mRNA_H-paniculata_contig42317.10824.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig42317.10824.1
Unique NamemRNA_H-paniculata_contig42317.10824.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig42317.10824.1 vs. uniprot
Match: D8LD91_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD91_ECTSI)

HSP 1 Score: 120 bits (302), Expect = 1.330e-30
Identity = 59/74 (79.73%), Postives = 64/74 (86.49%), Query Frame = 1
Query:   13 DHRQECWFCLASPTLEDHLVCSVADEVYLAQPKARSKRSLVPGHVLIIPVSHQQRYSELSVEGAQEAERYKQSF 234
            D R ECWFCLASP LEDHLVCSVADE+YLAQPK      LVPGHVLI+PVSHQQRYSELS EGA+EAE+YK+SF
Sbjct:  253 DGRLECWFCLASPQLEDHLVCSVADEIYLAQPKG----GLVPGHVLIVPVSHQQRYSELSAEGAKEAEQYKESF 322          
BLAST of mRNA_H-paniculata_contig42317.10824.1 vs. uniprot
Match: A0A836CFA8_9STRA (CwfJ C-terminus 1-domain-containing protein-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFA8_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 5.950e-18
Identity = 42/71 (59.15%), Postives = 53/71 (74.65%), Query Frame = 1
Query:   13 DHRQECWFCLASPTLEDHLVCSVADEVYLAQPKARSKRSLVPGHVLIIPVSHQQRYSELSVEGAQEAERYK 225
            D ++ECWFCLASPTLE+HLV +VA+E Y+A PK      LVP HVLI+P++H QRYSELS    +E E +K
Sbjct:  602 DQQRECWFCLASPTLEEHLVTNVAEEAYVALPKG----GLVPDHVLIVPIAHIQRYSELSDACVKEVEAFK 668          
BLAST of mRNA_H-paniculata_contig42317.10824.1 vs. uniprot
Match: A0A7S2F7S3_9STRA (Hypothetical protein n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2F7S3_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 7.290e-14
Identity = 38/76 (50.00%), Postives = 46/76 (60.53%), Query Frame = 1
Query:    7 PPDHRQECWFCLASPTLEDHLVCSVADEVYLAQPKARSKRSLVPGHVLIIPVSHQQRYSELSVEGAQEAERYKQSF 234
            P   R +CWFCLASP LE HL+ SVA+ VYLA PK      +VP HVL++P+ H  R S+L      E  RYKQ  
Sbjct:  117 PSFERHDCWFCLASPQLEAHLIVSVAEHVYLAIPKG----GMVPQHVLLVPIDHVTRQSDLGPPVLSELLRYKQGL 188          
BLAST of mRNA_H-paniculata_contig42317.10824.1 vs. uniprot
Match: T0PL36_SAPDV (HIT domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=T0PL36_SAPDV)

HSP 1 Score: 72.8 bits (177), Expect = 3.170e-13
Identity = 34/73 (46.58%), Postives = 46/73 (63.01%), Query Frame = 1
Query:   16 HRQECWFCLASPTLEDHLVCSVADEVYLAQPKARSKRSLVPGHVLIIPVSHQQRYSELSVEGAQEAERYKQSF 234
            +R ECWFCLA+PT+E HL+ S+ DE Y+A PK      +VP HVLIIP+ H      LS   A E +++K + 
Sbjct:  283 NRSECWFCLATPTVETHLIVSIGDEAYVAIPKG----PIVPDHVLIIPIQHVSSMRSLSPAAAAEVDKFKSAL 351          
BLAST of mRNA_H-paniculata_contig42317.10824.1 vs. uniprot
Match: C3Y265_BRAFL (Uncharacterized protein n=3 Tax=Branchiostoma TaxID=7737 RepID=C3Y265_BRAFL)

HSP 1 Score: 72.4 bits (176), Expect = 4.360e-13
Identity = 37/76 (48.68%), Postives = 45/76 (59.21%), Query Frame = 1
Query:    7 PPDHRQECWFCLASPTLEDHLVCSVADEVYLAQPKARSKRSLVPGHVLIIPVSHQQRYSELSVEGAQEAERYKQSF 234
            PP     CWFCLASP +E HLV SV D  YLA  K      LVP HVLI+P+ H Q   E++ E  +E E+YK + 
Sbjct:  316 PPKPTGPCWFCLASPEVEKHLVVSVGDHTYLALAKG----GLVPDHVLILPIGHYQSMVEVTAEVHEEIEKYKSAL 387          
BLAST of mRNA_H-paniculata_contig42317.10824.1 vs. uniprot
Match: A0A1V9YNL6_9STRA (HIT domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YNL6_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 5.890e-13
Identity = 32/73 (43.84%), Postives = 48/73 (65.75%), Query Frame = 1
Query:   16 HRQECWFCLASPTLEDHLVCSVADEVYLAQPKARSKRSLVPGHVLIIPVSHQQRYSELSVEGAQEAERYKQSF 234
            +R+ECWFCLA+PT+E HL+ S+ DE Y+A PK      +VP HVLI+P+ H    + L    A E +R++++ 
Sbjct:  276 YREECWFCLATPTVETHLLVSIGDEAYVAIPKG----PIVPDHVLIVPIQHVSSMAALKPAAAAEVQRFQEAL 344          
BLAST of mRNA_H-paniculata_contig42317.10824.1 vs. uniprot
Match: UPI001B7EC605 (CWF19-like protein 1 n=2 Tax=Acipenseroidei TaxID=186622 RepID=UPI001B7EC605)

HSP 1 Score: 71.6 bits (174), Expect = 8.150e-13
Identity = 37/73 (50.68%), Postives = 43/73 (58.90%), Query Frame = 1
Query:    7 PPDHRQECWFCLASPTLEDHLVCSVADEVYLAQPKARSKRSLVPGHVLIIPVSHQQRYSELSVEGAQEAERYK 225
            PP     CWFCLASP +E HLV S+    YLA  K     SL P HVLI+P+ H Q   ELS E  +E E+YK
Sbjct:  324 PPQPTGPCWFCLASPEVEKHLVVSIGTHCYLALAKG----SLTPDHVLILPIGHYQSVVELSSEVVEEVEKYK 392          
BLAST of mRNA_H-paniculata_contig42317.10824.1 vs. uniprot
Match: A0A444UI71_ACIRT (CWF19-like protein 1 n=1 Tax=Acipenser ruthenus TaxID=7906 RepID=A0A444UI71_ACIRT)

HSP 1 Score: 71.6 bits (174), Expect = 8.190e-13
Identity = 37/73 (50.68%), Postives = 43/73 (58.90%), Query Frame = 1
Query:    7 PPDHRQECWFCLASPTLEDHLVCSVADEVYLAQPKARSKRSLVPGHVLIIPVSHQQRYSELSVEGAQEAERYK 225
            PP     CWFCLASP +E HLV S+    YLA  K     SL P HVLI+P+ H Q   ELS E  +E E+YK
Sbjct:  468 PPQPTGPCWFCLASPEVEKHLVVSIGTHCYLALAKG----SLTPDHVLILPIGHYQSVVELSSEVVEEVEKYK 536          
BLAST of mRNA_H-paniculata_contig42317.10824.1 vs. uniprot
Match: A0A1S3QHP3_SALSA (CWF19-like protein 1 n=1 Tax=Salmo salar TaxID=8030 RepID=A0A1S3QHP3_SALSA)

HSP 1 Score: 70.1 bits (170), Expect = 1.220e-12
Identity = 36/73 (49.32%), Postives = 43/73 (58.90%), Query Frame = 1
Query:    7 PPDHRQECWFCLASPTLEDHLVCSVADEVYLAQPKARSKRSLVPGHVLIIPVSHQQRYSELSVEGAQEAERYK 225
            PP     CWFCLASP +E HLV S+    YLA  K     SL P HVL++P+ H Q   ELS E  +E +RYK
Sbjct:   94 PPQPSGPCWFCLASPQVEKHLVISIGTHCYLALAKG----SLTPQHVLVLPIGHYQSVVELSSEVVKELDRYK 162          
BLAST of mRNA_H-paniculata_contig42317.10824.1 vs. uniprot
Match: A0A423TTH4_PENVA (CWF19-like protein 1 n=4 Tax=Penaeus TaxID=133894 RepID=A0A423TTH4_PENVA)

HSP 1 Score: 70.9 bits (172), Expect = 1.520e-12
Identity = 36/73 (49.32%), Postives = 46/73 (63.01%), Query Frame = 1
Query:    7 PPDHRQECWFCLASPTLEDHLVCSVADEVYLAQPKARSKRSLVPGHVLIIPVSHQQRYSELSVEGAQEAERYK 225
            PP     CWFCLASP +E HLV SV + VYLA  K      LVP H+LI+P++H Q  S+L  +  QE E++K
Sbjct:  315 PPKPTGPCWFCLASPEVEKHLVVSVGEHVYLALAKG----GLVPEHLLILPITHFQSTSDLDGDSRQEVEKFK 383          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig42317.10824.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LD91_ECTSI1.330e-3079.73Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CFA8_9STRA5.950e-1859.15CwfJ C-terminus 1-domain-containing protein-like p... [more]
A0A7S2F7S3_9STRA7.290e-1450.00Hypothetical protein n=2 Tax=Dictyocha speculum Ta... [more]
T0PL36_SAPDV3.170e-1346.58HIT domain-containing protein n=2 Tax=Saprolegnia ... [more]
C3Y265_BRAFL4.360e-1348.68Uncharacterized protein n=3 Tax=Branchiostoma TaxI... [more]
A0A1V9YNL6_9STRA5.890e-1343.84HIT domain-containing protein n=1 Tax=Achlya hypog... [more]
UPI001B7EC6058.150e-1350.68CWF19-like protein 1 n=2 Tax=Acipenseroidei TaxID=... [more]
A0A444UI71_ACIRT8.190e-1350.68CWF19-like protein 1 n=1 Tax=Acipenser ruthenus Ta... [more]
A0A1S3QHP3_SALSA1.220e-1249.32CWF19-like protein 1 n=1 Tax=Salmo salar TaxID=803... [more]
A0A423TTH4_PENVA1.520e-1249.32CWF19-like protein 1 n=4 Tax=Penaeus TaxID=133894 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig42317contigH-paniculata_contig42317:361..1181 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score121.7
Seed ortholog evalue1.5e-25
Seed eggNOG ortholog2880.D8LD91
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464
EggNOG free text desc.DNA binding
EggNOG OGsKOG2476@1,KOG2476@2759
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size234
Cds size234
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930286.7870634-CDS-H-paniculata_contig42317:360..4671622930286.7870634-CDS-H-paniculata_contig42317:360..467Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig42317 361..467 -
1691481225.949544-CDS-H-paniculata_contig42317:360..4671691481225.949544-CDS-H-paniculata_contig42317:360..467Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig42317 361..467 -
1622930286.821002-CDS-H-paniculata_contig42317:1054..11811622930286.821002-CDS-H-paniculata_contig42317:1054..1181Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig42317 1055..1181 -
1691481225.9616911-CDS-H-paniculata_contig42317:1054..11811691481225.9616911-CDS-H-paniculata_contig42317:1054..1181Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig42317 1055..1181 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig42317.10824.1prot_H-paniculata_contig42317.10824.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig42317 361..1181 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig42317.10824.1

>prot_H-paniculata_contig42317.10824.1 ID=prot_H-paniculata_contig42317.10824.1|Name=mRNA_H-paniculata_contig42317.10824.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=78bp
QYPPDHRQECWFCLASPTLEDHLVCSVADEVYLAQPKARSKRSLVPGHVL
IIPVSHQQRYSELSVEGAQEAERYKQSF
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mRNA from alignment at H-paniculata_contig42317:361..1181-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig42317.10824.1 ID=mRNA_H-paniculata_contig42317.10824.1|Name=mRNA_H-paniculata_contig42317.10824.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=821bp|location=Sequence derived from alignment at H-paniculata_contig42317:361..1181- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGTACCCGCCGGATCATCGGCAGGAATGTTGGTTCTGCCTGGCGTCTCC AACGCTGGAGGATCATCTCGTGTGCTCCGTAGCTGACGAGGTCTATCTGG CGCAGCCTAAGGCAAGAAGCAAGAGATGTTTTAGTATTTTCTCTATCATG CTCTACCCCGTGGTGTGCTAAGTTGACTTGTGCTGTGACTGTTACGTGAT TTGCTATAATAGCCTTTCCTGTGCTAGGCCGTGCTGTGCTGTGCGGCACA TCAGGTAGAAGTTGATTAAAGCATGACAATACAACTGGCGTAGGATAGCT GTGACACCATCCGGCAGTATGTGTAAAGGTATCCTCGCGGTTTTTTCTCT CGTCTCCTCTGAGGATGTTGAAAAAATAGTTGCTGTCTTGTGCCGTGCTC TGCTCTGCTAGGCTAGGCTAGGCTAGGCTATGCTATGCTGTGCTATGCTA TGCTGTGCTATGCTATGCTATGCTATGCTATGCTAGGCGGTTCAGGATAT AAGACTTTGAGTGTACCCAATAAACAGTCCATTTTACTCCGTGATTTGTC TCGGCTAGTTGTCGTTATTTCTTCCAGAAGTTCATCAAATATTCAATTTT TATTATTATTATTATTATTATTATTTTTTTTTTTCAAAATCGGAATGAAA TAAATTTTGTCACGTACATTATATATAAATATGTATATACTTGATAATTA TTACATGCAGGGAGCACTGGTTCCAGGACATGTCCTCATCATTCCTGTCT CGCACCAGCAACGGTACAGCGAGTTAAGCGTGGAGGGGGCACAGGAAGCG GAGCGTTACAAGCAATCCTTC
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Coding sequence (CDS) from alignment at H-paniculata_contig42317:361..1181-

>mRNA_H-paniculata_contig42317.10824.1 ID=mRNA_H-paniculata_contig42317.10824.1|Name=mRNA_H-paniculata_contig42317.10824.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=468bp|location=Sequence derived from alignment at H-paniculata_contig42317:361..1181- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGTACCCGCCGGATCATCGGCAGGAATGTTGGTTCTGCCTGGCGTCTCC
AACGCTGGAGGATCATCTCGTGTGCTCCGTAGCTGACGAGGTCTATCTGG
CGCAGCCTAAGGCAAGAAGCAAGAGATCAGTACCCGCCGGATCATCGGCA
GGAATGTTGGTTCTGCCTGGCGTCTCCAACGCTGGAGGATCATCTCGTGT
GCTCCGTAGCTGACGAGGTCTATCTGGCGCAGCCTAAGGCAAGAAGCAAG
AGATCACTGGTTCCAGGACATGTCCTCATCATTCCTGTCTCGCACCAGCA
ACGGTACAGCGAGTTAAGCGTGGAGGGGGCACAGGAAGCGGAGCGTTACA
AGCAATCCTTCCACTGGTTCCAGGACATGTCCTCATCATTCCTGTCTCGC
ACCAGCAACGGTACAGCGAGTTAAGCGTGGAGGGGGCACAGGAAGCGGAG
CGTTACAAGCAATCCTTC
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