mRNA_H-paniculata_contig4250.10861.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4250.10861.1
Unique NamemRNA_H-paniculata_contig4250.10861.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4250.10861.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4250contigH-paniculata_contig4250:10130..12784 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size359
Cds size279
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4250.10861.1prot_H-paniculata_contig4250.10861.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4250 10162..12736 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930291.816097-UTR-H-paniculata_contig4250:10129..101611622930291.816097-UTR-H-paniculata_contig4250:10129..10161Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4250 10130..10161 +
1691481228.0836558-UTR-H-paniculata_contig4250:10129..101611691481228.0836558-UTR-H-paniculata_contig4250:10129..10161Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4250 10130..10161 +
1622930291.86852-UTR-H-paniculata_contig4250:12736..127841622930291.86852-UTR-H-paniculata_contig4250:12736..12784Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4250 12737..12784 +
1691481228.1116068-UTR-H-paniculata_contig4250:12736..127841691481228.1116068-UTR-H-paniculata_contig4250:12736..12784Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4250 12737..12784 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930291.832735-CDS-H-paniculata_contig4250:10161..101721622930291.832735-CDS-H-paniculata_contig4250:10161..10172Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4250 10162..10172 +
1691481228.0931594-CDS-H-paniculata_contig4250:10161..101721691481228.0931594-CDS-H-paniculata_contig4250:10161..10172Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4250 10162..10172 +
1622930291.8511665-CDS-H-paniculata_contig4250:12468..127361622930291.8511665-CDS-H-paniculata_contig4250:12468..12736Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4250 12469..12736 +
1691481228.1023216-CDS-H-paniculata_contig4250:12468..127361691481228.1023216-CDS-H-paniculata_contig4250:12468..12736Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4250 12469..12736 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4250.10861.1

>prot_H-paniculata_contig4250.10861.1 ID=prot_H-paniculata_contig4250.10861.1|Name=mRNA_H-paniculata_contig4250.10861.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=93bp
MAASAKHRVTGGRATTRARKTLGHLLGKQAAKTTTETVIVVSKVGKRMVA
AAAQADTTGGTCEGPRVAHLLLRRSRRSMRQRGLGRKGAARC*
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mRNA from alignment at H-paniculata_contig4250:10130..12784+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4250.10861.1 ID=mRNA_H-paniculata_contig4250.10861.1|Name=mRNA_H-paniculata_contig4250.10861.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2655bp|location=Sequence derived from alignment at H-paniculata_contig4250:10130..12784+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGGGGCGCGAGCGTGGGCGTCGGAGGCCAAGGATGGCGGCGAGGTAGATA
TGGGTGGTGGGGAGCGGGGGTCTGGCCTCTCGTTCTACGATAGATAGGAG
ATATTACCCGCATTTTTGGCACGATAACTCGCTGTTTGGGGGGGAGGGGC
TTGAAAACGATATTTATGAAAGTAAATTTTGTATACAATATCGGAACAAA
TTAAAAAAAGCAAAGCCAGCAGAGTTGACGCGGTCAAGGTATATGTGTGG
TTTAACCACTCTCCTCGCAAAAAGTTCTTCCAAGAGTGACTTACTCTTTT
ACTGTTGTCGCAGGACTACTCCAGGAAGCACGAACAGGGATATCATTGTT
CGTTTGCGGGTCTACCGCAGAGAACATCCCATCCATGGAGCGAGCATCAC
CCCCTACCCTCTCTTTGACTCAACTAAAAATGCATAAATTTGAAATGAAG
GTGGCGAGACTACATAAGAAATCACCTCTTAAGAAACCGAGGCTCGTGTT
TTTTTAGATTTAAAAAAATTCATACTGAGAAATTGTGCTTAGATCAAGGC
GACAATAAGGATTAGAAATCGAGAGATGCAAAAGGGTCGGCAAATAAGAA
TCTGCCATATACACCGCAGCCCAGAGCAATAAGCTTCAAGCTTGATTGGT
TGTACTGACTGTAGTACAGTATTGTAGTACATTACAGTATTGTACAATAC
AGCCAGCCGTAACAGCAAATTTGACGTCGAAGAAAGTGCTCAATACTTTT
GTCTTAATACTCTAGTGTTTACTTGTATTACGTCGTTTTTTGCTCTACTG
TACTGTACTGTACTGTACAGGTGGCGACACTAGTGTTCAATATCTTTTTA
CCGTATTCTACGAGGCCTGTTGTAGGTGATTTGACTTGAGCAACGCTGGA
GAAAAAATAATAATAATGTATGTCTTACTGCGCTGTACCGCATCCGTTCG
CAGAATGAGAAATTGCATCAAGAAATTCATCATTGCACACGTTCGGAAAA
TAAGAAATTGGCTTCAAGAAATTATGCTCGGCTCAGACATGAAATAAGCC
ACGAGCCTCGCCCCAAATAAGATTTTCTCATGTGGTGTCGCCACCTGGAT
CTCTTTCAGCTAACTTTCGATATACCAAGTAGGTTCCACCGACCCATTTC
TCTGAAGCTGATTTGCGAATTTCGAACTCTCCCATGTGTTCAATTCTTAG
TTTGTTTTACCAGACCGACCCTCAGGTAGTTCAGTTACGGGGGTTCCGAA
GTTAGTTGAAACTTGGAAGTTCGAGCCTTATAAGATTTTCGTGCGACGTC
AACTGAATGGTGGTTGCTGTTATTTTTCAGATAATGACGTATCACCGAAC
GGTAGGGCTGTATAGCGGCGCTGATACCATCAAAATACACAAACAGCTTC
TTCTAGCGAGTTATTAGATGGGTCGAATCCCACCAGTGATGTATCTCCCG
TTTTTCCATCGTAGTTTAATGTAAGACAGCTGATAAGAAACGCCTCCGAA
TCGCACTACAACAGTCACAATAACATGAGCAATTTGCAGGGTAAGGACAA
GCACACAATAGTGGAGCGCGGCCAGGCGAGAGCCCCGCCGACTAACTATT
TTTTCGCAACAAAGTTGGATGCATTTTTTTATTTTTCAACCTTCGCGTGT
AGGTTTTTCTCAATACCGTCTTTTTTTCTGGCCGGCTTTGTGCTCGATTT
GAACGTAGATGAAGCCAAATTGTGTCGTCTTTTTGCCTCGGGCGGCAACT
CCAGGGGAGACAAAGATGACCATTGGGTTCTTGAGATGGTGGTGCGGTTA
TGCACATATTTCGGGCACGCACATGCCAGCACTTGATATTCTATTTGAGC
AGCTCCCTTCGCACTCCTTTCGGTCCTGCGCGAGAGCCAAGCCTGAAAAA
TGCTACGGCTGTAGAGCTATTGCTCACCGACACGTTGTTGTGTTCGCTGG
TCATTGAACCATAGCCCACGTTTTCTTGCGGTTCAGTGAAATCACACGAA
CTTTTAAAGACGGGGTAGTACAGAGTCTTATCTGCATTTCCGTCGCCATT
CAGAGCGAAGCAACGCAAAGCAACGAAATGTAAACCGAACAAAAGGCAAT
ACTATCACTTGATGCCGCACCCCACCCCCCTCTCCCTGCGTGCCCACAGT
TATTCAAAATTGAACCCCAACATGTACATGTACCAAAGAAAGACGACAGA
TTCAGACAAGCATGAAAGCAGAAAACGGATCGACCGGTCAGTAACGGTTC
GCAAATTTACGTGTATCTTTCCATCAGATCCCCATCTCTACGCCACTACC
CCCCCCCTGCCTCCCTCGCTTTCGCTTTTCACATCGCAGCGCAAAACATC
GAGTCACGGGGGGGAGGGCAACGACCAGAGCGAGAAAGACTCTGGGCCAC
CTCCTTGGGAAACAAGCCGCGAAAACAACAACAGAGACAGTAATCGTAGT
ATCGAAGGTCGGGAAACGCATGGTGGCGGCGGCAGCGCAAGCGGATACGA
CAGGGGGGACTTGCGAGGGGCCGAGGGTGGCGCACTTGCTACTGCGGCGG
AGTCGAAGGTCGATGCGTCAGCGGGGTTTAGGTCGGAAGGGGGCAGCGAG
GTGTTGATGTTTGGCTGATGGGAGGAGAGCGCCCGCGCTGAGGGGGGGAA
GCGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig4250:10130..12784+

>mRNA_H-paniculata_contig4250.10861.1 ID=mRNA_H-paniculata_contig4250.10861.1|Name=mRNA_H-paniculata_contig4250.10861.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=558bp|location=Sequence derived from alignment at H-paniculata_contig4250:10130..12784+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCGGCGAGATGGCGGCGAGCGCAAAACATCGAGTCACGGGGGGGAGG
GCAACGACCAGAGCGAGAAAGACTCTGGGCCACCTCCTTGGGAAACAAGC
CGCGAAAACAACAACAGAGACAGTAATCGTAGTATCGAAGGTCGGGAAAC
GCATGGTGGCGGCGGCAGCGCAAGCGGATACGACAGGGGGGACTTGCGAG
GGGCCGAGGGTGGCGCACTTGCTACTGCGGCGGAGTCGAAGGTCGATGCG
TCAGCGGGGTTTAGGTCGGAAGGGGGCAGCGAGGTGTTGACGCAAAACAT
CGAGTCACGGGGGGGAGGGCAACGACCAGAGCGAGAAAGACTCTGGGCCA
CCTCCTTGGGAAACAAGCCGCGAAAACAACAACAGAGACAGTAATCGTAG
TATCGAAGGTCGGGAAACGCATGGTGGCGGCGGCAGCGCAAGCGGATACG
ACAGGGGGGACTTGCGAGGGGCCGAGGGTGGCGCACTTGCTACTGCGGCG
GAGTCGAAGGTCGATGCGTCAGCGGGGTTTAGGTCGGAAGGGGGCAGCGA
GGTGTTGA
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