mRNA_H-paniculata_contig4239.10836.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4239.10836.1
Unique NamemRNA_H-paniculata_contig4239.10836.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4239.10836.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4239contigH-paniculata_contig4239:1747..3526 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size538
Cds size465
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4239.10836.1prot_H-paniculata_contig4239.10836.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4239 1820..3526 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930287.9521003-UTR-H-paniculata_contig4239:1746..18191622930287.9521003-UTR-H-paniculata_contig4239:1746..1819Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4239 1747..1819 -
1691481226.381893-UTR-H-paniculata_contig4239:1746..18191691481226.381893-UTR-H-paniculata_contig4239:1746..1819Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4239 1747..1819 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930287.9692903-CDS-H-paniculata_contig4239:1819..19841622930287.9692903-CDS-H-paniculata_contig4239:1819..1984Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4239 1820..1984 -
1691481226.3957114-CDS-H-paniculata_contig4239:1819..19841691481226.3957114-CDS-H-paniculata_contig4239:1819..1984Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4239 1820..1984 -
1622930287.9889557-CDS-H-paniculata_contig4239:3226..35261622930287.9889557-CDS-H-paniculata_contig4239:3226..3526Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4239 3227..3526 -
1691481226.4055054-CDS-H-paniculata_contig4239:3226..35261691481226.4055054-CDS-H-paniculata_contig4239:3226..3526Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4239 3227..3526 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4239.10836.1

>prot_H-paniculata_contig4239.10836.1 ID=prot_H-paniculata_contig4239.10836.1|Name=mRNA_H-paniculata_contig4239.10836.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=155bp
AAAAAAAAAVAGKSPSGARGFVEGPSAKRLRTEGTVSGDRINGAGEAAGG
AVGDAVGAAGAGAVAGTTHVDGVSTGNGGATVPQDEEAASAARRQVWYRE
VQANDAHLEAVKQEAERVHAARMRELMNWIVDEEAGKHSGMGVDGGPGLA
SWNR*
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mRNA from alignment at H-paniculata_contig4239:1747..3526-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4239.10836.1 ID=mRNA_H-paniculata_contig4239.10836.1|Name=mRNA_H-paniculata_contig4239.10836.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1780bp|location=Sequence derived from alignment at H-paniculata_contig4239:1747..3526- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCAGCGGCAGCGGCAGCGGCAGCGGCGGTGGCGGGGAAGAGCCCTTCCGG
CGCTCGGGGTTTCGTCGAAGGTCCTTCCGCGAAGCGACTCCGAACAGAGG
GTACGGTCTCCGGAGACCGAATAAACGGGGCCGGTGAAGCTGCTGGGGGA
GCGGTGGGAGACGCAGTCGGTGCTGCGGGTGCTGGTGCTGTTGCCGGAAC
GACGCATGTGGATGGGGTATCGACGGGCAACGGTGGGGCCACTGTTCCCC
AAGACGAGGAAGCTGCGAGTGCCGCGCGACGGCAGGTTTGGTATCGAGAG
GTGAGCGTTTTCGCGAGTGATGATATTTAGGCAGCCGTGGCGGTGGCGGT
GAAACAGCGGGAAAAGGCCATAGATTTATTGCGTTTGGCTAAAAATGTAT
ATATTTGCCTTTTATTTTCCATGTACGTGTGTGTGTGTCCTCTTGAAAGG
TCGCTGTTCTTAAATTTTTTACGAGAACTACTCTCGTTTTGCCACAGTTG
TAGTCCGAACGCTTGTTGCAATTCTAGAGAGTCACTGCCAGCAAACTTGT
TGTGCCGTGTCGCGACGGACCCTATCCCTTGCTGGTTATGTCATACATAC
AACCGTTGATGACCAATCTTTAGAGCTCTGCAGCGAATTACGTGAGGTTA
TTTTCTATTTTTTTTATTGAGGAGTGGACCCCCGCCACCTGACTCATGAA
GTTGTACACGACAAAGAAACGAGACAACACACACGAAGAACTTCCTTCAA
GACAAGTTTTGATGTAAGAAAAGAAGGCAAGATAGTATGTTTTTATCGCG
CCCACCTTTTGTCAGAATTGTGCTGTAAGGGGAGAACAAACGTGTATAAC
TTCCAGTGAGGGTGCAAAAATACAGAAGCAGTGAACAAAAAAATGACTCG
TGAGCGAAAGTTGGCATAATACGAGTACACTAGAGTGTAGCACTCGAAAG
GAGAGGAAGACAGGCCCCGACCTCTTGAGTGGTTCGTTTTTTTTTCTATT
AGTTATCCCGTGTGTGCGCTGCCTGTGCAACAATGATCCAACAAGGCTAC
AATCTAGAGCTACATGCTTACGCCCTGCAGCGAAACAGGTTCTGTAATGA
AGACAGGTAATTGTAAAACGCGTGTGACGTGCTGGAATATTTTAATGACC
TCAAGGCCGAAAATGATACCGCGGAGTCATCTTGCCGTGAATTAATGCTG
CGCGAGTCCGACGCCAGCTCTTATGGTATTGTTTCACAGATTGTTGTGAT
GCCACTACTACTAGACTATCGCTACGCCCATGCGCTGAAGTCATAATCCA
GGACATGATTTGTGCTCGACCGATGCACGATGTCCATCGATCAAGATTCC
TTTCTCAGAACTTATTCGAGGACAGATTTGTACAATTGTTCCGAAATGAC
GATTTTACCGTGTTCATCTGCATAGACTTTGATTTTTTCCAAAAGTAACT
TGAGTATAGAGTGGAAAACGTGTTCCCAAATGACACAGACCTTGTTAATA
CCGCATTAATTGGGATGTTTGGTTTTTGGTCTCCCATGTCAGGTGCAAGC
GAACGATGCCCATCTCGAGGCCGTGAAGCAGGAGGCGGAACGGGTGCACG
CGGCACGAATGCGGGAGTTGATGAATTGGATTGTGGATGAAGAAGCGGGG
AAACACTCTGGCATGGGAGTGGATGGGGGCCCCGGTCTGGCTTCGTGGAA
TCGTTAAATAGGACTTTTTACAATAGAGAACAGGATAGGAAGAGAAGAGG
TTGGCATTTGGCCTCTCTTCTTTAGCTCCT
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Coding sequence (CDS) from alignment at H-paniculata_contig4239:1747..3526-

>mRNA_H-paniculata_contig4239.10836.1 ID=mRNA_H-paniculata_contig4239.10836.1|Name=mRNA_H-paniculata_contig4239.10836.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=930bp|location=Sequence derived from alignment at H-paniculata_contig4239:1747..3526- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCAGCGGCAGCGGCAGCGGCAGCGGCGGTGGCGGGGAAGAGCCCTTCCGG
CGCTCGGGGTTTCGTCGAAGGTCCTTCCGCGAAGCGACTCCGAACAGAGG
GTACGGTCTCCGGAGACCGAATAAACGGGGCCGGTGAAGCTGCTGGGGGA
GCGGTGGGAGACGCAGTCGGTGCTGCGGGTGCTGGTGCTGTTGCCGGAAC
GACGCATGTGGATGGGGTATCGACGGGCAACGGTGGGGCCACTGTTCCCC
AAGACGAGGAAGCTGCGAGTGCCGCGCGACGGCAGGTTTGGTATCGAGAG
GCAGCGGCAGCGGCAGCGGCAGCGGCGGTGGCGGGGAAGAGCCCTTCCGG
CGCTCGGGGTTTCGTCGAAGGTCCTTCCGCGAAGCGACTCCGAACAGAGG
GTACGGTCTCCGGAGACCGAATAAACGGGGCCGGTGAAGCTGCTGGGGGA
GCGGTGGGAGACGCAGTCGGTGCTGCGGGTGCTGGTGCTGTTGCCGGAAC
GACGCATGTGGATGGGGTATCGACGGGCAACGGTGGGGCCACTGTTCCCC
AAGACGAGGAAGCTGCGAGTGCCGCGCGACGGCAGGTTTGGTATCGAGAG
GTGCAAGCGAACGATGCCCATCTCGAGGCCGTGAAGCAGGAGGCGGAACG
GGTGCACGCGGCACGAATGCGGGAGTTGATGAATTGGATTGTGGATGAAG
AAGCGGGGAAACACTCTGGCATGGGAGTGGATGGGGGCCCCGGTCTGGCT
TCGTGGAATCGTTAAGTGCAAGCGAACGATGCCCATCTCGAGGCCGTGAA
GCAGGAGGCGGAACGGGTGCACGCGGCACGAATGCGGGAGTTGATGAATT
GGATTGTGGATGAAGAAGCGGGGAAACACTCTGGCATGGGAGTGGATGGG
GGCCCCGGTCTGGCTTCGTGGAATCGTTAA
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