mRNA_H-paniculata_contig4236.10829.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4236.10829.1
Unique NamemRNA_H-paniculata_contig4236.10829.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4236.10829.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4236contigH-paniculata_contig4236:660..2480 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size202
Cds size201
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930287.3849463-CDS-H-paniculata_contig4236:659..6861622930287.3849463-CDS-H-paniculata_contig4236:659..686Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4236 660..686 +
1691481226.1679964-CDS-H-paniculata_contig4236:659..6861691481226.1679964-CDS-H-paniculata_contig4236:659..686Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4236 660..686 +
1622930287.4097512-CDS-H-paniculata_contig4236:2305..24791622930287.4097512-CDS-H-paniculata_contig4236:2305..2479Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4236 2306..2479 +
1691481226.1797047-CDS-H-paniculata_contig4236:2305..24791691481226.1797047-CDS-H-paniculata_contig4236:2305..2479Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4236 2306..2479 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4236.10829.1prot_H-paniculata_contig4236.10829.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4236 660..2479 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4236.10829.1

>prot_H-paniculata_contig4236.10829.1 ID=prot_H-paniculata_contig4236.10829.1|Name=mRNA_H-paniculata_contig4236.10829.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=67bp
IVEPSRREQNLGFFRELREGIRAVKKACAAEDAASCQGGVNASGHSGVKR
RKQGSCPAMHHPAPFAR
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mRNA from alignment at H-paniculata_contig4236:660..2480+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4236.10829.1 ID=mRNA_H-paniculata_contig4236.10829.1|Name=mRNA_H-paniculata_contig4236.10829.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1821bp|location=Sequence derived from alignment at H-paniculata_contig4236:660..2480+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATTGTGGAGCCGAGTCGGCGGGAACAGGTATTACGCGATGTAGTTTATGT
ACTCGGTAAGAAAAGGTTGTCATCGGGCAGGAAACAATTACTTTTATTGA
GGACGCGTGTTTGAAAAAAACACCCGGTAAAAGTGACTGAGTTTTTTGCG
AGCAATAACCGGAGGTTGAAACCGTGCCCTTTTGGTCGGTGCACCGAAAA
TATGAGAAAGCCGGCAAACTCGGTAGCCGCTGTGTCGGATGAATTGGTCC
TTTGTTTCCATAGGGACAACATGAGGCAAGGGCCGCATTTGCTTAGACCA
TTTGGTGGCGCCACTGTTGAAACTGTCCAAACTCGAGAGTACATCATATA
CTTATTTATTATAGTTGTTATTGTTATTCTTCTTCTTCTTCTTCTTCTTC
TTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTATTCTTATT
CTCATTCTTATTCTTATTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGT
TACTATTATTATGATTGCTAATATTATTATTAGTATCATTATTAATATTA
TTAGTATTATTAGAATTGTTATAATTATCATTATAATTATTGTAATAATG
ATTATACTTGCCGTTTTGCCTTCCAACAAGGACAACGAGCAATTATCGCA
ATAAACCACAAGACAGCGTTAAGATTTCTCAGCTTCGATAACGTACCGGT
TGGTTTGTGTTTGATGGAGCATTTGTGGTGAGTAGTTGGTGGTGGAGGAT
AGATGATATGTACAAATGGTGCGGTGATGACGGGAAATTGGCATCGGGAG
AATGTTGTCCCCTTGTTGGTGGAAAAATGGACTTACACAACGAACCCCAG
CCCGAGCCTACCGTACCGTACGGTACCGTACCGTGTCAAAGAGTACCCAA
CACTACTCAACAACACAAGATCACTCATGTTATAGGTTTATTAAAAAGCA
GGGCAGTGTGCATTGGGAAGCTGTTTGCACTATTTTTATGAATCAGCAGT
CAATTCTTGGGGTTGATCACACAAATTTGAAGGTAAATCTATGCTACTAC
CGCTCTGTGAACTAAACGTGCTCTTGTGCAGTTTTGATTTATAGAAGAGA
GCCTGGTGGCTATTTATATTTGTCTGAACGACTGGTGATTGATGGTCCAA
GGCGGGGAAGAAAAACGTTTGCTGAATATAGAATACTGCGCTGCGCCGCC
CTCTGCCTGAACCAAGTAGTCACCGTCACTATTCGCTATTGATTTTAGGC
TAGATAATTGGTTCATCTTCACTTCTTTTACTATTTACATGAATCAGCAC
ATTTCAATGCTTACAGGCAATAATGATATACGAATGTTCATTTCTGTTGG
AACCACCACCTATACAAACTTTCCCCAGGGGGGGGCGTGAGTCTTGATCG
AGTAATAAACGAGTCAGCGTAGCTAAAGATCACTTACCTAATGTAGAAAT
ATTATTGATGATCGTAAAACAAAGTAGGGATATGCTCAGCATGTCAAAGT
TACTGACTGACTTATCCACAAATTAGATAAACTACGGGGGAGAGGGCATA
GGTGTCCGAAAATTCGAAAGCCCATTCTACTGGTACCTTTGGTTGATCCT
CTGTGCAACGTACGTACACGATCCTTCTTTTCATACTCGTGAGCAGAATC
TTGGATTTTTTCGAGAACTGAGGGAAGGGATAAGGGCGGTCAAGAAGGCG
TGTGCGGCGGAAGATGCTGCATCATGTCAGGGCGGCGTCAACGCGAGTGG
CCATAGCGGCGTGAAACGGAGAAAACAAGGGTCTTGCCCGGCGATGCACC
ACCCCGCGCCGTTTGCCCGCG
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Coding sequence (CDS) from alignment at H-paniculata_contig4236:660..2480+

>mRNA_H-paniculata_contig4236.10829.1 ID=mRNA_H-paniculata_contig4236.10829.1|Name=mRNA_H-paniculata_contig4236.10829.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=402bp|location=Sequence derived from alignment at H-paniculata_contig4236:660..2480+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATTGTGGAGCCGAGTCGGCGGGAACAGATTGTGGAGCCGAGTCGGCGGGA
ACAGAATCTTGGATTTTTTCGAGAACTGAGGGAAGGGATAAGGGCGGTCA
AGAAGGCGTGTGCGGCGGAAGATGCTGCATCATGTCAGGGCGGCGTCAAC
GCGAGTGGCCATAGCGGCGTGAAACGGAGAAAACAAGGGTCTTGCCCGGC
GATGCACCACCCCGCGCCGTTTGCCCGCAATCTTGGATTTTTTCGAGAAC
TGAGGGAAGGGATAAGGGCGGTCAAGAAGGCGTGTGCGGCGGAAGATGCT
GCATCATGTCAGGGCGGCGTCAACGCGAGTGGCCATAGCGGCGTGAAACG
GAGAAAACAAGGGTCTTGCCCGGCGATGCACCACCCCGCGCCGTTTGCCC
GC
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