mRNA_H-paniculata_contig4250.10859.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig4250.10859.1 vs. uniprot
Match: D7FI94_ECTSI (Intrafragellar transpot 52, osm-6-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI94_ECTSI) HSP 1 Score: 165 bits (417), Expect = 5.190e-45 Identity = 106/152 (69.74%), Postives = 110/152 (72.37%), Query Frame = 1
Query: 1 FLNSGGSAAFLLGEGGEDRLGTNVNYLLEEYGMTVHKDSVARTTYHKYMHPKEAFISHGILNPEIVRMKDTASLSRRGXXXXXXXXXXXXXXXGRLDSSISSPSSVSRGKSKGA------ADDAGAVSANEGG-GGLTFVYPYGATMTVQSP 435
+L SGGSA FLLGEGGE+RLGTNVNYLLEEYGMTVHKDSVAR TYHKYMHPKEAFISHGILNPEI RMKD ASLSRRG XXXXXXXXXX DDAGAV + + G GGLTFVYPYGATMTVQSP
Sbjct: 81 YLRSGGSAVFLLGEGGEERLGTNVNYLLEEYGMTVHKDSVARATYHKYMHPKEAFISHGILNPEIARMKDAASLSRRGGHSSKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDDAGAVPSGDAGHGGLTFVYPYGATMTVQSP 232
BLAST of mRNA_H-paniculata_contig4250.10859.1 vs. uniprot
Match: A0A836CAI6_9STRA (Intrafragellar transport 52, osm-6-like protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAI6_9STRA) HSP 1 Score: 125 bits (313), Expect = 8.170e-31 Identity = 69/145 (47.59%), Postives = 87/145 (60.00%), Query Frame = 1
Query: 1 FLNSGGSAAFLLGEGGEDRLGTNVNYLLEEYGMTVHKDSVARTTYHKYMHPKEAFISHGILNPEIVRMKDTASLSRRGXXXXXXXXXXXXXXXGRLDSSISSPSSVSRGKSKGAADDAGAVSANEGGGGLTFVYPYGATMTVQSP 435
+LN GGS A LL EGGE LGTNVNYLLEE+G+ VH DSV RT ++KY+HPKE F+SHG+LNPE+ RMK+ ++ +G R +S G + D A GGG L FVYPYGA++TVQ+P
Sbjct: 71 YLNGGGSVAVLLAEGGEGHLGTNVNYLLEEFGVAVHADSVVRTAFYKYLHPKEVFVSHGVLNPELARMKNRCAVGTKG-----------------------------RTRSAGQSRDLDADDVANGGG-LAFVYPYGASLTVQAP 185
BLAST of mRNA_H-paniculata_contig4250.10859.1 vs. uniprot
Match: A0A7S3XU22_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XU22_HETAK) HSP 1 Score: 113 bits (283), Expect = 1.450e-29 Identity = 66/140 (47.14%), Postives = 83/140 (59.29%), Query Frame = 1
Query: 1 FLNSGGSAAFLLGEGGEDRLGTNVNYLLEEYGMTVHKDSVARTTYHKYMHPKEAFISHGILNPEIVRMKDTASLSRRGXXXXXXXXXXXXXXXGRLDSSISSPSSVSRGKSKGAADDAGAVSANEGGGGLTFVYPYGATM 420
+LN GGS A LGEGGE + GTN+NYLLE++GMT+H DSV RTTY+KY+HPKE FIS+GILNPEI + K T + R L GAA + V ++GGG L+FV+PYGA+M
Sbjct: 15 YLNQGGSVAIFLGEGGEAKSGTNINYLLEQFGMTIHSDSVVRTTYYKYLHPKEVFISNGILNPEIAKKKHTMGAAGRKLGAFARKVAIGQQGLAGL---------------VGAAHEQ--VDTSDGGG-LSFVFPYGASM 136
BLAST of mRNA_H-paniculata_contig4250.10859.1 vs. uniprot
Match: A0A7S2WK73_9STRA (Hypothetical protein (Fragment) n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2WK73_9STRA) HSP 1 Score: 103 bits (258), Expect = 8.070e-25 Identity = 63/145 (43.45%), Postives = 83/145 (57.24%), Query Frame = 1
Query: 1 FLNSGGSAAFLLGEGGEDRLGTNVNYLLEEYGMTVHKDSVARTTYHKYMHPKEAFISHGILNPEIVRMKDTASLSRRGXXXXXXXXXXXXXXXGRLDSSISSPSSVSRGKSKGAADDAGAVSANEGGGGLTFVYPYGATMTVQSP 435
+L+ GGS FLLGEGGE++ GTN+N+LLEEYG++ + DSVART Y+KY+HPKE I +GILN +V S ++G P+ ++ K A AGA N GGL FVYPYG+T+ VQ P
Sbjct: 83 YLHDGGSILFLLGEGGEEKYGTNINFLLEEYGISFNNDSVARTVYYKYLHPKEVLIGNGILNRGVVTSSRHISGGKKGDLKGQDKRKK--------------PAILANKK----AVAAGATKEN---GGLDFVYPYGSTLNVQKP 206
BLAST of mRNA_H-paniculata_contig4250.10859.1 vs. uniprot
Match: A0A812XMP2_9DINO (IFT52 protein n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=631055 RepID=A0A812XMP2_9DINO) HSP 1 Score: 95.1 bits (235), Expect = 1.640e-21 Identity = 56/145 (38.62%), Postives = 78/145 (53.79%), Query Frame = 1
Query: 1 FLNSGGSAAFLLGEGGEDRLGTNVNYLLEEYGMTVHKDSVARTTYHKYMHPKEAFISHGILNPEIVRMKDTASLSRRGXXXXXXXXXXXXXXXGRLDSSISSPSSVSRGKSKGAADDAGAVSANEGGGGLTFVYPYGATMTVQSP 435
+L GGS FL+GEGGE + TNVNYLLEE+GM+++ D+V RT YHKY HPKE I+HG + ++VR + + +L +I+ +DA V+ + GGL FV+PYGAT+ Q P
Sbjct: 70 YLADGGSILFLVGEGGEGKSNTNVNYLLEEFGMSINNDAVVRTVYHKYHHPKECLITHGTICRDLVRAANGEKKKEKENND-------------KLALNITK-------------EDAETVTLAKDDGGLEFVFPYGATLNAQKP 188
BLAST of mRNA_H-paniculata_contig4250.10859.1 vs. uniprot
Match: A0A812JBT7_SYMPI (IFT52 protein n=1 Tax=Symbiodinium pilosum TaxID=2952 RepID=A0A812JBT7_SYMPI) HSP 1 Score: 95.9 bits (237), Expect = 5.480e-21 Identity = 57/145 (39.31%), Postives = 78/145 (53.79%), Query Frame = 1
Query: 1 FLNSGGSAAFLLGEGGEDRLGTNVNYLLEEYGMTVHKDSVARTTYHKYMHPKEAFISHGILNPEIVRMKDTASLSRRGXXXXXXXXXXXXXXXGRLDSSISSPSSVSRGKSKGAADDAGAVSANEGGGGLTFVYPYGATMTVQSP 435
+L GGS FL+GEGGE + TNVNYLLEE+GM+V+ D+V RT YHKY HPKE I+HG + ++VR + + +L +I+ +DA V+ + GGL FV+PYGAT+ Q P
Sbjct: 70 YLADGGSVLFLVGEGGEGKSNTNVNYLLEEFGMSVNNDAVVRTVYHKYHHPKECLITHGTICRDLVRAANGEKKKEKENND-------------KLALNITK-------------EDAETVTLAKDDGGLEFVFPYGATLNAQKP 188
BLAST of mRNA_H-paniculata_contig4250.10859.1 vs. uniprot
Match: A0A1Y2BQ39_9FUNG (Uncharacterized protein n=1 Tax=Rhizoclosmatium globosum TaxID=329046 RepID=A0A1Y2BQ39_9FUNG) HSP 1 Score: 96.3 bits (238), Expect = 6.370e-21 Identity = 62/145 (42.76%), Postives = 73/145 (50.34%), Query Frame = 1
Query: 1 FLNSGGSAAFLLGEGGEDRLGTNVNYLLEEYGMTVHKDSVARTTYHKYMHPKEAFISHGILNPEIVRMKDTASLSRRGXXXXXXXXXXXXXXXGRLDSSISSPSSVSRGKSKGAADDAGAVSANEGGGGLTFVYPYGATMTVQSP 435
FL GGS +L GEGGE TN NYLLEEYGM V+ D V RT ++KY HPKE F+S+GILN EI R + P + S K G G ++ GLTFVYPYGAT+TVQ P
Sbjct: 30 FLERGGSILYLSGEGGESEYNTNFNYLLEEYGMVVNPDCVTRTVFYKYFHPKEVFVSNGILNREINRAAGKKA-----------------------------PLTASA-KQGGIVGGGGDHHDHKNHTGLTFVYPYGATLTVQKP 144
BLAST of mRNA_H-paniculata_contig4250.10859.1 vs. uniprot
Match: A0A812SV39_9DINO (Ift52 protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812SV39_9DINO) HSP 1 Score: 96.7 bits (239), Expect = 1.130e-20 Identity = 57/145 (39.31%), Postives = 78/145 (53.79%), Query Frame = 1
Query: 1 FLNSGGSAAFLLGEGGEDRLGTNVNYLLEEYGMTVHKDSVARTTYHKYMHPKEAFISHGILNPEIVRMKDTASLSRRGXXXXXXXXXXXXXXXGRLDSSISSPSSVSRGKSKGAADDAGAVSANEGGGGLTFVYPYGATMTVQSP 435
+L GGS FL+GEGGE + TNVNYLLEE+GM+V+ D+V RT YHKY HPKE I+HG + ++VR + + +L +I+ +DA V+ + GGL FV+PYGAT+ Q P
Sbjct: 87 YLADGGSVLFLVGEGGEGKSNTNVNYLLEEFGMSVNNDAVVRTVYHKYHHPKECLITHGTICRDLVRSANGEKKKEKENND-------------KLALNITK-------------EDAETVTLTKDDGGLEFVFPYGATLNAQKP 205
BLAST of mRNA_H-paniculata_contig4250.10859.1 vs. uniprot
Match: A0A507EUJ0_9FUNG (Uncharacterized protein n=1 Tax=Chytriomyces confervae TaxID=246404 RepID=A0A507EUJ0_9FUNG) HSP 1 Score: 95.1 bits (235), Expect = 5.320e-20 Identity = 59/145 (40.69%), Postives = 73/145 (50.34%), Query Frame = 1
Query: 1 FLNSGGSAAFLLGEGGEDRLGTNVNYLLEEYGMTVHKDSVARTTYHKYMHPKEAFISHGILNPEIVRMKDTASLSRRGXXXXXXXXXXXXXXXGRLDSSISSPSSVSRGKSKGAADDAGAVSANEGGGGLTFVYPYGATMTVQSP 435
FL GGS +L GEGGE TN NYLLEEYGM V+ DSV RT ++KY HPKE F+S+GILN EI R A+ + G+ D ++ GL+FVYPYGA++TVQ P
Sbjct: 203 FLEKGGSILYLAGEGGESEYNTNFNYLLEEYGMMVNSDSVTRTVFYKYFHPKEVFVSNGILNREINR----AAGKKANVPASNRPGGMIGGDLGQHD--------------------------HKNHTGLSFVYPYGASLTVQKP 317
BLAST of mRNA_H-paniculata_contig4250.10859.1 vs. uniprot
Match: F0Y809_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y809_AURAN) HSP 1 Score: 94.7 bits (234), Expect = 5.770e-20 Identity = 60/145 (41.38%), Postives = 76/145 (52.41%), Query Frame = 1
Query: 1 FLNSGGSAAFLLGEGGEDRLGTNVNYLLEEYGMTVHKDSVARTTYHKYMHPKEAFISHGILNPEIVRMKDTASLSRRGXXXXXXXXXXXXXXXGRLDSSISSPSSVSRGKSKGAADDAGAVSANEGGGGLTFVYPYGATMTVQSP 435
F+ +GGS L EGGE +LG NVN LLE YGM+ DSV RT Y+KY+HPKE F+SHG+L PE+ K + + R RG A + G A +GGG L+FVYP GAT++VQ P
Sbjct: 72 FVANGGSLLVLSSEGGEPKLGCNVNELLEGYGMSAQPDSVLRTVYYKYLHPKEVFVSHGVLQPELATHKHLSHGNARKHR---------------------------RGGVAAAKEPEGGHDAAQGGG-LSFVYPRGATLSVQRP 188 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4250.10859.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig4250.10859.1 >prot_H-paniculata_contig4250.10859.1 ID=prot_H-paniculata_contig4250.10859.1|Name=mRNA_H-paniculata_contig4250.10859.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=145bp FLNSGGSAAFLLGEGGEDRLGTNVNYLLEEYGMTVHKDSVARTTYHKYMHback to top mRNA from alignment at H-paniculata_contig4250:2499..3925+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig4250.10859.1 ID=mRNA_H-paniculata_contig4250.10859.1|Name=mRNA_H-paniculata_contig4250.10859.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1427bp|location=Sequence derived from alignment at H-paniculata_contig4250:2499..3925+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig4250:2499..3925+ >mRNA_H-paniculata_contig4250.10859.1 ID=mRNA_H-paniculata_contig4250.10859.1|Name=mRNA_H-paniculata_contig4250.10859.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=870bp|location=Sequence derived from alignment at H-paniculata_contig4250:2499..3925+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |