mRNA_H-paniculata_contig425.10858.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig425.10858.1
Unique NamemRNA_H-paniculata_contig425.10858.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig425.10858.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig425contigH-paniculata_contig425:35045..38431 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size2037
Cds size1245
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig425.10858.1prot_H-paniculata_contig425.10858.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig425 35503..38097 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930291.5396593-UTR-H-paniculata_contig425:35044..355021622930291.5396593-UTR-H-paniculata_contig425:35044..35502Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig425 35045..35502 +
1691481227.9886732-UTR-H-paniculata_contig425:35044..355021691481227.9886732-UTR-H-paniculata_contig425:35044..35502Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig425 35045..35502 +
1622930291.6016195-UTR-H-paniculata_contig425:38097..384311622930291.6016195-UTR-H-paniculata_contig425:38097..38431Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig425 38098..38431 +
1691481228.0178785-UTR-H-paniculata_contig425:38097..384311691481228.0178785-UTR-H-paniculata_contig425:38097..38431Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig425 38098..38431 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930291.5630388-CDS-H-paniculata_contig425:35502..358701622930291.5630388-CDS-H-paniculata_contig425:35502..35870Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig425 35503..35870 +
1691481227.998878-CDS-H-paniculata_contig425:35502..358701691481227.998878-CDS-H-paniculata_contig425:35502..35870Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig425 35503..35870 +
1622930291.5834296-CDS-H-paniculata_contig425:37220..380971622930291.5834296-CDS-H-paniculata_contig425:37220..38097Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig425 37221..38097 +
1691481228.0083902-CDS-H-paniculata_contig425:37220..380971691481228.0083902-CDS-H-paniculata_contig425:37220..38097Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig425 37221..38097 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig425.10858.1

>prot_H-paniculata_contig425.10858.1 ID=prot_H-paniculata_contig425.10858.1|Name=mRNA_H-paniculata_contig425.10858.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=415bp
MFCCSALRICLMCLFFVSWSASSLAKYILHFGCFGRPKDVTLFFLFFNEV
PPIPLSEIDFQSVSRRAHLGHCVLAVLADSCSSLEYERMRVAYNSIIDSK
MPAAPPLEEWQGMNDICDAIFCRSLHSHVGKIKSHDESNADSTTACAMRE
TTSAELPCGPSGGAHEGVTTGKNSITASEKRVVPIDCGSPDSECFNSVSA
ISRGEPGVLLKSTEGVGNINVANDPALSGVWGAGTHNIYFPSIATSVESA
GGGSQVRGNAQVETGAARDGGSKTVYDSTEVLIASAGTFGGSTQDSDKVD
AAGISNSGHFGLLGGATGGKETNIDVVERTDAAIKPGIELLGAALDVGVL
CGEGGGGASGLTDKEANSDSGSFIDAMDVLIDNGYLDSFEAADEGGGRGD
GSLSPLPFKQYKVE*
back to top

mRNA from alignment at H-paniculata_contig425:35045..38431+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig425.10858.1 ID=mRNA_H-paniculata_contig425.10858.1|Name=mRNA_H-paniculata_contig425.10858.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3387bp|location=Sequence derived from alignment at H-paniculata_contig425:35045..38431+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGCGAAAGAGACTCAGATAGGATGAGCAGTAGCTTCGTTTGTGTGGAAGT
CGTCGAAATGGTTAGAGCTACGGGGCCATGCGCTGCTGCAAGACGCGAGA
CGCGCCCCCGTTCGTGAATCTGGGACGCGAGGCTGTTCAAAACGGAATTA
TAGTGCTTCCATATGTTGACAAACATTTTCATTACAATACAGCTGCTCAC
CATGGAGACTCCCCCGTATAGTGTCGTGTCATAACATGTAAAGTCTCACT
AATGGAATTTGACCAAAGAGGAGCCTGTTGCCCGTTGGGTGTGGATTCGT
TGAGTACGCCTATCTCACTTATGTGGGGTGCAGTTTACACGTGGGCCACT
GAATTCCGGACGATGCCGGCGTTGTCCCTAGAGCGCGTCTTTGTGTTATC
CTACGTGTGCTGATTGCTTTATTGGGTCATGTTCCCTATTATTGTGCTAT
GATATGCTATGTTTTGTTGTTCCGCTCTACGTATATGCCTCATGTGTTTA
TTTTTTGTTTCGTGGTCTGCTTCCTCATTGGCTAAATATATCCTGCATTT
CGGCTGTTTCGGGAGACCAAAGGATGTCACTTTGTTTTTTTTGTTTTTTA
ATGAAGTCCCACCCATCCCACTATCCGAAATTGATTTTCAATCTGTCTCT
CGCAGGGCGCACCTGGGGCACTGCGTGCTAGCTGTGCTAGCCGACAGCTG
TTCTTCTCTGGAATATGAGCGCATGAGGGTTGCCTACAACTCCATCATCG
ACTCCAAAATGCCGGCCGCGCCCCCCCTCGAAGAGTGGCAAGGGATGAAC
GATATTTGCGATGCCATATTTTGCAGGTGTGCACAAGTATGATTCCCGCG
TGCAACTGACCCTTGGGTCGTCTTTTTCAAACTGCATTTCGATGTATGAT
GACCGATGGCTCTAGATCCGTATTGTTCCTTACAGTGTTTGTGATGGAAT
CCTGGGGCTCGTCGTCTCGGAACAGCTTTTCAAGTCTATTAAAAAGATCT
TGGCAAAACCCTGCTCGCTGCGCTCGCAGCGGGCAGGGTTCGATTAGCTT
CACGAGCCTCTATGGCGAGCGCAGCGAATCCATGGGTCTAGCACAAGCAC
GAATTGCACGAAATGTAGCCATTAATACTTCACTGCTACAGTGTATGAGT
AAGAAATGACGCTGCAAAATCTTTATGTGTTGAGTCGTGCTCCGACTGAT
TGTCACGGTTGGAGAGGGACAATATTTTGCGAGTGAGCACCTACGGTTCT
TGACCTTGATGTGCGATACGCATTTTGCGTTGTTTTTGTGGCTTGCGATG
CAATGTAATGTGTACATGGAGCCCTCTGCTTGCTTTCATGAAAAGTCGTT
GTCAACCCATAAGCGGGGTGGGTCCCTTCAGTGAAAAAGGAGATCTCCCT
GTTGTTGGACGAGGCCACTCGGTTTATAGATCGGAACTTGAGGTTTTCTT
CATGGTGCTGCGTATGATGCGAGGATTGGTTTTGCTTCTCTCCAAAAGAA
CGTATGGCTGTCATCCGCAAAAGCTTTTGCTGTCAAATCCACCAATAGTC
TACCCGCGGCTGCTGCTCTCCCTTGAGGTGGCGGGAGTGTACTACGAGAG
CCCTCTGCCTGGCTTCACATGTGTGTGCTTTTGCTTCGCGTATGGCATGC
TTCCGGGGGGATTCCAATGACCGAGGGGGGGGTTCAAACATCGTCTGCGG
TATTTAGAGGATGGAGGGAGTATCTTGTTTAGTATGCGTACTGGCACCAC
GTGTTGGTGACGGCGGAGCCTGCACCTTTCGATAAGGAGATACACATTTT
CCTTTTTTTTTCCCGGCACTCGATTCGTTTCATTGTGAAAAGATACCCAA
ATGCACCTCAACACCGTCTCAATAAGGTTGCCAGGCTTATGGGCTATAGG
TTCGGTATTTTGCAATAAGCCACCCTTGCTGCCGTTTACGTTCTTTCTTT
CCGCCGCTCACGTCTTCCGGAAGACGCGTGGTTGGTCGTCCAACAACTAC
AGTGTGCACAACATGAGTGCCACCCCCCCGGCCCGCACCCAATCCCAAGC
AGCATCAGAAACTGCGGCGAAAGCGCAACAACATCAACTGAATAAGGATG
CCAATAATGTTTCGCTCCCGTCCATACGTGCTCCCTCCCTTTCCCCTTTC
CCCTCCTCGATCGTCTCTTGCATAAGATCCCTCCATTCCCACGTCGGCAA
GATCAAGTCGCACGACGAGTCCAATGCAGACAGTACGACCGCTTGCGCCA
TGCGCGAAACCACGTCTGCCGAGCTGCCTTGCGGACCTTCCGGTGGAGCT
CACGAAGGCGTTACGACTGGCAAGAACAGTATCACCGCTTCAGAAAAACG
GGTAGTGCCGATTGACTGCGGCAGTCCCGACTCGGAGTGTTTCAACTCTG
TTAGCGCTATCAGTCGAGGGGAACCCGGGGTGTTGCTGAAGAGTACCGAA
GGTGTCGGCAACATAAACGTGGCGAATGACCCTGCATTGAGCGGCGTGTG
GGGGGCAGGAACACATAATATCTATTTTCCTTCTATCGCTACCAGCGTCG
AATCGGCCGGCGGTGGTTCTCAAGTTCGCGGCAATGCTCAGGTCGAAACC
GGTGCTGCTCGAGATGGAGGTAGTAAGACAGTCTACGATAGCACCGAGGT
TTTAATCGCAAGTGCCGGTACGTTTGGTGGTAGCACTCAGGATAGCGACA
AGGTTGACGCCGCTGGTATAAGTAATTCCGGACATTTCGGACTCCTTGGC
GGCGCGACTGGGGGCAAAGAGACAAACATCGACGTCGTTGAACGAACCGA
CGCTGCGATTAAGCCCGGCATAGAGTTGTTGGGCGCTGCTCTAGACGTTG
GTGTTCTTTGTGGAGAGGGCGGGGGCGGGGCCTCTGGATTAACGGATAAA
GAAGCGAACTCTGACAGTGGTAGTTTTATAGACGCGATGGATGTTTTGAT
CGACAACGGATATCTAGACAGTTTCGAGGCAGCGGATGAAGGTGGGGGGA
GAGGCGACGGCAGTTTATCCCCTCTGCCTTTTAAACAATATAAAGTAGAA
TGAACATACATGATTTGTGCCCGCATTTTCGAGTAGAAATTTCGTCGGCG
ATGTGGTTGGTTATGTAAAAGGCGATAGTATGGTAGCGGGAAGAGTCGGA
TTGGGAGAGGGTTGTGTGGGGGTTACCACGTTTATACTATTTTACCCGTA
GTGCTCTGCACGTTGCTTCGTTTGTTTCGTTCTTTATCAATCTTTTTAAC
CCCCGTAAGGCCAAGGCAAAAACCTTTATCCGATACTTCCATACCGAAGT
ATTTCTATATTTCCTTTAATAGAACAGAGTTATTTATTCCTCTGCGGGGT
AGGCGCCACTCCGGTTCGGCCGAACCAACTAAGCAGT
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig425:35045..38431+

>mRNA_H-paniculata_contig425.10858.1 ID=mRNA_H-paniculata_contig425.10858.1|Name=mRNA_H-paniculata_contig425.10858.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2490bp|location=Sequence derived from alignment at H-paniculata_contig425:35045..38431+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTTTGTTGTTCCGCTCTACGTATATGCCTCATGTGTTTATTTTTTGT
TTCGTGGTCTGCTTCCTCATTGGCTAAATATATCCTGCATTTCGGCTGTT
TCGGGAGACCAAAGGATGTCACTTTGTTTTTTTTGTTTTTTAATGAAGTC
CCACCCATCCCACTATCCGAAATTGATTTTCAATCTGTCTCTCGCAGGGC
GCACCTGGGGCACTGCGTGCTAGCTGTGCTAGCCGACAGCTGTTCTTCTC
TGGAATATGAGCGCATGAGGGTTGCCTACAACTCCATCATCGACTCCAAA
ATGCCGGCCGCGCCCCCCCTCGAAGAGTGGCAAGGGATGAACGATATTTG
CGATGCCATATTTTGCAGATGTTTTGTTGTTCCGCTCTACGTATATGCCT
CATGTGTTTATTTTTTGTTTCGTGGTCTGCTTCCTCATTGGCTAAATATA
TCCTGCATTTCGGCTGTTTCGGGAGACCAAAGGATGTCACTTTGTTTTTT
TTGTTTTTTAATGAAGTCCCACCCATCCCACTATCCGAAATTGATTTTCA
ATCTGTCTCTCGCAGGGCGCACCTGGGGCACTGCGTGCTAGCTGTGCTAG
CCGACAGCTGTTCTTCTCTGGAATATGAGCGCATGAGGGTTGCCTACAAC
TCCATCATCGACTCCAAAATGCCGGCCGCGCCCCCCCTCGAAGAGTGGCA
AGGGATGAACGATATTTGCGATGCCATATTTTGCAGATCCCTCCATTCCC
ACGTCGGCAAGATCAAGTCGCACGACGAGTCCAATGCAGACAGTACGACC
GCTTGCGCCATGCGCGAAACCACGTCTGCCGAGCTGCCTTGCGGACCTTC
CGGTGGAGCTCACGAAGGCGTTACGACTGGCAAGAACAGTATCACCGCTT
CAGAAAAACGGGTAGTGCCGATTGACTGCGGCAGTCCCGACTCGGAGTGT
TTCAACTCTGTTAGCGCTATCAGTCGAGGGGAACCCGGGGTGTTGCTGAA
GAGTACCGAAGGTGTCGGCAACATAAACGTGGCGAATGACCCTGCATTGA
GCGGCGTGTGGGGGGCAGGAACACATAATATCTATTTTCCTTCTATCGCT
ACCAGCGTCGAATCGGCCGGCGGTGGTTCTCAAGTTCGCGGCAATGCTCA
GGTCGAAACCGGTGCTGCTCGAGATGGAGGTAGTAAGACAGTCTACGATA
GCACCGAGGTTTTAATCGCAAGTGCCGGTACGTTTGGTGGTAGCACTCAG
GATAGCGACAAGGTTGACGCCGCTGGTATAAGTAATTCCGGACATTTCGG
ACTCCTTGGCGGCGCGACTGGGGGCAAAGAGACAAACATCGACGTCGTTG
AACGAACCGACGCTGCGATTAAGCCCGGCATAGAGTTGTTGGGCGCTGCT
CTAGACGTTGGTGTTCTTTGTGGAGAGGGCGGGGGCGGGGCCTCTGGATT
AACGGATAAAGAAGCGAACTCTGACAGTGGTAGTTTTATAGACGCGATGG
ATGTTTTGATCGACAACGGATATCTAGACAGTTTCGAGGCAGCGGATGAA
GGTGGGGGGAGAGGCGACGGCAGTTTATCCCCTCTGCCTTTTAAACAATA
TAAAGTAGAATGAATCCCTCCATTCCCACGTCGGCAAGATCAAGTCGCAC
GACGAGTCCAATGCAGACAGTACGACCGCTTGCGCCATGCGCGAAACCAC
GTCTGCCGAGCTGCCTTGCGGACCTTCCGGTGGAGCTCACGAAGGCGTTA
CGACTGGCAAGAACAGTATCACCGCTTCAGAAAAACGGGTAGTGCCGATT
GACTGCGGCAGTCCCGACTCGGAGTGTTTCAACTCTGTTAGCGCTATCAG
TCGAGGGGAACCCGGGGTGTTGCTGAAGAGTACCGAAGGTGTCGGCAACA
TAAACGTGGCGAATGACCCTGCATTGAGCGGCGTGTGGGGGGCAGGAACA
CATAATATCTATTTTCCTTCTATCGCTACCAGCGTCGAATCGGCCGGCGG
TGGTTCTCAAGTTCGCGGCAATGCTCAGGTCGAAACCGGTGCTGCTCGAG
ATGGAGGTAGTAAGACAGTCTACGATAGCACCGAGGTTTTAATCGCAAGT
GCCGGTACGTTTGGTGGTAGCACTCAGGATAGCGACAAGGTTGACGCCGC
TGGTATAAGTAATTCCGGACATTTCGGACTCCTTGGCGGCGCGACTGGGG
GCAAAGAGACAAACATCGACGTCGTTGAACGAACCGACGCTGCGATTAAG
CCCGGCATAGAGTTGTTGGGCGCTGCTCTAGACGTTGGTGTTCTTTGTGG
AGAGGGCGGGGGCGGGGCCTCTGGATTAACGGATAAAGAAGCGAACTCTG
ACAGTGGTAGTTTTATAGACGCGATGGATGTTTTGATCGACAACGGATAT
CTAGACAGTTTCGAGGCAGCGGATGAAGGTGGGGGGAGAGGCGACGGCAG
TTTATCCCCTCTGCCTTTTAAACAATATAAAGTAGAATGA
back to top