|
|
Homology
BLAST of mRNA_H-paniculata_contig4254.10873.1 vs. uniprot
Match: D8LRG2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRG2_ECTSI) HSP 1 Score: 511 bits (1315), Expect = 3.600e-171 Identity = 244/314 (77.71%), Postives = 277/314 (88.22%), Query Frame = 1
Query: 1 MQSMTARLLAPDREG--GWFFLDNQLREPVVTNRISPSARYHNRPGIEKYRPMDNVFPKCLKGFKWDLEKLVTKLKVKLHEHAQGIAGYQFLAGCNLFRNELQE-RKGDQISAKEFRRVVEYKFGMKLDPDEALSLFHFLVPGTGDSIEIAEMVRVLVPNDYTDSWFSTRESTDMFGFQKAAPEKIVLQAKKMNVSGSWNLSLIEEKIREKIHERVGGTGVYEVQAAYGLFLDGRNTGLTKKGFKAQMHDKFSVVLSDKDVDDVFKKYDPKRTGSLDVHNFVLKIVSPEAQPEPWFRDRATYEFHVLNRAPMKK 933
MQS RLLAPDR G GWFFLDNQ+RE VVTNRISPS+RYHNRPG+E Y+P+DNVFP+CLKGFKWD+ KLV KLKVKL E A+GIAGYQFLA C LFR+E+ RKGD+ISA++FR VVEYKFGMKLD DE LSLFH+LVPGTGDSI+I+ MVRVL P+DYTDSWF+TRESTDMFGF K PEK+VLQAKKMNV GSWNL LIE KIREKI+ERVGGT ++EVQAAY LF DGRNTGLTKKGF+AQMHDKF+VVLS KDVDDVF+KYDPK TG LDVH+FV++++SP A+PEPWF ++ TYEFHVLNRAPMKK
Sbjct: 1 MQSFATRLLAPDRAGSNGWFFLDNQMREKVVTNRISPSSRYHNRPGVESYKPLDNVFPQCLKGFKWDMGKLVAKLKVKLREQAKGIAGYQFLAACKLFRSEVSSNRKGDRISAEDFRGVVEYKFGMKLDHDEVLSLFHYLVPGTGDSIDISSMVRVLEPDDYTDSWFNTRESTDMFGFTKPGPEKVVLQAKKMNVGGSWNLKLIEGKIREKIYERVGGTSLFEVQAAYTLFQDGRNTGLTKKGFQAQMHDKFAVVLSSKDVDDVFRKYDPKGTGKLDVHSFVVRLISPTAEPEPWFGNKDTYEFHVLNRAPMKK 314
BLAST of mRNA_H-paniculata_contig4254.10873.1 vs. uniprot
Match: A0A835YQE8_9STRA (EF-hand domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQE8_9STRA) HSP 1 Score: 327 bits (839), Expect = 1.430e-100 Identity = 167/334 (50.00%), Postives = 226/334 (67.66%), Query Frame = 1
Query: 1 MQSMTARLLAPDREGGWFFLDNQLREPV---VTNRISPSARYHNRPGIEKYRPM--DNVFPKCLKGFKWDLEKLVTKLKVKLHEHAQGIAGYQFLAGCNLFRNELQERKGDQISAKEFRRVVEYKFGMKLDPD----------------EALSLFHFLVPGTGDSIEIAEMVRVLVPNDYTD-SWFSTRESTDMFGFQKAAPEKIVLQAKKMNVSGSWNLSLIEEKIREKIHERVGGTG-VYEVQAAYGLFLDGRNTGLTKKGFKAQMHDKFSVVLSDKDVDDVFKKYDPKRTGSLDVHNFVLKIVSPEAQPEPWFRDRATYEFHVLNRAPMKK 933
++SM RLL P E GWF L QLR RIS SAR+ + PG+ P+ + FP L+GFKWD+ KLV KLK K++EHAQG AGY FLA C +FR+EL ERKGD I+A+EFR VV KF + D E + LF L PG G S+ I E+VR LVP DY + SWFSTR+STDM G++ P+K+VLQA++MN +W + ++E+KIREK+HER GGTG +Y+VQA Y LFLDGRN G+T++ FKA +HDKF+++L+D +VD +F+++DP+ TG LD++ FV+++V +A PEPWF+ R +Y+F RAP K+
Sbjct: 145 VRSMVRRLLQPAPEDGWFMLSAQLRADACKEAETRISESARFKHTPGVVAQDPVPTNEEFPASLRGFKWDVNKLVQKLKCKINEHAQGHAGYLFLAACKIFRHELPERKGDMITAREFRDVVRAKFSLVCDEQGVTAAHXXXXXXXXXXECIDLFEMLEPGCGGSMPITELVRRLVPRDYIERSWFSTRDSTDMPGYEHGKPDKVVLQAQEMN-KHNWTVDILEDKIREKLHERSGGTGNLYQVQATYRLFLDGRNNGVTRERFKAHLHDKFAILLTDDEVDALFRRHDPENTGQLDLYKFVMRLVGVQAPPEPWFQGRESYDFRCGRRAPHKE 477
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 511.5 |
| Seed ortholog evalue | 2.7e-142 |
| Seed eggNOG ortholog | 2880.D8LRG2 |
| Hectar predicted targeting category | other localisation |
| EggNOG free text desc. | EF-hand domain pair |
| EggNOG OGs | 2A7PW@1,2RYER@2759 |
| COG Functional cat. | S |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| Exons | 5 |
| Model size | 933 |
| Cds size | 933 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig4254.10873.1 >prot_H-paniculata_contig4254.10873.1 ID=prot_H-paniculata_contig4254.10873.1|Name=mRNA_H-paniculata_contig4254.10873.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=311bp
MQSMTARLLAPDREGGWFFLDNQLREPVVTNRISPSARYHNRPGIEKYRP
MDNVFPKCLKGFKWDLEKLVTKLKVKLHEHAQGIAGYQFLAGCNLFRNEL
QERKGDQISAKEFRRVVEYKFGMKLDPDEALSLFHFLVPGTGDSIEIAEM
VRVLVPNDYTDSWFSTRESTDMFGFQKAAPEKIVLQAKKMNVSGSWNLSL
IEEKIREKIHERVGGTGVYEVQAAYGLFLDGRNTGLTKKGFKAQMHDKFS
VVLSDKDVDDVFKKYDPKRTGSLDVHNFVLKIVSPEAQPEPWFRDRATYE
FHVLNRAPMKK back to topmRNA from alignment at H-paniculata_contig4254:12635..15760+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig4254.10873.1 ID=mRNA_H-paniculata_contig4254.10873.1|Name=mRNA_H-paniculata_contig4254.10873.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3126bp|location=Sequence derived from alignment at H-paniculata_contig4254:12635..15760+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAGTCGATGACGGCGCGATTGCTGGCGCCAGACCGAGAGGGCGGCTG
GTTTTTCTTGGACAACCAGCTTAGAGAGCCCGTGGTAACGAACCGCATAT
CTCCCTCGGCTCGATACCACAATCGCCCGGGGATAGAGAAATACAGACCC
ATGGACAACGTGTTCCCGAAATGCCTCAAAGGTTTCAAGTGAGTTGTCGA
CTGTGCCCCACGCGATAGGAGTTGCAGGAAACTGCAAGACATTCTCGCCC
AGTAATCGACGACAAGTGTTGTCCTCTGATCAGGTTCCTGCGCGTTTGAG
CGTTGGGAGACGGCGGTGGAGTGATTTCTTCACCTTCTCCCCGGGTCTAT
GGGTTTTCGGTTTTCGGGGAGTAAATTTACTTTTCACTCGACTTTCCGGC
ACTCCATGAGACGAAAATCGACCGTGTGCTCGCCAAGCGTAGAACACATG
CCATTGGAAATATATCGATTAGCGCCACTTGCTCTGCATCGCAAATACAC
AATGCACGTACGCAGTGGGCGAATAGTTGACGGTGGTTTCAGTTCGAGCC
ATACTCCGGTGCTTGGATTGTGTGTGTGCCAGATAGAACCAATTACCAGT
CAAAACGCATCTATAGTGCCTTAGTTGTTGTTCGACAATGTAGAATTTGG
ATATGTTGTCTATTTTTATGTCGTTAGTGTTGTTGTAGCATCGATTAATG
CGACTCAGAGTGCATAAGTTGGCGTTTCTTCCACTTTCGACAATGATGAG
ACACACCTGAACAGTCACTACCTTCAAGGGATAATGTTCGAAAGCTCGGT
AGAAACAACCTGCCTTATTTGACGTATCCATTTTATGCGTTGCAATTAAG
TGTGACACCTCGTTTTCTCCACGCCAATCCACACCAATTATACCTCACCC
TGCTCCTGTGAACAAAACAAAACAAATATATATTTTTGTGTGTTCACACA
CAAGGTGGGACCTGGAGAAGCTCGTGACCAAGCTGAAGGTCAAGTTGCAC
GAACATGCGCAAGGAATAGCGGGTTATCAGTTCCTTGCAGGTTGCAATCT
CTTCCGAAACGAGTTGCAGGAGAGAAAGGGAGACCAGATCAGCGCCAAGG
AGTTCCGGCGCGTGGTGGAGTACAAGTTTGGCATGAAACTGGACCCTGAT
GAGGCCTTGTCGTTGTTTCATTTTTTGGTGCCAGGGACCGGAGACTCCAT
CGAAATTGCAGAAATGGTAAGACGAGTAAATCGTCGGGCGATGGGCTTTC
TGGGATTGCAGGAAGAGAGGGGGCGGGGGGGGTTCATTGTGGCAATTCCG
GGTACTGTCAACATGGGCATATGTGATGATATCATTTAGAATCATCCTAT
ATATACCTATGTGTCGATCGGAGGATGGTATATTTGGTGTGCCGGTTGAA
CGCTCTCCCTGCATTAGTACCCACCTTTAATCAACTTTCCTTTTTTAGCA
TTGGAGCTACTTAAACGTCTAGGAAACCTGCATAATGTTGTTTGATAAGC
CGTGTCTATACAGTCACCTGAGTCTACGCCTGAGTCTACACAACGAACAG
AGTTAGGACGTCAAGCGCGCCTGTCGTTGGGGCGATTATATTCATATTAT
CTGAGATGTTTAGAGCTAGGAGAGTTGGGTTTGTCGTATTGAATAATTTA
TCGGAGATCAGTTCGATATCAAAAGATCGTCAGTACCAATGAATTGAAAC
GCGCAAGTCCCCCCCAAGAAAATCAGTTACCCCCTGACCCTTGTCCAAAA
CTCGAACCGAATTGTAGTCCAGGGCTCGGCGTTAAGTTGCCTCACAGAAT
CATGACACTCCGAGCAATAATAGCAATGACCGCTGTAACACGACAATCAA
TAGGATGGTACCCTAGGAAACGTTTGGTATGTTGTCCCGTACACCCTCCG
CGGCAGCATTTCATGTACTCAGAAGGATACGAACGCACATTTTACAACTT
CGAGATCGTGTATGCTTGCTTCACCGTTCCTCTCACCCCCGACCCTACCT
CCCTGTACCCAAAACAGCCCGAGTATACCTATTCAAAGCTCGGGAGGCAC
GTTTTGCAAGCTCAGAATGATATAATATCGAACACTTTGCCGCGGCTGGG
CGACTGACTGTCAGGTTCGAGTCCTAGTGCCAAACGATTACACCGACTCA
TGGTTCAGCACGAGGGAAAGCACTGACATGTTCGGTTTCCAAAAGGCCGC
TCCTGAGAAGATAGTTCTGCAGGCCAAGAAGATGAATGTGAGCGGCTCGT
GGAATCTGAGCTTGATAGAGGAAAAGATCCGAGAGAAGATACACGAGCGG
GTCGGCGGCACAGGCGTCTACGAGGTTTGTACTGCTCTCTTCGCCAACCA
TTGCGATTTTTCGTATTTTCTTAGTATCGCCTTGCGGGACGGTTGCAGGT
TGCATCTACACCGTGCTGTCCACTCCACCCTACCACTTCTTTTGACGCGG
TGGCGTTACGGAGTATCGGACAAATAACCCGTAGAGGTTCGAGATATCAA
CGATCCCTCTACCGTTCCGATCCGCGTGATCTATTTATGCTCTCGATTAT
TTTCATTATCGATCAAACAAACGATCACCCCACCGAATTTTTCGCGGTCG
CTTCGTCCCGATGACCCCTAGGTCCAGGCAGCATACGGCCTGTTTCTGGA
CGGGCGGAACACCGGCCTCACCAAGAAGGGTTTCAAAGCACAGATGCACG
ACAAATTTTCCGTCGTTCTTAGCGACAAGGTACGTAGTACATGACAAAAA
TCGGCCAAATCAATCTCAGATGCACACACAGAAAAAACCCAAGTAAAATT
CGAAACGCCAACACGTCCAGTGAAACGTCCGGGGGGCTAAGAGACAAAGA
GATTTATAGTGAGTTGACCACTGTGTACAGGAAACACGCACTTGATAACA
ATAATCTTACACACAACCCCCCTCCTCTCTCCCCATTTCCCTCTTAAAAA
ACGCCGTTCAGGACGTAGACGACGTCTTCAAGAAATACGATCCAAAAAGA
ACCGGATCGCTGGACGTGCACAACTTTGTGCTGAAAATCGTCAGCCCGGA
GGCGCAGCCGGAGCCGTGGTTTCGTGACAGAGCTACCTATGAATTCCATG
TGCTCAACCGCGCGCCCATGAAAAAG back to topCoding sequence (CDS) from alignment at H-paniculata_contig4254:12635..15760+ >mRNA_H-paniculata_contig4254.10873.1 ID=mRNA_H-paniculata_contig4254.10873.1|Name=mRNA_H-paniculata_contig4254.10873.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1866bp|location=Sequence derived from alignment at H-paniculata_contig4254:12635..15760+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAGTCGATGACGGCGCGATTGCTGGCGCCAGACCGAGAGGGCGGCTG
GTTTTTCTTGGACAACCAGCTTAGAGAGCCCGTGGTAACGAACCGCATAT
CTCCCTCGGCTCGATACCACAATCGCCCGGGGATAGAGAAATACAGACCC
ATGGACAACGTGTTCCCGAAATGCCTCAAAGGTTTCAAATGCAGTCGATG
ACGGCGCGATTGCTGGCGCCAGACCGAGAGGGCGGCTGGTTTTTCTTGGA
CAACCAGCTTAGAGAGCCCGTGGTAACGAACCGCATATCTCCCTCGGCTC
GATACCACAATCGCCCGGGGATAGAGAAATACAGACCCATGGACAACGTG
TTCCCGAAATGCCTCAAAGGTTTCAAGTGGGACCTGGAGAAGCTCGTGAC
CAAGCTGAAGGTCAAGTTGCACGAACATGCGCAAGGAATAGCGGGTTATC
AGTTCCTTGCAGGTTGCAATCTCTTCCGAAACGAGTTGCAGGAGAGAAAG
GGAGACCAGATCAGCGCCAAGGAGTTCCGGCGCGTGGTGGAGTACAAGTT
TGGCATGAAACTGGACCCTGATGAGGCCTTGTCGTTGTTTCATTTTTTGG
TGCCAGGGACCGGAGACTCCATCGAAATTGCAGAAATGGTGGGACCTGGA
GAAGCTCGTGACCAAGCTGAAGGTCAAGTTGCACGAACATGCGCAAGGAA
TAGCGGGTTATCAGTTCCTTGCAGGTTGCAATCTCTTCCGAAACGAGTTG
CAGGAGAGAAAGGGAGACCAGATCAGCGCCAAGGAGTTCCGGCGCGTGGT
GGAGTACAAGTTTGGCATGAAACTGGACCCTGATGAGGCCTTGTCGTTGT
TTCATTTTTTGGTGCCAGGGACCGGAGACTCCATCGAAATTGCAGAAATG
GTTCGAGTCCTAGTGCCAAACGATTACACCGACTCATGGTTCAGCACGAG
GGAAAGCACTGACATGTTCGGTTTCCAAAAGGCCGCTCCTGAGAAGATAG
TTCTGCAGGCCAAGAAGATGAATGTGAGCGGCTCGTGGAATCTGAGCTTG
ATAGAGGAAAAGATCCGAGAGAAGATACACGAGCGGGTCGGCGGCACAGG
CGTCTACGAGGTTCGAGTCCTAGTGCCAAACGATTACACCGACTCATGGT
TCAGCACGAGGGAAAGCACTGACATGTTCGGTTTCCAAAAGGCCGCTCCT
GAGAAGATAGTTCTGCAGGCCAAGAAGATGAATGTGAGCGGCTCGTGGAA
TCTGAGCTTGATAGAGGAAAAGATCCGAGAGAAGATACACGAGCGGGTCG
GCGGCACAGGCGTCTACGAGGTCCAGGCAGCATACGGCCTGTTTCTGGAC
GGGCGGAACACCGGCCTCACCAAGAAGGGTTTCAAAGCACAGATGCACGA
CAAATTTTCCGTCGTTCTTAGCGACAAGGTCCAGGCAGCATACGGCCTGT
TTCTGGACGGGCGGAACACCGGCCTCACCAAGAAGGGTTTCAAAGCACAG
ATGCACGACAAATTTTCCGTCGTTCTTAGCGACAAGGACGTAGACGACGT
CTTCAAGAAATACGATCCAAAAAGAACCGGATCGCTGGACGTGCACAACT
TTGTGCTGAAAATCGTCAGCCCGGAGGCGCAGCCGGAGCCGTGGTTTCGT
GACAGAGCTACCTATGAATTCCATGTGCTCAACCGCGCGCCCATGAAAAA
GGACGTAGACGACGTCTTCAAGAAATACGATCCAAAAAGAACCGGATCGC
TGGACGTGCACAACTTTGTGCTGAAAATCGTCAGCCCGGAGGCGCAGCCG
GAGCCGTGGTTTCGTGACAGAGCTACCTATGAATTCCATGTGCTCAACCG
CGCGCCCATGAAAAAG back to top
|