mRNA_H-paniculata_contig4251.10862.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
|
Overview
Homology
BLAST of mRNA_H-paniculata_contig4251.10862.1 vs. uniprot
Match: D7FQY5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQY5_ECTSI) HSP 1 Score: 195 bits (496), Expect = 8.500e-57 Identity = 93/181 (51.38%), Postives = 124/181 (68.51%), Query Frame = 1
Query: 1 PKILSGCLHTVCQSCAEEAFQRSDSPTVLPCPICSVSTIGVSTTSSLTDNVMALQDVKRWSRNCEFCNEVVRASHRCVDCQSIICGFHLKHHTRSRATKAHKILPLKARGLGNIPPLASPASKPYNVPIFCPRHDGVLVKLFCSEPCGQLICYDCSVAEHSGHSIFLADSPEVEVTHRTRL 543
PK+L GCLHT+CQ+CAEE QRS + + CP+C VST V++TS+L DN++ALQDV R + +C+FC++V +ASH C +C S++C FH+ H+ SR TK+H+++ LK R + V I C RH V KLFCSEPCG IC++CSVAEHSGHS+F +DS EVE HR L
Sbjct: 36 PKVLKGCLHTICQNCAEEGLQRSKDGSSIMCPLCGVSTSDVTSTSALQDNIVALQDVHRKNSHCDFCDDVAKASHVCHECASLLCTFHMTAHSVSRGTKSHRVVSLKNREAS------------HRVQITCARHRDVEAKLFCSEPCGTTICHNCSVAEHSGHSVFFSDSAEVEQVHRAGL 204
BLAST of mRNA_H-paniculata_contig4251.10862.1 vs. uniprot
Match: A0A8J1Y5Q6_OWEFU (Ofus.G151695 protein n=1 Tax=Owenia fusiformis TaxID=6347 RepID=A0A8J1Y5Q6_OWEFU) HSP 1 Score: 67.0 bits (162), Expect = 1.010e-9 Identity = 56/181 (30.94%), Postives = 82/181 (45.30%), Query Frame = 1
Query: 1 PKILSGCLHTVCQSCAEEAFQ--RSDSPTVLPCPICS---------VSTIGVSTTSSLTDNVMALQDVKRWSRN--CEFC---NEVVRASHRCVDCQSIICGFHLKHHTRSRATKAHKILPLKARGLGNIPPLASPASKPY-NVPIFCPRHDGVLVKLFCSEPCGQLICYDCSVAEHSGHS 492
PK ++ C H+ C+ C + + ++ PCP+C+ G + T ++ Q K +RN C+ C E V A RCV+C +C K H RSRAT++H I L G+ A A Y I CP+H ++ FC + +IC DCS+ EH GHS
Sbjct: 30 PKSIT-CGHSFCKGCIGKWMKEHKAKGNDRYPCPVCNEQLEIPKNGADAYGTNITIKSMVEILENQLTKGQNRNVNCDICIQEGEAVPAMSRCVECAEHMCKHCNKAHRRSRATQSHTIYGLT----GDAEKDARAALDNYIKRNIECPKHPDQPLRFFCKQD-KAVICRDCSITEHPGHS 204
BLAST of mRNA_H-paniculata_contig4251.10862.1 vs. uniprot
Match: A0A8J9ZR80_BRALA (TRIM3 protein n=2 Tax=Branchiostoma lanceolatum TaxID=7740 RepID=A0A8J9ZR80_BRALA) HSP 1 Score: 63.2 bits (152), Expect = 2.350e-8 Identity = 42/163 (25.77%), Postives = 70/163 (42.94%), Query Frame = 1
Query: 1 PKILSGCLHTVCQSCAEEAFQRSDSPTVLPCPICSVSTIGVSTTSSLTDNVMALQDVK--------RWSRNCEFCNEVVRASHRCVDCQSIICGFHLKHHTRSRATKAHKILPLKARGLGNIPPLASPASKPYNVPIFCPRHDGVLVKLFCSEPCGQLICYDC 465
PK+L CLHT C++C + + ++ V CP+ + L DNV+ + + S C C+ ++ ASHRC+DCQ +C H + + H++ + + P++C +H G ++LFC E G L C C
Sbjct: 22 PKLLP-CLHTFCETCIFKVREGTEKGKVFSCPVETCKEEVAKGEDDLQDNVLVANIINAKSVACATKGSVKCTSCDNLLEASHRCLDCQRFLCVNCHAAHKHMQIFRRHRMQDISE---------FFRQQQAQKRPLYCTKHQGETLELFC-ETSGMLCCTKC 173
BLAST of mRNA_H-paniculata_contig4251.10862.1 vs. uniprot
Match: A0A0F8B4S9_LARCR (Tripartite motif-containing protein 16 n=1 Tax=Larimichthys crocea TaxID=215358 RepID=A0A0F8B4S9_LARCR) HSP 1 Score: 59.7 bits (143), Expect = 3.570e-7 Identity = 48/184 (26.09%), Postives = 73/184 (39.67%), Query Frame = 1
Query: 19 CLHTVCQSCAEEAFQRSDSPTVLPCPICSVSTIGVSTTSSLTDNVMALQDVKRWS---------------RNCEFCN-EVVRASHRCVDCQSIICGFHLKHHTRSRATKAHKILPLKARGLGNIPPLASPASKPYNVPIFCPRHDGVLVKLFCSEPCGQLICYDCSVAEHSGHSIFLADSPEVE 522
C H+ C +C + + D + CP C + I T ++D+K+ +C+FC ++A C+ CQ C HL+ H S A HK++ + NI C H+ V+ K+FC Q ICY CS+ EH GH I +A+ E
Sbjct: 29 CGHSYCMNCIKSHWDEEDQKEIHSCPQCRQTFIPRPVLVKNTMLADLVEDLKKTGLQAAPADQCYAGPEDESCDFCTGRKLKAVKSCLQCQVSYCEQHLQPHYESPAFDKHKLVDPSKKLQENI----------------CSWHNEVM-KIFCRTD-QQCICYLCSMDEHKGHDIVVAEGERTE 194
BLAST of mRNA_H-paniculata_contig4251.10862.1 vs. uniprot
Match: UPI0016044AEC (E3 ubiquitin-protein ligase TRIM33-like n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=UPI0016044AEC) HSP 1 Score: 58.5 bits (140), Expect = 5.060e-7 Identity = 40/165 (24.24%), Postives = 72/165 (43.64%), Query Frame = 1
Query: 1 PKILSGCLHTVCQSCAEEAFQRSDSPT--VLPCPICSVSTIGVSTTSSLTDNVMALQDVK--------RWSRNCEFCNEVVRASHRCVDCQSIICGFHLKHHTRSRATKAHKILPLKARGLGNIPPLASPASKPYNVPIFCPRHDGVLVKLFCSEPCGQLICYDC 465
PK+L CLHT C++C + + +++ V CP+ + L DN++ + + + C C+ ++ ASHRC+DCQ +C H + + H++ + + P++C +H G +++LFC E G L C C
Sbjct: 22 PKLLP-CLHTFCETCIFKVQEGTENEKGKVFSCPVETCKEEVAKGEDDLPDNILVANIINAKSVACAAKGTVKCTSCDNLLEASHRCLDCQRFLCVNCHAAHKHMQIFRRHRMQDISEFFC---------QQQAQKRPLYCTKHQGEILELFC-ETSGMLCCSKC 175
BLAST of mRNA_H-paniculata_contig4251.10862.1 vs. uniprot
Match: UPI000F5DED6C (tripartite motif-containing protein 16-like n=1 Tax=Larimichthys crocea TaxID=215358 RepID=UPI000F5DED6C) HSP 1 Score: 58.9 bits (141), Expect = 5.520e-7 Identity = 48/184 (26.09%), Postives = 73/184 (39.67%), Query Frame = 1
Query: 19 CLHTVCQSCAEEAFQRSDSPTVLPCPICSVSTIGVSTTSSLTDNVMALQDVKRWSR---------------NCEFCN-EVVRASHRCVDCQSIICGFHLKHHTRSRATKAHKILPLKARGLGNIPPLASPASKPYNVPIFCPRHDGVLVKLFCSEPCGQLICYDCSVAEHSGHSIFLADSPEVE 522
C H+ C +C + + D + CP C + I T ++D+K+ +C+FC ++A C+ CQ C HL+ H S A HK++ + NI C H+ V+ K+FC Q ICY CS+ EH GH I +A+ E
Sbjct: 29 CGHSYCMNCIKSHWDEEDQKEIHSCPQCRQTFIPRPVLVKNTMLADLVEDLKKTGLQAAPADQCYAGPEDVSCDFCTGRKLKAVKSCLQCQVSYCEQHLQPHYESPAFDKHKLVDPSKKLQENI----------------CSWHNEVM-KIFCRTD-QQCICYLCSMDEHKGHDIVVAEGERTE 194
BLAST of mRNA_H-paniculata_contig4251.10862.1 vs. uniprot
Match: UPI001604104B (tripartite motif-containing protein 3-like n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=UPI001604104B) HSP 1 Score: 58.5 bits (140), Expect = 8.790e-7 Identity = 40/165 (24.24%), Postives = 72/165 (43.64%), Query Frame = 1
Query: 1 PKILSGCLHTVCQSCAEEAFQRSDSPT--VLPCPICSVSTIGVSTTSSLTDNVMALQDVK--------RWSRNCEFCNEVVRASHRCVDCQSIICGFHLKHHTRSRATKAHKILPLKARGLGNIPPLASPASKPYNVPIFCPRHDGVLVKLFCSEPCGQLICYDC 465
PK+L CLHT C++C + + +++ V CP+ + L DN++ + + + C C+ ++ ASHRC+DCQ +C H + + H++ + + P++C +H G +++LFC E G L C C
Sbjct: 22 PKLLP-CLHTFCETCIFKVQEGTENEKGKVFSCPVETCKEEVAKGEDDLPDNILVANIINAKSVACAAKGTVKCTSCDNLLEASHRCLDCQRFLCVNCHAAHKHMQIFRRHRMQDISEFFC---------QQQAQKRPLYCTKHQGEILELFC-ETSGMLCCSKC 175
BLAST of mRNA_H-paniculata_contig4251.10862.1 vs. uniprot
Match: UPI001884DC3C (E3 ubiquitin-protein ligase TRIM33-like n=1 Tax=Pollicipes pollicipes TaxID=41117 RepID=UPI001884DC3C) HSP 1 Score: 53.5 bits (127), Expect = 4.710e-5 Identity = 45/178 (25.28%), Postives = 71/178 (39.89%), Query Frame = 1
Query: 1 PKILSGCLHTVCQSCAEEAFQRSDSPTVLPCPICSVSTIGVSTTSSLTDNVMALQDVKRWSRNCEFCNEV---VRASHRCVDCQSIICGFHLKHHTRSRATKAHKILPLKARGLGNIPPLASPASKPYNVPIFCPRHDGVLVKLFCSEPCGQLICYDCSVAEHSGHSIFLADSPEVEV 525
PK+L+GCLHTVC C ++ L C IC S+ + L ++ Q + SR C C E A+ C +C + +C ++ H R+R T H+I + ++ CP+H +C + C + C DC + H H + EV
Sbjct: 38 PKLLTGCLHTVCAPCGQQCNSGG-----LECQICMTSSPTL-LDHPLVQELLQQQHEGQGSRLCGQCTERGSRAAAAGTCDECSTDLCTVCIQAHQRTRVTWDHRIAMHQDTATDDL----------------CPKHQKTYDN-YC-DTCRTVGCGDCILFSHRSHKSRTLQEKDAEV 191
BLAST of mRNA_H-paniculata_contig4251.10862.1 vs. uniprot
Match: UPI0018855882 (E3 ubiquitin-protein ligase TRIM33-like n=1 Tax=Pollicipes pollicipes TaxID=41117 RepID=UPI0018855882) HSP 1 Score: 53.1 bits (126), Expect = 5.710e-5 Identity = 49/186 (26.34%), Postives = 77/186 (41.40%), Query Frame = 1
Query: 1 PKILSGCLHTVCQSCAEEAFQRSDSPTVLPCPICSVSTIGVSTTSSLTDNVMALQDVKRWSRNCEFCNE---VVRASHRCVDCQSIICGFHLKHHTRSRATKAHKILPLKARGLGNIPPLASPASKPYNVPIFCPRHDGVLVKLFCSEPCGQLICYDCSVAEHSGHS--IFLADSPEVEVTHRTRL 543
PK+L+GCLHTVC CA++ C +C S+ + L + ++ Q ++ SR C C E AS C +C + +C ++ H ++ T H NI ++ C H +C + C L C +C ++ H H LA EV+ T +TRL
Sbjct: 89 PKLLTGCLHTVCAPCAQQCSSAG-----FQCQLCMTSSPSL-LDHPLVEELLQRQHEEQRSRLCGQCAERGGQAAASGTCTECSTDLCNVCIQAHRVTKPTWGH-----------NIDVCQDSCAQQQ-----CSSHYKTFDN-YC-DTCNTLGCGECILSAHRSHQSCTLLAKDAEVKETLKTRL 250
BLAST of mRNA_H-paniculata_contig4251.10862.1 vs. uniprot
Match: UPI001C920A7D (mucin-19-like n=1 Tax=Amphibalanus amphitrite TaxID=1232801 RepID=UPI001C920A7D) HSP 1 Score: 52.8 bits (125), Expect = 9.160e-5 Identity = 46/178 (25.84%), Postives = 74/178 (41.57%), Query Frame = 1
Query: 1 PKILSGCLHTVCQSCAEEAFQRSDSPTVLPCPICSVSTIGVSTTSSLTDNVMALQDVKRWSRNCEFCNEVVR---ASHRCVDCQSIICGFHLKHHTRSRATKAHKILPLKARGLGNIPPLASPASKPYNVPIFCPRHDGVLVKLFCSEPCGQLICYDCSVAEHSGHSIFLADSPEVEV 525
P++L GCLHTVC SCA S +P C +C + V L + ++ + V++ SR C C E R A+ C +C + +C ++ H +++ T H I A + CP H +C + C + C DC ++ H H + + EV
Sbjct: 61 PRLLPGCLHTVCGSCAGNL---SSNPDGFQCRLCMTKSAEV-LDHPLVEELLQREHVQQCSRLCGQCGERGREAIAAGACAECCTELCQDCIEAHNQTKLTWDHSIT----------------AYNDDSAHQRCPEHRKAYDN-YC-DTCQTVGCGDCILSSHRSHKSSTLEHKQAEV 216 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4251.10862.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 10
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig4251.10862.1 >prot_H-paniculata_contig4251.10862.1 ID=prot_H-paniculata_contig4251.10862.1|Name=mRNA_H-paniculata_contig4251.10862.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=181bp PKILSGCLHTVCQSCAEEAFQRSDSPTVLPCPICSVSTIGVSTTSSLTDNback to top mRNA from alignment at H-paniculata_contig4251:2350..2892- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig4251.10862.1 ID=mRNA_H-paniculata_contig4251.10862.1|Name=mRNA_H-paniculata_contig4251.10862.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=543bp|location=Sequence derived from alignment at H-paniculata_contig4251:2350..2892- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig4251:2350..2892- >mRNA_H-paniculata_contig4251.10862.1 ID=mRNA_H-paniculata_contig4251.10862.1|Name=mRNA_H-paniculata_contig4251.10862.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1086bp|location=Sequence derived from alignment at H-paniculata_contig4251:2350..2892- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |