mRNA_H-paniculata_contig42348.10827.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig42348.10827.1
Unique NamemRNA_H-paniculata_contig42348.10827.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig42348.10827.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig42348contigH-paniculata_contig42348:237..842 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size608
Cds size420
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930287.2400362-CDS-H-paniculata_contig42348:236..6561622930287.2400362-CDS-H-paniculata_contig42348:236..656Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig42348 237..656 +
1691481226.1193998-CDS-H-paniculata_contig42348:236..6561691481226.1193998-CDS-H-paniculata_contig42348:236..656Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig42348 237..656 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930287.2586489-UTR-H-paniculata_contig42348:656..8421622930287.2586489-UTR-H-paniculata_contig42348:656..842Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig42348 657..842 +
1691481226.1393373-UTR-H-paniculata_contig42348:656..8421691481226.1393373-UTR-H-paniculata_contig42348:656..842Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig42348 657..842 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig42348.10827.1prot_H-paniculata_contig42348.10827.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig42348 237..656 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig42348.10827.1

>prot_H-paniculata_contig42348.10827.1 ID=prot_H-paniculata_contig42348.10827.1|Name=mRNA_H-paniculata_contig42348.10827.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=140bp
ACQGRACREDSAGKFLPQGRRGELTQVVKRWVSGQAGAASARWSCVHHWT
AGQQSASWQPVPLFWPPRHGTSSWSTWRVQSHLLAPPQLHAVGVPRCLHV
WSRRHVWLPSTPCRRPPSSRGPFDGPARELTPQPAVLLP*
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mRNA from alignment at H-paniculata_contig42348:237..842+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig42348.10827.1 ID=mRNA_H-paniculata_contig42348.10827.1|Name=mRNA_H-paniculata_contig42348.10827.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=606bp|location=Sequence derived from alignment at H-paniculata_contig42348:237..842+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCATGTCAAGGAAGGGCGTGTCGCGAGGATTCGGCAGGAAAGTTTCTGCC
TCAGGGACGGAGAGGAGAGCTGACACAGGTCGTGAAACGGTGGGTGTCTG
GGCAAGCGGGGGCGGCGTCGGCGAGATGGTCCTGTGTCCATCATTGGACG
GCTGGCCAACAAAGCGCAAGCTGGCAGCCAGTGCCGCTGTTTTGGCCGCC
TCGGCACGGGACAAGTTCTTGGTCAACGTGGCGAGTGCAGTCTCATCTGC
TTGCGCCGCCGCAGCTTCACGCCGTCGGCGTGCCTCGATGTCTGCACGTT
TGGAGTCGTAGGCATGTTTGGCTTCCGTCAACGCCTTGTCGACGGCCGCC
ATCTTCTCGCGGGCCATTTGATGGGCCAGCGCGAGAGTTGACGCCTCAGC
CCGCAGTTCTTCTTCCCTGAGACGGGCGGCCTCCCGCTGGAATATGACGA
CAAACCGTCGCTGTTCAGTATTACTGAAATTGTCCCAACACAACTCCGGT
ATTCCATCAGGTCTACGGAAGTCTGCCGGCAGAGCAGCCATTTCACGTCG
GAGGGAAGCTTCCTCCGAGGTAATGGCAAGAACGGGAGGGACGGCCGACG
TAGTGG
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Coding sequence (CDS) from alignment at H-paniculata_contig42348:237..842+

>mRNA_H-paniculata_contig42348.10827.1 ID=mRNA_H-paniculata_contig42348.10827.1|Name=mRNA_H-paniculata_contig42348.10827.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=840bp|location=Sequence derived from alignment at H-paniculata_contig42348:237..842+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCATGTCAAGGAAGGGCGTGTCGCGAGGATTCGGCAGGAAAGTTTCTGCC
TCAGGGACGGAGAGGAGAGCTGACACAGGTCGTGAAACGGTGGGTGTCTG
GGCAAGCGGGGGCGGCGTCGGCGAGATGGTCCTGTGTCCATCATTGGACG
GCTGGCCAACAAAGCGCAAGCTGGCAGCCAGTGCCGCTGTTTTGGCCGCC
TCGGCACGGGACAAGTTCTTGGTCAACGTGGCGAGTGCAGTCTCATCTGC
TTGCGCCGCCGCAGCTTCACGCCGTCGGCGTGCCTCGATGTCTGCACGTT
TGGAGTCGTAGGCATGTTTGGCTTCCGTCAACGCCTTGTCGACGGCCGCC
ATCTTCTCGCGGGCCATTTGATGGGCCAGCGCGAGAGTTGACGCCTCAGC
CCGCAGTTCTTCTTCCCTGAGCATGTCAAGGAAGGGCGTGTCGCGAGGAT
TCGGCAGGAAAGTTTCTGCCTCAGGGACGGAGAGGAGAGCTGACACAGGT
CGTGAAACGGTGGGTGTCTGGGCAAGCGGGGGCGGCGTCGGCGAGATGGT
CCTGTGTCCATCATTGGACGGCTGGCCAACAAAGCGCAAGCTGGCAGCCA
GTGCCGCTGTTTTGGCCGCCTCGGCACGGGACAAGTTCTTGGTCAACGTG
GCGAGTGCAGTCTCATCTGCTTGCGCCGCCGCAGCTTCACGCCGTCGGCG
TGCCTCGATGTCTGCACGTTTGGAGTCGTAGGCATGTTTGGCTTCCGTCA
ACGCCTTGTCGACGGCCGCCATCTTCTCGCGGGCCATTTGATGGGCCAGC
GCGAGAGTTGACGCCTCAGCCCGCAGTTCTTCTTCCCTGA
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