mRNA_H-paniculata_contig4221.10816.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
|
Overview
Homology
BLAST of mRNA_H-paniculata_contig4221.10816.1 vs. uniprot
Match: D8LKB6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKB6_ECTSI) HSP 1 Score: 936 bits (2418), Expect = 2.750e-304 Identity = 693/1588 (43.64%), Postives = 870/1588 (54.79%), Query Frame = 1
Query: 1 QVISAKGMLNMCGLSSRMPEFAAKIDVYMLTLCSAIEDLARNEKEAVQVKLNHKRPGNLARLASAAVNLAGLQSAHSQLVKQKDMVAVLCLLSTHPRLTENVCRAHPLTEPSVTSWLASEGDSASGDGRLACLSAIGHLIRQQEDADAPLLRAGLMSSLHAILSDPL------------------SETLTYPSVGFGVSGAAGGG------VGAPMQAKQSILVGEGRVPSDGLGSARSTVA--GTAATLMSGTSRHMSLGGSAPHPRNRSREVVLCRSS---IEPILTVVAKICFCLTRRVKNRPRLVKDGLPALCAKVAKLTDDDGIRFMAVACVFSLTQSSELRPEIAKSGAADLALEALSAFEY---QGLEKSEYLLAQLAVVAQMARDPQFCRRLAAPEIIDLLTSIARLGTE------------DTDSYNESSDEE-----QETHVQEGCGEE-------GGRGGC------SPVLHPGRRKMRG---SGHKIKVACLYAATLRYCVVTIAESLGWSVYLSDGSSAGGRPSRMDIACMAANLVKIVCSVVLTSGPDETLMSKCALVMAGWSVDPTFVAEMSLRSDVGKSLSMLMRSVTPSTRVCASVALCNIAAAS----------HDQGRSLGDLPEAEASAIAMLELPRGSDGEESKTASIPECTSELAESKGSDGPT------------------EGAGCGIPTAVDVRKNKYKKS----CWLRSTDILPKIISGGLVRATGEVKGNLLRAMNNLMCSPRRRAEIVNGQQMANLFELVHGYTDEVRELAATMLYNLTCERSFHPALLDAGITYTLIDLLGASKFAPTR-ARAARAAHNSTSPAVAGVAVASSPDG------SAGTKTAVGKTAMGEAGENFGPDGAASSNTAMSP----------------------------------TVDTGNEGAGEGSRVKDEEMFDETGDDVAGTLVGKGGHKGIRNMASLCVRRSVLGALMNLTTATLSHPRLDPSAVMTLLTLVVQEDNAESPNEDMAGDLWVAWQTVVLQLSFLQRYRPLIVYHGDGQIFQHLKITNDPLLGKRSVMSATHQRIYRQLIMGTMVNITRDISLYDEFEGQVQVLREFLSEFEHEASGG--SGXXXXXXXXXXXXXXXXXXXXDXIG---TDDIVGADVFL------GEGMCSVGSSGVMEFRGGGAKDWVRHELCGQLVSNLFSSKTLRERLSKKPVAGILVGLLCGQPYR-ANRTPHTGQSVIPEGYEEPRPLLYGGGEEAAAIAARFVCEICVLYAAEGGFELPQRTFEALVKIAHHYNHAIWPTALVGATAINSGST-AVCASLESTTMNVS--GSSQSEFRAGHERKGGITDEKRGGGQQPGSPLRNATEGRNEGAITQE--------ILQQQRIXXXXXXXXXXXXXXXEGAGERPGSSAISNAGTDGSHGRLGDDGLKELGKNSKSNSRQQCSINSLCGSALETGKHALKLSSPRDQDDHGVIEDDGLEGENNKNGATANKLNIGFSGAVGGRQRQATALGARND---KVRREQTTLWTRAVGALCSPSHKDLWLPMIDAGILGAL 4272
++I AKGMLNMCGLSS +P AAK+DVYMLTLCSA+EDLARNE EAVQVKLN KRPGNLA LASA+VNLA L+SAH+QLVKQKD+V VLCLLS P+L ENV RAHP++E SVTSWLA E DSAS DGRLACLSAI HLIR QE+ D PLLRAGLM +LHAIL +P+ SE PS AAG V P+ + G+ ++ S RS VA G + + + +NR R L RSS ++ IL VV K CF +T R +NRPRLV+ GLPALC KV KLT D+ I+FMA AC+FSL QS++L +IA+SGAADLALE L+ G E+SE+LLAQLA+VAQ+A +P+FCRR+A+ ++IDLL ++A LG D + N+ S T +EG G GG+GG SP M+G SG ++KVA Y LRYCVV I E +G ++ +DG G S ++ M LV +VCS VLTSGPDE LM++CA VMA WS + F EM ++ GKSL++LMRSV+P T+ SVALCN+AAA+ +D G + +L + A A+ E G G++ T++ + SDG + EG+G + +D + WL +T+IL I+G L AT +VK NL++AMNNLM S RRA +V G +M LFELVHGYT EVREL A ML+NLTCE FHPALL+AG+T TL++LLG+S + A + S A A + + SA + G + G A + G GA S S T D +GA S TG+ VA + + SL VRR+VLGA+MNLT+ ++S PRLDPSAVM+LLTL++ ED ESPNEDM DLWV WQ VVL+LSF+++YR LIVYHGDGQIF HLK+TNDPL GK SVMS H R Y++LIMGTMVNI+ + SLY+E EGQVQVLREFLSE+EHEASGG S XXXXXXXXXXXXXXXXX X+G +D + AD G GM +DWVRHELC +LVSNLFSSKTLRERLSKKP+AGILVGLLCG P R NRT ++G S G EPRPLLYGGGEEAAAI +RF+CE+C+LY+ EGGF+LPQRTF+ALVKIAH+YN+ N+ ST A AS +S + G S E G + +++ G SP + ++ A+ E + + + ERP S S+ + + + L+ S V +D EG + G +Q + GA D + RE T LW RAVG LCSPSH +LW MID GILGA+
Sbjct: 251 KIIGAKGMLNMCGLSSTLPSLAAKLDVYMLTLCSAMEDLARNESEAVQVKLNLKRPGNLAYLASASVNLADLKSAHAQLVKQKDIVTVLCLLSEQPKLVENVSRAHPVSESSVTSWLALEADSASPDGRLACLSAIEHLIRNQEEVDTPLLRAGLMGTLHAILDEPIAAAEKATEQAQEAGILEASEPSLLPSASGSAIAAAGSATTRGSVVTPPIASSSDSTSAIGKSGAERPSSPRSGVAVTGGGGRGVEVLDAKKIVAMTQTSKKNRER---LLRSSPDVLDRILAVVTKTCFSMTLRGRNRPRLVQHGLPALCGKVMKLTKDENIKFMAAACIFSLAQSADLCSDIAESGAADLALEDLANGGQPGQNGQEESEFLLAQLAIVAQVAVEPRFCRRMASAKMIDLLMTLA-LGNAPDKKAEHGRPRPDAEGTNDGSGRSGGSGAPNTSGREGSGXGNTVIDGGGGKGGVRSDGIGSPRPQRSGWPMKGKRFSGERVKVATPYVGALRYCVVAIVERVG-TILNADGEY-GRASSPSEMTSMVKKLVYLVCSAVLTSGPDEALMARCARVMADWSSEAKFAKEMGVKEAAGKSLAVLMRSVSPKTKSYVSVALCNVAAATQCETQLPSPRNDGGAATPELASTQDKA-AVNEGGGGGHGKD---------TNDHGSQRQSDGGSSAQSLRSREPDNNHMVSHEGSGAAVSETIDNNEGSVAAGDGDRFWLTNTNILRDTIAGCLASATADVKSNLIKAMNNLMVSKERRATLVAGDEMPALFELVHGYTPEVRELVARMLWNLTCEHDFHPALLEAGVTCTLLELLGSSSINNAKKANKQQXXXXXDSNAAASIRGVGNXXXXXXXXVSATDASVSGTQSSGAALLDDGGVGAVSGGETESAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHTADAVGQGATRRSSSS-------TGERVASARLEAVEAVSMGRKPSLEVRRNVLGAVMNLTSLSISDPRLDPSAVMSLLTLIMHEDPNESPNEDMVADLWVTWQAVVLRLSFVEKYRALIVYHGDGQIFSHLKLTNDPLSGKSSVMSMAHDRAYKRLIMGTMVNISCETSLYEELEGQVQVLREFLSEYEHEASGGAHSTGGTXXXXXXXXXXXXXXXXXXXMGLADSDGLESADSDERGFDEDGSGMXXXXXXXXXXXXXSRGRDWVRHELCAKLVSNLFSSKTLRERLSKKPIAGILVGLLCGPPTRWNNRTSNSGGST--SGCGEPRPLLYGGGEEAAAITSRFLCELCILYSTEGGFDLPQRTFDALVKIAHYYNY-------------NASSTPAAAASTQSHPWRIGEGGGSGGEVGGGLAASASVGEKQPQGMDSNTSPKAAGKDSKDSAAVMSERGLASNDNLADSLSMSPPTGTADHEENRRSPSSPERPHDSTRSSLEATAAPAPTEEXXXXXXXXXXXXXXXXXXXXXXXXTQQTTASQKTLQQS---------VGDDWYTEGAGRPHNPAYRH----------GNSKQGSEGGAGEDAWSRTAREITRLWVRAVGWLCSPSHSNLWPHMIDVGILGAI 1781
BLAST of mRNA_H-paniculata_contig4221.10816.1 vs. uniprot
Match: A0A6H5JX20_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX20_9PHAE) HSP 1 Score: 365 bits (937), Expect = 2.800e-101 Identity = 284/682 (41.64%), Postives = 343/682 (50.29%), Query Frame = 1
Query: 1834 EGAGCGIPTAVDVRKNKYKKS----CWLRSTDILPKIISGGLVRATGEVKGNLLRAMNNLMCSPRRRAEIVNGQQMANLFELVHGYTDEVRELAATMLYNLTCERSFHPALLDAGITYTLIDLLGAS----------------------------------------KFAPTRARAARAAHNSTSPAVAGVAVASSPDGSAGTKTAVGKTAMGEAGENFGPDGAASSNTAMSPTVDTGNEGAGEGSRVKDEEMFDETGDDVAGTLVGKGGHKGIRNMASLCVRRSVLGALMNLTTATLSHPRLDPSAVMTLLTLVVQEDNAESPNEDMAGDLWVAWQTVVLQLSFLQRYRPLIVYHGDGQIFQHLKITNDPLLGKRSVMSATHQRIYRQLIMGTMVNITRDISLYDEFEGQVQVLREFLSEFEHEASGG--SGXXXXXXXXXXXXXXXXXXXXDXIGTDDIVGADVFLGEGMCSVGSSGVMEFRGGGAKDWVRHELCGQLVSNLFSSKTLRERLSKKPVAGILVGLLCGQPYR-ANRT-------------------------------------------------------------------------------PHTGQSVIPEGYEEPRPLLYGGGEEAAAIAARFVCEICVLYAAEGGFELPQRTFEALVKIAHHYN 3501
EG+G + +D WL +T+IL I+G L AT +VK NL++AMNNLM S RRA++V G ++ LFELVHGYT EVREL A ML+NLTCE FH ALL+AG+T TL++LLG+S + T++ AA P V+G S+ DGS+G VG G G GP+ + T D GEGS + TG+ VA I SL VRR+VLGA+MNLT+ ++S PRLDPSAVM+LLT ++ ED PNE G+L TNDPL GK SVMS H R Y++LIMGTMVNI+ + SLY+E EGQVQVLREFLSE+EHEASGG S XXXXXXXXXXXXXX +G D +G+ S S GG +DWVRHELC +LVSNLFSSKTLRERLSKKP+AGILVGLLCG P R NRT P +PEG EPRPLLYGGGEEAAAI +RF+CE+C+LY+ EGGF+LPQRTF+ALVKIAH+YN
Sbjct: 5 EGSGAAVSETIDSNGGSEAAGDGDRFWLTNTNILRDTIAGCLASATADVKSNLIKAMNNLMVSEERRAKLVAGDELPALFELVHGYTPEVRELVARMLWNLTCEHDFHSALLEAGVTCTLLELLGSSXXXXXXXXXXXXXXXXXDSNAAASIRGVGNGSGGASATDASVSGTQSGAALLDDGGVRP-VSGGETESAQDGSSGD---VGPATSGAGGVGSGPEASTXXXXXXXHTADA----VGEGSTRRSSSG---TGERVASARSEAVEAVSIGRKPSLEVRRNVLGAVMNLTSLSISDPRLDPSAVMSLLTFIMHED----PNE--RGEL-----------------------------------TNDPLSGKSSVMSMAHDRAYKRLIMGTMVNISCETSLYEELEGQVQVLREFLSEYEHEASGGAHSTGGTLGGXXXXXXXXXXXXXXXGLGLAD--------SDGLESADSDERGLDEDGGGRDWVRHELCAKLVSNLFSSKTLRERLSKKPIAGILVGLLCGPPTRWNNRTSNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSKCEGEPPXPNPPLPEGCGEPRPLLYGGGEEAAAITSRFLCELCILYSTEGGFDLPQRTFDALVKIAHYYN 626
BLAST of mRNA_H-paniculata_contig4221.10816.1 vs. uniprot
Match: A0A835YT04_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YT04_9STRA) HSP 1 Score: 92.0 bits (227), Expect = 8.580e-15 Identity = 88/208 (42.31%), Postives = 113/208 (54.33%), Query Frame = 1
Query: 2680 DMAGDLWVAWQTVVLQLSFLQRYRPLIVYHGDGQIFQHLKI--TNDPLLGKRSVMSATHQRIYRQLIMGTMVNITRDISLYDEFEGQVQVLREFLSEFEHEASGGSGXXXXXXXXXXXXXXXXXXXXDXIGTDDIVGADVFLGEGMCSVGSSGVMEFRGGGAKDWVRHELCGQLVSNLFSSKTLRERLSKKPVAGILVGLLCGQPYRA 3297
D DL W VL LS YRPLIV HG+G IF +K T+DPLLG ++ T +R +R+L M + N++ D L++E EGQ+ +LREFLSE++ A XXXXXXXXXXXXXXXXXXX X + + RG RH LC Q+++NL S RERL+++PV L LLC RA
Sbjct: 602 DDGSDLDTMWLAAVLGLSRSAAYRPLIVRHGEGIIFGRIKALSTHDPLLGGGDTLNVTLERRHRELSMAILSNLSCDGELHEELEGQLPLLREFLSEYDAVAX-----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDQLPDPRGD-----PRHLLCAQVIANLLRSAPFRERLARRPVGSALTELLCLDERRA 799 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4221.10816.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig4221.10816.1 >prot_H-paniculata_contig4221.10816.1 ID=prot_H-paniculata_contig4221.10816.1|Name=mRNA_H-paniculata_contig4221.10816.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=1420bp MLNMCGLSSRMPEFAAKIDVYMLTLCSAIEDLARNEKEAVQVKLNHKRPGback to top mRNA from alignment at H-paniculata_contig4221:893..12780- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig4221.10816.1 ID=mRNA_H-paniculata_contig4221.10816.1|Name=mRNA_H-paniculata_contig4221.10816.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=11888bp|location=Sequence derived from alignment at H-paniculata_contig4221:893..12780- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig4221:893..12780- >mRNA_H-paniculata_contig4221.10816.1 ID=mRNA_H-paniculata_contig4221.10816.1|Name=mRNA_H-paniculata_contig4221.10816.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=8520bp|location=Sequence derived from alignment at H-paniculata_contig4221:893..12780- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |