mRNA_H-paniculata_contig4252.10864.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4252.10864.1
Unique NamemRNA_H-paniculata_contig4252.10864.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4252.10864.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4252contigH-paniculata_contig4252:1026..1536 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Exons2
Model size202
Cds size201
Hectar predicted targeting categoryother localisation
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930292.3867817-CDS-H-paniculata_contig4252:1025..11451622930292.3867817-CDS-H-paniculata_contig4252:1025..1145Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4252 1026..1145 -
1691481228.3231492-CDS-H-paniculata_contig4252:1025..11451691481228.3231492-CDS-H-paniculata_contig4252:1025..1145Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4252 1026..1145 -
1622930292.4068365-CDS-H-paniculata_contig4252:1455..15361622930292.4068365-CDS-H-paniculata_contig4252:1455..1536Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4252 1456..1536 -
1691481228.332928-CDS-H-paniculata_contig4252:1455..15361691481228.332928-CDS-H-paniculata_contig4252:1455..1536Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4252 1456..1536 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4252.10864.1prot_H-paniculata_contig4252.10864.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4252 1026..1536 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4252.10864.1

>prot_H-paniculata_contig4252.10864.1 ID=prot_H-paniculata_contig4252.10864.1|Name=mRNA_H-paniculata_contig4252.10864.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=67bp
RKKRVRGFGGAIFFSNEETAPLFSSPQVMNGHELSLRQSPTGGHRGANDV
EDQGETWMTTSGILDR*
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mRNA from alignment at H-paniculata_contig4252:1026..1536-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4252.10864.1 ID=mRNA_H-paniculata_contig4252.10864.1|Name=mRNA_H-paniculata_contig4252.10864.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=511bp|location=Sequence derived from alignment at H-paniculata_contig4252:1026..1536- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGGAAAAAACGTGTGCGTGGGTTTGGTGGTGCTATATTTTTCAGCAATGA
AGAAACCGCACCGCTTTTCTCTTCACCACAGGTATGTGCCGAGGAGTTGG
TGAGGTTTCACGTTGTACGGCGTATCACCTGTCACTTCAATTGTCAAAAG
TTATTTTTTTCCGTTTTCCCTGTAATTTGCGCTGACAACTGATCGCCAGG
TTAGGCTTCGAAAAACTTCGACATTGCTGGCGGAAAGCATAAATCCTCCA
ACTCCTTGCGGCAATATCATCAGTTGTACGATTCCTTTCCCACTTCCAAG
TCGAACCCATCAAGTGTCGGTTGCCACCTTGTTGAGACCGAATGAAACGC
TTGATTACGATCGTTCTACACATCATGCTCGCAAAACGTAGGTGATGAAC
GGGCATGAACTTTCCCTGAGGCAATCTCCTACTGGCGGTCATCGTGGAGC
CAACGACGTGGAAGATCAGGGCGAAACGTGGATGACCACCTCGGGAATAT
TAGATCGGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig4252:1026..1536-

>mRNA_H-paniculata_contig4252.10864.1 ID=mRNA_H-paniculata_contig4252.10864.1|Name=mRNA_H-paniculata_contig4252.10864.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=402bp|location=Sequence derived from alignment at H-paniculata_contig4252:1026..1536- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGGAAAAAACGTGTGCGTGGGTTTGGTGGTGCTATATTTTTCAGCAATGA
AGAAACCGCACCGCTTTTCTCTTCACCACAGCGGAAAAAACGTGTGCGTG
GGTTTGGTGGTGCTATATTTTTCAGCAATGAAGAAACCGCACCGCTTTTC
TCTTCACCACAGGTGATGAACGGGCATGAACTTTCCCTGAGGCAATCTCC
TACTGGCGGTCATCGTGGAGCCAACGACGTGGAAGATCAGGGCGAAACGT
GGATGACCACCTCGGGAATATTAGATCGGTGAGTGATGAACGGGCATGAA
CTTTCCCTGAGGCAATCTCCTACTGGCGGTCATCGTGGAGCCAACGACGT
GGAAGATCAGGGCGAAACGTGGATGACCACCTCGGGAATATTAGATCGGT
GA
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