKVSAQLDESDKSTIESKISETIAWLDANQSAEKEEYEEKQKELEGVCNPIIQKMAGGGGMPXXXXXXXXDMSGAGFPGGAGGAPAPEAEADAGPKIEEID 417
            MV+EAE+YKA+D+  K+++E KN+LENYAY MRNTI ++KV+ ++D +DK TIE  + E I+W+DANQ AE +E+E + KELEGVCNPI+ KM   GG          DM GAG  GGA  A AP  E+  GPKIEE+D
Sbjct:   39 MVQEAEKYKAEDEEHKKKIEAKNSLENYAYNMRNTIKDDKVADKIDAADKETIEKAVEEAISWVDANQLAEVDEFEHRLKELEGVCNPIVSKMYAAGGGAPPGADGMPDMGGAGGFGGAA-ADAPGGESS-GPKIEEVD 175          
BLAST of mRNA_H-paniculata_contig42554.10877.1 vs. uniprot
Match: A0A3R7HFD5_9STRA (Uncharacterized protein (Fragment) n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7HFD5_9STRA)

HSP 1 Score: 133 bits (334), Expect = 3.630e-37
Identity = 82/140 (58.57%), Postives = 98/140 (70.00%), Query Frame = 1
Query:    1 MVEEAERYKADDDVQKQRVEGKNALENYAYAMRNTINEEKVSAQLDESDKSTIESKISETIAWLDANQSAEKEEYEEKQKELEGVCNPIIQKM-AGGGGMPXXXXXXXXDMSGAGFPGGAGGAPAPEAEADAGPKIEEID 417
            MV EAE+YK++D+  K R+E KNALENYAY +RNT+N+EK+  Q+ E DK  I+ K++ETI WLDANQSAEKEE+E KQKELEGV NPI+QKM A  GG P  XXXXXX           G    P    D GPKIEE+D
Sbjct:   13 MVAEAEKYKSEDEANKIRIEAKNALENYAYNLRNTLNDEKLKDQITEDDKKAIDDKVTETINWLDANQSAEKEEFEGKQKELEGVANPILQKMYAAAGGAPGAXXXXXXXXXXXXXXXXXGAGAPPAGAPDQGPKIEEVD 152          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig42554.10877.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
B3VMZ7_FUCSE3.350e-6081.56Heat shock protein 70 (Fragment) n=1 Tax=Fucus ser... [more]
A0A6H5JJT8_9PHAE4.500e-6087.23HSP70 protein n=10 Tax=Phaeophyceae TaxID=2870 Rep... [more]
A0A6H5KQY2_9PHAE2.120e-4673.20HSP70 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 ... [more]
A0A3R6YRE6_9STRA4.130e-4157.64Uncharacterized protein n=3 Tax=Aphanomyces TaxID=... [more]
A0A485KCI7_9STRA2.010e-3962.86Aste57867_4298 protein n=1 Tax=Aphanomyces stellat... [more]
A0A7S4M3Z9_9EUKA1.750e-3755.00Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]
H6WB83_VAULI2.190e-3763.19Heat shock protein 70 n=1 Tax=Vaucheria litorea Ta... [more]
A0A7S3Y1P9_HETAK2.190e-3768.37Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S3C1F4_9VIRI2.510e-3754.68Hypothetical protein n=1 Tax=Prasinoderma singular... [more]
A0A3R7HFD5_9STRA3.630e-3758.57Uncharacterized protein (Fragment) n=2 Tax=Phytoph... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig42554contigH-paniculata_contig42554:1024..1735 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score184.9
Seed ortholog evalue2.6e-44
Seed eggNOG ortholog2880.D8LI58
KEGG koko:K03283
KEGG TC1.A.33.1
KEGG Pathwayko03040,ko04010,ko04141,ko04144,ko04213,ko04612,ko04915,ko05134,ko05145,ko05162,ko05164,ko05169,map03040,map04010,map04141,map04144,map04213,map04612,map04915,map05134,map05145,map05162,map05164,map05169
KEGG ModuleM00353,M00355
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005815,GO:0005829,GO:0005856,GO:0015630,GO:0031982,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043232,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044464
EggNOG free text desc.ATP binding
EggNOG OGsCOG0443@1,KOG0101@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01009,ko03009,ko03029,ko03041,ko03051,ko03110,ko04131,ko04147,ko04516
Exons2
Model size420
Cds size420
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930293.6211855-CDS-H-paniculata_contig42554:1023..13231622930293.6211855-CDS-H-paniculata_contig42554:1023..1323Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig42554 1024..1323 -
1691481228.8009338-CDS-H-paniculata_contig42554:1023..13231691481228.8009338-CDS-H-paniculata_contig42554:1023..1323Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig42554 1024..1323 -
1622930293.649839-CDS-H-paniculata_contig42554:1615..17351622930293.649839-CDS-H-paniculata_contig42554:1615..1735Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig42554 1616..1735 -
1691481228.8137982-CDS-H-paniculata_contig42554:1615..17351691481228.8137982-CDS-H-paniculata_contig42554:1615..1735Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig42554 1616..1735 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig42554.10877.1prot_H-paniculata_contig42554.10877.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig42554 1024..1735 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig42554.10877.1

>prot_H-paniculata_contig42554.10877.1 ID=prot_H-paniculata_contig42554.10877.1|Name=mRNA_H-paniculata_contig42554.10877.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=140bp
MVEEAERYKADDDVQKQRVEGKNALENYAYAMRNTINEEKVSAQLDESDK
STIESKISETIAWLDANQSAEKEEYEEKQKELEGVCNPIIQKMAGGGGMP
GGMPGGMPDMSGAGFPGGAGGAPAPEAEADAGPKIEEID*
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mRNA from alignment at H-paniculata_contig42554:1024..1735-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig42554.10877.1 ID=mRNA_H-paniculata_contig42554.10877.1|Name=mRNA_H-paniculata_contig42554.10877.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=712bp|location=Sequence derived from alignment at H-paniculata_contig42554:1024..1735- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTGGAGGAGGCCGAGCGGTACAAGGCGGACGATGACGTACAGAAGCA GCGTGTGGAGGGCAAGAACGCGTTGGAGAACTACGCGTATGCGATGCGAA ACACCATCAACGAGGAGAAGGTAAAATGCATTGCTTTGTTTGGAATCACT TTGAATATCCAGTAATATCTAGGGGACTTGTATTTGTCATAGATCTTGTC CGGGTGTGGGGTATTTCTTTTTATACCTCGTTGGAGTACTTATCGTATTA TCTGCTCAACTCCCTGTGATGTTCGCCTGGATCTATTGTGTGGTGTAGCA TATGCAGTCCACCATGAAAAGAGCATCTCCATAATACCAGCCGATAGCAA CAGTGCCTGCTTGCTGATTCCCCACCCCCAACCCCCGGAATGTGGTTAAT TCACCCAAACAGGTTTCCGCCCAGCTGGATGAGTCGGATAAGTCTACCAT CGAGAGCAAGATCTCGGAAACCATCGCTTGGCTTGACGCCAACCAGAGTG CAGAGAAGGAGGAATACGAGGAGAAGCAAAAGGAGCTTGAGGGTGTGTGC AACCCCATCATCCAGAAGATGGCTGGTGGTGGAGGGATGCCTGGTGGTAT GCCCGGTGGTATGCCCGACATGTCTGGTGCTGGCTTCCCTGGGGGCGCGG GTGGCGCTCCTGCCCCCGAGGCCGAGGCGGATGCCGGACCCAAGATCGAG GAAATTGACTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig42554:1024..1735-

>mRNA_H-paniculata_contig42554.10877.1 ID=mRNA_H-paniculata_contig42554.10877.1|Name=mRNA_H-paniculata_contig42554.10877.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=840bp|location=Sequence derived from alignment at H-paniculata_contig42554:1024..1735- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTGGAGGAGGCCGAGCGGTACAAGGCGGACGATGACGTACAGAAGCA
GCGTGTGGAGGGCAAGAACGCGTTGGAGAACTACGCGTATGCGATGCGAA
ACACCATCAACGAGGAGAAGATGGTGGAGGAGGCCGAGCGGTACAAGGCG
GACGATGACGTACAGAAGCAGCGTGTGGAGGGCAAGAACGCGTTGGAGAA
CTACGCGTATGCGATGCGAAACACCATCAACGAGGAGAAGGTTTCCGCCC
AGCTGGATGAGTCGGATAAGTCTACCATCGAGAGCAAGATCTCGGAAACC
ATCGCTTGGCTTGACGCCAACCAGAGTGCAGAGAAGGAGGAATACGAGGA
GAAGCAAAAGGAGCTTGAGGGTGTGTGCAACCCCATCATCCAGAAGATGG
CTGGTGGTGGAGGGATGCCTGGTGGTATGCCCGGTGGTATGCCCGACATG
TCTGGTGCTGGCTTCCCTGGGGGCGCGGGTGGCGCTCCTGCCCCCGAGGC
CGAGGCGGATGCCGGACCCAAGATCGAGGAAATTGACTAAGTTTCCGCCC
AGCTGGATGAGTCGGATAAGTCTACCATCGAGAGCAAGATCTCGGAAACC
ATCGCTTGGCTTGACGCCAACCAGAGTGCAGAGAAGGAGGAATACGAGGA
GAAGCAAAAGGAGCTTGAGGGTGTGTGCAACCCCATCATCCAGAAGATGG
CTGGTGGTGGAGGGATGCCTGGTGGTATGCCCGGTGGTATGCCCGACATG
TCTGGTGCTGGCTTCCCTGGGGGCGCGGGTGGCGCTCCTGCCCCCGAGGC
CGAGGCGGATGCCGGACCCAAGATCGAGGAAATTGACTAA
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