mRNA_H-paniculata_contig42393.10839.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig42393.10839.1
Unique NamemRNA_H-paniculata_contig42393.10839.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig42393.10839.1 vs. uniprot
Match: D8LUA4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LUA4_ECTSI)

HSP 1 Score: 105 bits (262), Expect = 9.090e-25
Identity = 50/69 (72.46%), Postives = 56/69 (81.16%), Query Frame = 1 
Query:   22 PIAGLRHLAGLRGLPSLVELTLDDVHFGTCPVVRSEGYRDFVMCFLRQVRRLDGLEVAEADREEAAVKY 228
            PI G+RHL+GLRGLPSL+ELTLDD+HFGTCPVV   GYR FV+  L QVRRLDGLEV EADR +   KY
Sbjct:  118 PIVGVRHLSGLRGLPSLMELTLDDIHFGTCPVVAKAGYRSFVLRCLSQVRRLDGLEVMEADRADVEHKY 186
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BLAST of mRNA_H-paniculata_contig42393.10839.1 vs. uniprot
Match: A0A7S1G818_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G818_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 9.810e-10
Identity = 29/50 (58.00%), Postives = 37/50 (74.00%), Query Frame = 1 
Query:   70 LVELTLDDVHFGTCPVVRSEGYRDFVMCFLRQVRRLDGLEVAEADREEAA 219
            L  L+ DDVH+G+CPV+ ++GYRDFV+C LRQ+  LDG E  EAD   AA
Sbjct:  231 LRSLSFDDVHYGSCPVINADGYRDFVLCTLRQLTELDG-EPVEADDRRAA 279
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig42393.10839.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LUA4_ECTSI9.090e-2572.46Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S1G818_9STRA9.810e-1058.00Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig42393contigH-paniculata_contig42393:293..871 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score107.5
Seed ortholog evalue2.9e-21
Seed eggNOG ortholog2880.D8LUA4
Hectar predicted targeting categoryother localisation
EggNOG free text desc.axoneme assembly
EggNOG OGsCOG4886@1,KOG0531@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size228
Cds size228
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930288.2166724-CDS-H-paniculata_contig42393:292..4631622930288.2166724-CDS-H-paniculata_contig42393:292..463Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig42393 293..463 +
1691481226.4660814-CDS-H-paniculata_contig42393:292..4631691481226.4660814-CDS-H-paniculata_contig42393:292..463Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig42393 293..463 +
1622930288.235752-CDS-H-paniculata_contig42393:814..8711622930288.235752-CDS-H-paniculata_contig42393:814..871Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig42393 815..871 +
1691481226.4775229-CDS-H-paniculata_contig42393:814..8711691481226.4775229-CDS-H-paniculata_contig42393:814..871Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig42393 815..871 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig42393.10839.1prot_H-paniculata_contig42393.10839.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig42393 293..871 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig42393.10839.1

>prot_H-paniculata_contig42393.10839.1 ID=prot_H-paniculata_contig42393.10839.1|Name=mRNA_H-paniculata_contig42393.10839.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=76bp
NLGLAGNPIAGLRHLAGLRGLPSLVELTLDDVHFGTCPVVRSEGYRDFVM
CFLRQVRRLDGLEVAEADREEAAVKY
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mRNA from alignment at H-paniculata_contig42393:293..871+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig42393.10839.1 ID=mRNA_H-paniculata_contig42393.10839.1|Name=mRNA_H-paniculata_contig42393.10839.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=579bp|location=Sequence derived from alignment at H-paniculata_contig42393:293..871+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AACTTGGGTCTCGCGGGAAATCCCATCGCCGGACTGCGACACCTCGCTGG
ATTGCGCGGCTTGCCTTCTTTGGTGGAGCTAACTCTTGACGATGTACACT
TCGGCACCTGTCCGGTGGTGCGTTCCGAGGGTTACCGGGACTTCGTCATG
TGCTTCCTGCGGCAGGTGCGCGTTGGGTATTGTATAACGCAGTCAAGGAT
CACAATCCAATGCGCGTACTGGGTTCGTATCTACATTGCGACAAGCACGC
GAAGTCTGCACGTCATTGCACTGTCCATCCTCAACATTTGCAGTACTTTT
TGTTTCTGTCGACTCTAACGAACGGGGGCAATGGGGGGGGGGGGGGCTTT
TGTCGCACTTACCTGGACACTCACCGTCACGATGATGCACCGTGTTTTTT
GTGTGTGAATACCCTACGTTTAACGGTGTGCATTATCTCTTCCGTGTTGG
GCCACAATCTCCTTTGCGTTTTTTTTGTCTCTGCGCGTTGCGTCGACCAT
GTACACGCGCGTATAGGTCCAGCGGCTGGATGGGTTGGAAGTTGCCGAGG
CCGATCGCGAGGAGGCAGCGGTCAAGTAC
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Coding sequence (CDS) from alignment at H-paniculata_contig42393:293..871+

>mRNA_H-paniculata_contig42393.10839.1 ID=mRNA_H-paniculata_contig42393.10839.1|Name=mRNA_H-paniculata_contig42393.10839.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=456bp|location=Sequence derived from alignment at H-paniculata_contig42393:293..871+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AACTTGGGTCTCGCGGGAAATCCCATCGCCGGACTGCGACACCTCGCTGG
ATTGCGCGGCTTGCCTTCTTTGGTGGAGCTAACTCTTGACGATGTACACT
TCGGCACCTGTCCGGTGGTGCGTTCCGAGGGTTACCGGGACTTCGTCATG
TGCTTCCTGCGGCAGGTGCGCAACTTGGGTCTCGCGGGAAATCCCATCGC
CGGACTGCGACACCTCGCTGGATTGCGCGGCTTGCCTTCTTTGGTGGAGC
TAACTCTTGACGATGTACACTTCGGCACCTGTCCGGTGGTGCGTTCCGAG
GGTTACCGGGACTTCGTCATGTGCTTCCTGCGGCAGGTGCGCCGGCTGGA
TGGGTTGGAAGTTGCCGAGGCCGATCGCGAGGAGGCAGCGGTCAAGTACC
GGCTGGATGGGTTGGAAGTTGCCGAGGCCGATCGCGAGGAGGCAGCGGTC
AAGTAC
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