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Homology
BLAST of mRNA_H-paniculata_contig4233.10825.1 vs. uniprot
Match: D7FMR0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMR0_ECTSI) HSP 1 Score: 150 bits (379), Expect = 3.740e-35 Identity = 89/141 (63.12%), Postives = 110/141 (78.01%), Query Frame = 3
Query: 582 PTAEDDGGSVNQLTVLSEAEEELKHSFDAHIKFLADAELAKKAEMEAFQRAGEAYLSNLQKSRAVTKEHALTLRKSLLEQRQRITRVRMEEVDTERERNRLQSQQREARLKAEKEALSAACVKEAAELGSAWAAVEAAAGF 1004
P A S QL +LS AE EL+ +FDAH+K+L++ E AK+AEM AFQRAGEA L N+++SR T + L L K+ L QRQRITR+RMEEVD ER RN+++S++REARLKAEKEALS AC +EAAELG+AWA VEAAAGF
Sbjct: 249 PAAAQGADSATQLELLSAAEGELRVAFDAHMKYLSEVEEAKRAEMAAFQRAGEAALQNMERSRKATTDDGLRLHKAFLNQRQRITRLRMEEVDQERARNQVESEKREARLKAEKEALSRACEQEAAELGNAWAVVEAAAGF 389
BLAST of mRNA_H-paniculata_contig4233.10825.1 vs. uniprot
Match: A0A6H5KY16_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY16_9PHAE) HSP 1 Score: 55.1 bits (131), Expect = 2.080e-5 Identity = 31/41 (75.61%), Postives = 37/41 (90.24%), Query Frame = 3
Query: 882 LQSQQREARLKAEKEALSAACVKEAAELGSAWAAVEAAAGF 1004
++S++REARLKAEKEALS AC +E AELG+AWA VEAAAGF
Sbjct: 7 VESEKREARLKAEKEALSRACEQEEAELGNAWAVVEAAAGF 47
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | hypothetical protein |
| Ec32 ortholog | Ec-23_001260.1 |
| Exons | 4 |
| Model size | 2500 |
| Cds size | 486 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig4233.10825.1 >prot_H-paniculata_contig4233.10825.1 ID=prot_H-paniculata_contig4233.10825.1|Name=mRNA_H-paniculata_contig4233.10825.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=162bp
MEAFQRAGEAYLSNLQKSRAVTKEHALTLRKSLLEQRQRITRVRMEEVDT ERERNRLQSQQREARLKAEKEALSAACVKEAAELGSAWAAVEAAAGFNTA SGESTTGGDGPSLAPRIAPATAAAAAAAAAAAAAAVAAVVVPDPAPPASA GTLEGNGTFGG* back to topmRNA from alignment at H-paniculata_contig4233:2..6209+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig4233.10825.1 ID=mRNA_H-paniculata_contig4233.10825.1|Name=mRNA_H-paniculata_contig4233.10825.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6208bp|location=Sequence derived from alignment at H-paniculata_contig4233:2..6209+ (Halopteris paniculata Hal_grac_a_UBK monoicous) CTCTGACTAGACTTCCAGTCATGCTCAATACACGAGCTACCCTACCCGTT
CGGGCGTAAGTCTGTGGAGGGTAATTCTAATTAGACCCCGTTTTCAATGG
CAACATGCCTACGGTAACCATCGTCACTCGCTTTTGCTGCAAATGTATTT
CTGGATTTGTAGGTTACAATACACGCGCAGCTAAACGTCATCTCGGGCGA
AGTTGGGTTAGGCAGTACACAAATAGGGCATGGACATGCAAACTCGTTTG
GGCATGTGGTTGTCGTTGTGAACTCATTTTGTGTGTCACTTTGCGTGTCA
CCTATCGGACTGATTCAAGCATGGGGAGTAGGTGGGAAAAGGTAACAAAC
ATGGGGTTGAGACATGACCTGAAACACCACAGGAACCTGCTTTGCTGATA
TCGATGGTATCATTGTATGTCAGATGATAGTAAAGGTTCAAGGTTTCCCT
TCTAGGTTATGCACGATGGATCTCAAGAATAGGTGAAGAGGAAACGCTTT
ACAATTGGATCTTTCTTACGAATCCCTGGAAGCTTGAAATGTGTCCTGCA
GGCCAATGGGGATGCGACGGACCACGCCGATCCGACGGCTGAGGACGACG
GGGGTAGCGTAAACCAGTTGACCGTGCTGTCCGAAGCAGAGGAGGAGCTC
AAGCATTCGTTCGACGCTCACATCAAGTTTCTCGCGGATGTAGGTGGAAT
CATACTGTCATCGTATATATATCTATGTTTAGGTGTTTCGAAATTTCCAC
GTTTTTCGGTTTGGAAGAAATTTCCCCGGGGCAGAGGAAGAAATTATGAC
TTTTTTTTTTTTTCAATTGTTTTCATGTGCTCTCTTCTTTTTGCTGGATT
GTGGTGTTTTATCCGAGTTCAGGGGAGAAAACCGTATGAGTGAGTTATCC
AAATTTTGTCGTTTGCAATGTTGCTTGTTTTCTCCTCTGTTAGCCTTCGC
TTCTTGAATGTGTTTGGCGGGGGGTACATGGGATTACCCTCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCTCCCCCTCCCCCCTCCTTCTTCTCTCTTT
TTCTTTCTTTTCCCTCTTCTCCCCACCCTTCTCCCCTTTTATTTTTAAGG
TTATATATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTGTC
TCCTCTCCTCTTTGATTTTTGGTGGGGGGGTTAAGTTGATATTCCCCCCC
CCCCCCCCCCCCCCCTCCCGTTAAGTTTCGTTTTCTCGTAGTATCTCTCT
TTTTCTGTCTCCACCCTTGTACATTACCAAATCATCGTTTCAACGACAAC
ATATTCGACGTGCAGCATACATGATATACCACAGTTTTGCATTTTTGCTA
TAACTCTAACTAGGCCTGAATAGATTTGACATGGAGGTGTGGCACACACC
TGTGCTTTTCTAGCTCTGGCGCAATTCTATCGCACGAGTAACTCGTCCAC
CTTTGCCAAGGAAGTTATTTTTCACGTATTGTATTTGGTTGAAATTCTTG
CCAGACTTCGACATGTGCCAGCCACGTTGTTGTGCTTCGGGACTGTGCAC
TTCCATTTGCAACGCAAACGAACGTTTCTTAGGCGGAGCTGGCAAAGAAG
GCCGAGATGGAGGCGTTTCAACGGGCGGGGGAAGCCTATCTGTCGAATCT
ACAAAAATCTCGTGCGGTGCGTTTTTTTCTCCTAGTGTCGAGTCCAATGC
CTCAGAACCAGTGTCAAAGGATATAAGTTTCTATGTGCAAAACCGAACAG
AGATGAACACGTAATTCGCATAAAATATCTCTCGGTGGACGAATTTGTCT
AGTTTTTGTCGGGTTGTGCCTGCGAAGACATTGTATAAGGCCAACCGATT
AGCCTTGGTGCGTACATCGTGGTTAGTACATCGTACCGGTCAGCTCACAA
GAATCAAGAATATTCCCGACTGTTGAAGAGAAATGGCCTTTTAGAAGAAA
TATGCCCCATCTGCTAAAGTTTATTAGAGCATGCAAAGTATTCAGACCTG
GATCTTATTTTCATGCAAAATATGTGCAGAGCGAAGTGATGCGATATGCG
TGGAAAGTAACTTCCAGTTTCGACGCAGAGAGGTCTGTTTGTGACTATCG
TGATGATACGATTCGGGGCGACGGGAATCGAGTCTTGTATGTCATGTCAT
GGTGCTTGTGTTTTCTTGGAAGAATTTGGAATACTGTGTTGAAGTGTCTA
GGGTCATAAAGACGGCTGTTTTTCTTCGGACAGCTTGATGTTGACTCTGT
TGGTGGTTGCCAGCGCAGCCGTAGTCTCACTATAAGCTGTTCCTAGTTTA
AGTCATTCACGTTGGAGGTGATTTTTTTTATTTTATTTTTTTTCATGTTT
ACCCTTAAGGATTGGACTTCATAATCACCAAAATATTGGTTTCCCAATTA
ACAACCGTGAATAATGACCAACATGTGTACAGAATGTTAGCTGGCTCCAG
GTTATTGGTGTTGAAATGTAGAGCGAGAACAGAGTAGCATAAGACTGATT
ACAGAGTTGTTCATGCTGGATATCTTTGTGTTGAGTTATCGTGGTTTCTC
AAGAGGGGTTTTGTTGAATGTTGGCGTGTTTCCCGGAGGGAAAAACTGTA
CCTTTTCCACTGTTGAGGAGCATATAGCCATTGCTATGGCTGTCGGTCAT
GAAACTTGCCAAATCCTTGGGAGCCGAATGGGTTCAGGCTGTTGGCCCTC
GTTTATTATATTGGGTAGTGTTCAATATGTATTTTTTGACAGTGTTGATG
AGTTAGTGTGGTCGCAATCGCGATCGCGATATTCAATAACCTGTATTGGT
GTGATCTAAATCATGAAGAATTTTTGTTCTCTATTGTTCTCTATTGGTAA
ATTTGAGCATTAGAATGTACTGGCCTGATTTAATCTTGGCCACTGCACTA
TTGTTTGGATCTAATATCTGGGCTGATTTCACGAAAGCAAATCGATATGG
TGTCATCTTCCATTTCTGACGCCATTTTTGAGAGGTGGGTCATGGGATTT
TGTATGCGTGTTACTTGCTTGATTCCCGAGGTCGCCGGTGTTTGGCGTTT
TTGGCCAATTATTTGAGGTCTCAGGAAAATTTGAGGAATAAGAGCATCCT
CGGGCCGGTGAAGCAAATAACGTAAGACAAAAAAAGACCGAACGCTGGTA
ACCACGGGAATCAAGCAAGTAACTGGTGTACATTTTTTTCATGACCTAGC
TCTTAGGAACGGAATGAGAACATGGATGAAACAAAATTCAACGAGGCCCG
CGTACAGAATAATATGCGTTATTAAACTGATTTTAGTGACGATTAGAGAA
GCGGAACGCGGCGTGTTTTTTTTGGGGGGGTGGGGAGGGGGTGGTTTTCG
ACGTCGTTTTTCCAGGTTTGTTGACAAAAATTCATACATGTGTTCCTTAC
TTGATGGCCGAGGTGGTCTGTGTTTCAACGTTATGAGTTTCGCCGTTTTT
CACCAGTTTCATGGGGTCCCGGTGCACTCATTAGCCCTTGCATCAGTCTT
CGATCCGAGGAAATCAGCAGAAGAAAAAACATGTTGGAAAAAGAAAAAAA
AAGCCGTGGCGACGTTGGCAGTCAAGTGAACCATGGATACACGTGTGCAA
ATTGTCATAATCCAAGCGTTAGAACCGGCGTGATCCATTCAACGAACGCA
ATACCTCCCAGCGGGACGGTTATGGTGCCACAGACCGATTTGTTTTGGCT
GCAATTTTGGAAAGTATGTTCAAGGATTAAAGAGCAGGAGTAACAAAATT
TGGTGTTATGGTCGTGACCACGCCAAGGTTTCGATAAAAATGTGGGTGCA
CCTACAAAAACACGGCGTATCTTGCGGTTTTGGGAGATTTTTGAGTTTTT
GGGGAGATTGCGCTATAGTATCTCTAGACGCTTGCAGGCCCTTGATTCAC
ACGCAGGTAGCAGTTCACTACCGATTGGCACTGTATATTAAGCCACACCT
TCGTGTTCCATGGCGCGTGAGGATCTGCTGGTTACTTCGTTTGGCTCATT
TGGTGCAGTGTACGTCAAGAACATAGTGGAAGACACTTTTGGGGGGTTCT
TCCCGAACCAGCCCGTACGTGACAATTCACTATATAAGCTTTACAAAAAA
TGTATTTTTGAAAAAAAAGAAATGATTGTTAATGACTCATTTCTTCGTTG
TTGACCGTGGCATTAATGTTGACCCGCAGGTAACGAAGGAACACGCCCTG
ACGTTGCGAAAATCTTTGCTGGAACAGCGTCAACGCATCACCCGCGTGCG
CATGGAGGTATTTGCTTGCTTTTTCACGTGCTGCCATTTTTTTCGAGGGA
TGTCAAGTATATACTATGTTATTCAATCCTTGAAATTGCTTATGATTTCC
AGGGGTAAAGTAGCGCAGCAGGTAGGCGTGCGCAAGGCGCAACGAAACCC
AATTGTCGAATAGTCGCTCGCTTTTTTCGTCGTTGCTCCTCCTCTTGGAT
GGAAACAGTCCAACATGTTGAGGAATATGCGAGAAAAGCCTAGATACGCC
AAGTAGATCGACTCTGAGCACTGTTTTTCTCATATATAAAATACAACCCC
CCCTCGCAGGAAGTAGACACTGAGAGGGAACGCAACCGACTCCAAAGCCA
ACAGCGTGAGGCCCGGCTCAAAGCAGAAAAAGAGGCGTTGTCCGCAGCGT
GCGTGAAAGAGGCTGCCGAGCTGGGCTCGGCGTGGGCAGCAGTAGAGGCA
GCTGCTGGATTCAACACCGCCTCCGGAGAGTCCACAACAGGCGGGGATGG
CCCCAGCCTAGCCCCGAGAATTGCACCAGCAACAGCGGCAGCAGCTGCCG
CTGCCGCCGCCGCCGCCGCTGCCGCCGTCGCTGCCGTCGTAGTACCAGAT
CCAGCACCACCAGCATCAGCTGGTACCCTCGAGGGAAACGGGACTTTTGG
TGGTTAGAAGAATCAATATGCGCGCAGGGGCAGCGGGGTGGGTAGATGGG
TTTTTGACGGGAGACGCAAGTATGCCATACACTTTGGGTATGTTTTCCGG
CGAGTTTTCGGGCTGATGGACAACGGCGAGAATAAACGAATAAAGAAGCG
GCCTGCGGTGGGCCCATTTATTTCCCCAGTCAGGACGTGTTCGTGCGCGT
CCCTTTTGGCTTGGCATAGAGCGCTGTTGCCGATGATATATGTGCTCCGC
ATTCAGGGTATATACATGTGTAACGAATACAAACACTTCTAAAGGCCCCG
GGCCGTTGGCGTTCATGCACTCGGGCAGTAGGCTGGGGGAAGCGAGAGGT
TGGCTAGTTGGGCGACCGAGAGTATTGCGGCTGACGGGGGTTGGGATGAA
TACATTGGGAAACGTTGGGATCTTGTGGTGTGTGGTGAGTTTTCGTTGTT
GCGTTGATGTTTTTTGTGGGTATTTTTGTAGTCTTTTTATTTTTTTAGGT
TCGGAGCCCGTACTCATGAATACGTGTACTGTAAGTGCGGTAGGTAGGTC
TGTTGGTGTCTCATGACAGACCTGGCGTTTTGTACATTCGTGTCTTGTGA
TGTTTGCCATGTTACTATTCGAGATTTGTACGTGCTTGACACAACTTCTT
CTGAGGTGACCTCTAATATGAAGCCGTCGGCCACGCATTTCCGTGAAACA
CGGCGTGTGTGTCATGAATAGACGTGTCTTCGACGAAGTTGATGTAGAAT
TATTCTTACAACCGCAGCCGGTTTATCCTGCTCTACTTTGAGGCGATTTA
GAGATTTTAGTAAGGTATAGGTAGCACGGGAACAGGCGTGCTTATGCCTC
AACTCAGAACCCTACATATGCACCGCTTCTCTAGGTGCGTTAGAGTCGAT
TTCATCAGCAGCAATCCGCATTTATACATTTTGTCGGCTCTGGTGTGTCG
TGAAAGAGCGTGCCTTTCGCCGGGGCAATCACCAAGACTGCTGACGCTCC
TCTGGAAACATGAGAGCCACCGTTTACCATGTGTACCACTTCAGGTGGTG
CACGTGTTCGTACGGTCGATTTTCGCGAACTAGTCGCCCATACCGTCGTA
CTAGCCAGATCTTTCACACGACGGATTTACCGGAGTCGCTGGCGCCATTT
GGCTATCACTCCGGGTACTGGTGGTTCATGCTTATCGGTCTCGTCTGGAG
ATAAAGGAGTACACCTCCCTTTTCTCGCAAAATATCCTCTCTTCAGCGGT
CTTTCCAGTTTCATTACTGGGCTTCTATGTAGCTTACAGAATTCTTTCTG
TCCGTCCG back to topCoding sequence (CDS) from alignment at H-paniculata_contig4233:2..6209+ >mRNA_H-paniculata_contig4233.10825.1 ID=mRNA_H-paniculata_contig4233.10825.1|Name=mRNA_H-paniculata_contig4233.10825.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=972bp|location=Sequence derived from alignment at H-paniculata_contig4233:2..6209+ (Halopteris paniculata Hal_grac_a_UBK monoicous) ATGGAGGCGTTTCAACGGGCGGGGGAAGCCTATCTGTCGAATCTACAAAA ATCTCGTGCGATGGAGGCGTTTCAACGGGCGGGGGAAGCCTATCTGTCGA ATCTACAAAAATCTCGTGCGGTAACGAAGGAACACGCCCTGACGTTGCGA AAATCTTTGCTGGAACAGCGTCAACGCATCACCCGCGTGCGCATGGAGGT AACGAAGGAACACGCCCTGACGTTGCGAAAATCTTTGCTGGAACAGCGTC AACGCATCACCCGCGTGCGCATGGAGGAAGTAGACACTGAGAGGGAACGC AACCGACTCCAAAGCCAACAGCGTGAGGCCCGGCTCAAAGCAGAAAAAGA GGCGTTGTCCGCAGCGTGCGTGAAAGAGGCTGCCGAGCTGGGCTCGGCGT GGGCAGCAGTAGAGGCAGCTGCTGGATTCAACACCGCCTCCGGAGAGTCC ACAACAGGCGGGGATGGCCCCAGCCTAGCCCCGAGAATTGCACCAGCAAC AGCGGCAGCAGCTGCCGCTGCCGCCGCCGCCGCCGCTGCCGCCGTCGCTG CCGTCGTAGTACCAGATCCAGCACCACCAGCATCAGCTGGTACCCTCGAG GGAAACGGGACTTTTGGTGGTTAGGAAGTAGACACTGAGAGGGAACGCAA CCGACTCCAAAGCCAACAGCGTGAGGCCCGGCTCAAAGCAGAAAAAGAGG CGTTGTCCGCAGCGTGCGTGAAAGAGGCTGCCGAGCTGGGCTCGGCGTGG GCAGCAGTAGAGGCAGCTGCTGGATTCAACACCGCCTCCGGAGAGTCCAC AACAGGCGGGGATGGCCCCAGCCTAGCCCCGAGAATTGCACCAGCAACAG CGGCAGCAGCTGCCGCTGCCGCCGCCGCCGCCGCTGCCGCCGTCGCTGCC GTCGTAGTACCAGATCCAGCACCACCAGCATCAGCTGGTACCCTCGAGGG AAACGGGACTTTTGGTGGTTAG back to top
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