mRNA_H-paniculata_contig4223.10820.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4223.10820.1
Unique NamemRNA_H-paniculata_contig4223.10820.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig4223.10820.1 vs. uniprot
Match: D7FI96_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI96_ECTSI)

HSP 1 Score: 120 bits (300), Expect = 4.930e-33
Identity = 62/102 (60.78%), Postives = 72/102 (70.59%), Query Frame = 1 
Query:    1 TIRSTRIAYLDRSRWRKCTRTVGRSPRVRVVLRRSRAQAGGYMVQGDPIYSLTANDDGLQVRFSNKESIEDFYPGLSEPLDWDLATGEWVHVKVTTTFGMSM 306
            T R T IA+   + WRKC R  G + R  + L +S    GGYMV+GDPIYSLTAN  GL VRFSN ESIED++ GL  PLDWD ATGEWVHV++ TTFG SM
Sbjct:    5 TTRYTGIAFSGLNPWRKCFRG-GVTSRPALELPKSTRAPGGYMVKGDPIYSLTANKHGLHVRFSNLESIEDYHDGLDMPLDWDAATGEWVHVEIITTFGKSM 105
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BLAST of mRNA_H-paniculata_contig4223.10820.1 vs. uniprot
Match: D7G946_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G946_ECTSI)

HSP 1 Score: 113 bits (282), Expect = 1.260e-27
Identity = 51/69 (73.91%), Postives = 57/69 (82.61%), Query Frame = 1 
Query:  106 RAQAGGYMVQGDPIYSLTANDDGLQVRFSNKESIEDFYPGLSEPLDWDLATGEWVHVKVTTTFGMSMEV 312
            +  AGGYMV+GDPIYSLTAN  GL VRFSN ESIED++ GL  PLDWD ATGEWVHV++ TTFG SMEV
Sbjct:  205 KGSAGGYMVKGDPIYSLTANKHGLHVRFSNLESIEDYHDGLDMPLDWDAATGEWVHVEIITTFGQSMEV 273
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BLAST of mRNA_H-paniculata_contig4223.10820.1 vs. uniprot
Match: A0A6H5KQZ0_9PHAE (WSC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQZ0_9PHAE)

HSP 1 Score: 112 bits (281), Expect = 8.320e-27
Identity = 50/69 (72.46%), Postives = 57/69 (82.61%), Query Frame = 1 
Query:  106 RAQAGGYMVQGDPIYSLTANDDGLQVRFSNKESIEDFYPGLSEPLDWDLATGEWVHVKVTTTFGMSMEV 312
            +  AGGYM++GDPIYSLTAN  GL VRFSN ESIED++ GL  PLDWD ATGEWVHV++ TTFG SMEV
Sbjct:  248 KGSAGGYMIKGDPIYSLTANKHGLHVRFSNLESIEDYHDGLDMPLDWDAATGEWVHVEIITTFGQSMEV 316
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BLAST of mRNA_H-paniculata_contig4223.10820.1 vs. uniprot
Match: A0A6H5JXY2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXY2_9PHAE)

HSP 1 Score: 107 bits (266), Expect = 8.330e-25
Identity = 47/69 (68.12%), Postives = 55/69 (79.71%), Query Frame = 1 
Query:  106 RAQAGGYMVQGDPIYSLTANDDGLQVRFSNKESIEDFYPGLSEPLDWDLATGEWVHVKVTTTFGMSMEV 312
            +  AGGYM++GDPIYSLTAN  GL VRFSN E+IED++ GL  PLDWD  TGEWVHV++ TTFG SM V
Sbjct:   72 KGSAGGYMIKGDPIYSLTANKHGLHVRFSNLETIEDYHDGLDMPLDWDAVTGEWVHVEIITTFGKSMVV 140
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BLAST of mRNA_H-paniculata_contig4223.10820.1 vs. uniprot
Match: A0A6H5JBB3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBB3_9PHAE)

HSP 1 Score: 107 bits (266), Expect = 8.680e-25
Identity = 47/69 (68.12%), Postives = 55/69 (79.71%), Query Frame = 1 
Query:  106 RAQAGGYMVQGDPIYSLTANDDGLQVRFSNKESIEDFYPGLSEPLDWDLATGEWVHVKVTTTFGMSMEV 312
            +  AGGYM++GDPIYSLTAN  GL VRFSN E+IED++ GL  PLDWD  TGEWVHV++ TTFG SM V
Sbjct:  146 KGSAGGYMIKGDPIYSLTANKHGLHVRFSNLETIEDYHDGLDMPLDWDAVTGEWVHVEIITTFGKSMVV 214
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BLAST of mRNA_H-paniculata_contig4223.10820.1 vs. uniprot
Match: D8LDH2_ECTSI (WSC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDH2_ECTSI)

HSP 1 Score: 103 bits (258), Expect = 9.280e-24
Identity = 47/62 (75.81%), Postives = 52/62 (83.87%), Query Frame = 1 
Query:  127 MVQGDPIYSLTANDDGLQVRFSNKESIEDFYPGLSEPLDWDLATGEWVHVKVTTTFGMSMEV 312
            MV+GDPIYSLTAN  GL VRFSN ESIED++ GL  PLDWD ATGEWVHV++ TTFG SMEV
Sbjct:    1 MVKGDPIYSLTANKHGLHVRFSNLESIEDYHDGLDMPLDWDAATGEWVHVEIITTFGQSMEV 62
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BLAST of mRNA_H-paniculata_contig4223.10820.1 vs. uniprot
Match: A0A6H5KAW5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAW5_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 6.970e-17
Identity = 38/64 (59.38%), Postives = 49/64 (76.56%), Query Frame = 1 
Query:  121 GYMVQGDPIYSLTANDDGLQVRFSNKESIEDFYPGLSEPLDWDLATGEWVHVKVTTTFGMSMEV 312
            G M++ DPIY LTAN DGL VRFSN+E  ++F+ GLS+ L+W  +TG+WVHVK+ TTFG  M V
Sbjct:  129 GTMIKLDPIYCLTANKDGLMVRFSNREMPDNFHEGLSKHLNWKDSTGQWVHVKIVTTFGEFMVV 192
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BLAST of mRNA_H-paniculata_contig4223.10820.1 vs. uniprot
Match: D8LDH3_ECTSI (WSC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDH3_ECTSI)

HSP 1 Score: 82.4 bits (202), Expect = 3.230e-16
Identity = 35/66 (53.03%), Postives = 53/66 (80.30%), Query Frame = 1 
Query:  115 AGGYMVQGDPIYSLTANDDGLQVRFSNKESIEDFYPGLSEPLDWDLATGEWVHVKVTTTFGMSMEV 312
            +GG+ ++G+P++S+TAN++G+ VRF+N+ES  D   G+ + L W+ ATGEWVHV++ TTFG SMEV
Sbjct:  152 SGGFQLKGNPLFSVTANNNGINVRFNNEES--DKVEGMDDTLSWEDATGEWVHVEIRTTFGKSMEV 215
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BLAST of mRNA_H-paniculata_contig4223.10820.1 vs. uniprot
Match: D8LDJ9_ECTSI (Oxt n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDJ9_ECTSI)

HSP 1 Score: 74.3 bits (181), Expect = 2.300e-13
Identity = 39/69 (56.52%), Postives = 46/69 (66.67%), Query Frame = 1 
Query:  109 AQAGGYMVQGDPIYSLTANDDGLQVRFSN-KESIEDFYPGLSEPLDWDLATGEWVHVKVTTTFGMSMEV 312
            A  GG  V GDPI S++AN DGL VRFSN  ++I D+Y   S   +W  ATGEWVHV + T FG SMEV
Sbjct:  153 AYNGGQTVDGDPIVSISANLDGLHVRFSNIDKTIPDYYTHDSWYRNWKDATGEWVHVTIDTVFGESMEV 221
[Close]
BLAST of mRNA_H-paniculata_contig4223.10820.1 vs. uniprot
Match: A0A6H5K5S3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5S3_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 4.140e-13
Identity = 38/69 (55.07%), Postives = 46/69 (66.67%), Query Frame = 1 
Query:  109 AQAGGYMVQGDPIYSLTANDDGLQVRFSN-KESIEDFYPGLSEPLDWDLATGEWVHVKVTTTFGMSMEV 312
            A  GG  V GDPI S++AN DGL VRFSN  ++I D+Y   S   +W+ ATGEWVHV + T FG  MEV
Sbjct:  190 AYNGGQTVDGDPIVSISANLDGLHVRFSNIDKTIPDYYTHDSWYRNWEDATGEWVHVTIDTVFGEFMEV 258
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4223.10820.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
D7FI96_ECTSI4.930e-3360.78Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G946_ECTSI1.260e-2773.91Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KQZ0_9PHAE8.320e-2772.46WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JXY2_9PHAE8.330e-2568.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JBB3_9PHAE8.680e-2568.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LDH2_ECTSI9.280e-2475.81WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KAW5_9PHAE6.970e-1759.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LDH3_ECTSI3.230e-1653.03WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LDJ9_ECTSI2.300e-1356.52Oxt n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepI... [more]
A0A6H5K5S3_9PHAE4.140e-1355.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4223contigH-paniculata_contig4223:4617..5660 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score104.8
Seed ortholog evalue2.6e-20
Seed eggNOG ortholog2880.D8LDH2
KEGG rclassRC00467
KEGG koko:K15920
KEGG ReactionR01433
KEGG Pathwayko00520,ko01100,map00520,map01100
Hectar predicted targeting categorymitochondrion
EggNOG free text desc.protein xylosyltransferase activity
EggNOG OGsKOG4157@1,KOG4157@2759
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-00_000750.1
EC3.2.1.37
COG Functional cat.U
CAZyGH3
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons2
Model size315
Cds size315
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930286.1735466-CDS-H-paniculata_contig4223:4616..47311622930286.1735466-CDS-H-paniculata_contig4223:4616..4731Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4223 4617..4731 +
1691481225.6546702-CDS-H-paniculata_contig4223:4616..47311691481225.6546702-CDS-H-paniculata_contig4223:4616..4731Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4223 4617..4731 +
1622930286.1983583-CDS-H-paniculata_contig4223:5460..56601622930286.1983583-CDS-H-paniculata_contig4223:5460..5660Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4223 5461..5660 +
1691481225.6675076-CDS-H-paniculata_contig4223:5460..56601691481225.6675076-CDS-H-paniculata_contig4223:5460..5660Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4223 5461..5660 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4223.10820.1prot_H-paniculata_contig4223.10820.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4223 4617..5660 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4223.10820.1

>prot_H-paniculata_contig4223.10820.1 ID=prot_H-paniculata_contig4223.10820.1|Name=mRNA_H-paniculata_contig4223.10820.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=105bp
TIRSTRIAYLDRSRWRKCTRTVGRSPRVRVVLRRSRAQAGGYMVQGDPIY
SLTANDDGLQVRFSNKESIEDFYPGLSEPLDWDLATGEWVHVKVTTTFGM
SMEV*
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mRNA from alignment at H-paniculata_contig4223:4617..5660+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4223.10820.1 ID=mRNA_H-paniculata_contig4223.10820.1|Name=mRNA_H-paniculata_contig4223.10820.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1044bp|location=Sequence derived from alignment at H-paniculata_contig4223:4617..5660+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACTATCAGATCGACTAGGATTGCATATTTGGACCGGAGTCGTTGGAGGAA
GTGCACTCGAACGGTGGGACGTTCACCACGTGTCCGGGTGGTACTAAGGC
GGAGCCGTGCTCAAGGTAATGTGGCATATTCGTCTCTATGGTAGAGGCAG
CGGGATAGTCCGCCTGTTCGAATACCTGACTTAGTATTGAGACGTACGTA
CCTATCTGCATCGATAGACACGATAGCATGCCTTTCGGAGTGCGCCGGCT
CAAATAAATTAACTGGGTAGGTCAGATGTCGCAAGAAGTATTTGGCGTTA
TCTCGCTTCATATATAAATGCGATGATGGGAAATCCTACATATTCACCAA
CCTCCGTGAACCTTATCGGCACCGCCGCTCCTGAAAATAGTTCGACATAT
CTATTAGGTTCATCGTGACAAAGGACAATGAGAGGGCCGAGGTGAAGGTA
CAAGACGGCCCGGAGGGCTTTCCCTTCCTCAAGAACGAGAAGTACATTTT
CAAGTATAGCTTTCGGGCTGTAGACGGCATGGAGGTTACGAGCAGGTCAG
CTAGCTCCCAGTAGAGTGTGAATGATCAAGAGTCAGGGGGCGGGCCTGTA
CACACTATCCCCCCCGAAGAAGGGATCGTATAAACGATGGGTATGGAACT
AGGAAATAGTACATATTTTGTAAGATACGATGTCACACCATTTGAACGAT
AAGCTGTACGGGCGAAATTAACGGTAAGTAAACGGTTGATCGTATGTTTT
CCTCAGTTAATGATACACTCAATCTGACTCGGATGGCTGATGTATATCTA
CATATTGTGCAGGTTCACACACCTTGGACAACTCAAGGGATCAGCCGGCG
GGTACATGGTGCAGGGAGACCCTATTTATTCGTTGACCGCGAACGATGAT
GGGCTGCAGGTTCGCTTCAGCAACAAAGAGTCGATCGAGGACTTCTACCC
AGGGCTGTCCGAGCCATTGGACTGGGACCTCGCCACGGGGGAGTGGGTCC
ACGTTAAAGTCACAACAACGTTTGGGATGTCTATGGAGGTATGA
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Coding sequence (CDS) from alignment at H-paniculata_contig4223:4617..5660+

>mRNA_H-paniculata_contig4223.10820.1 ID=mRNA_H-paniculata_contig4223.10820.1|Name=mRNA_H-paniculata_contig4223.10820.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=630bp|location=Sequence derived from alignment at H-paniculata_contig4223:4617..5660+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACTATCAGATCGACTAGGATTGCATATTTGGACCGGAGTCGTTGGAGGAA
GTGCACTCGAACGGTGGGACGTTCACCACGTGTCCGGGTGGTACTAAGGC
GGAGCCGTGCTCAAGACTATCAGATCGACTAGGATTGCATATTTGGACCG
GAGTCGTTGGAGGAAGTGCACTCGAACGGTGGGACGTTCACCACGTGTCC
GGGTGGTACTAAGGCGGAGCCGTGCTCAAGCCGGCGGGTACATGGTGCAG
GGAGACCCTATTTATTCGTTGACCGCGAACGATGATGGGCTGCAGGTTCG
CTTCAGCAACAAAGAGTCGATCGAGGACTTCTACCCAGGGCTGTCCGAGC
CATTGGACTGGGACCTCGCCACGGGGGAGTGGGTCCACGTTAAAGTCACA
ACAACGTTTGGGATGTCTATGGAGGTATGACCGGCGGGTACATGGTGCAG
GGAGACCCTATTTATTCGTTGACCGCGAACGATGATGGGCTGCAGGTTCG
CTTCAGCAACAAAGAGTCGATCGAGGACTTCTACCCAGGGCTGTCCGAGC
CATTGGACTGGGACCTCGCCACGGGGGAGTGGGTCCACGTTAAAGTCACA
ACAACGTTTGGGATGTCTATGGAGGTATGA
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