mRNA_H-paniculata_contig42209.10815.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig42209.10815.1
Unique NamemRNA_H-paniculata_contig42209.10815.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig42209.10815.1 vs. uniprot
Match: A0A0C9VSW1_SPHS4 (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Sphaerobolus stellatus (strain SS14) TaxID=990650 RepID=A0A0C9VSW1_SPHS4)

HSP 1 Score: 275 bits (704), Expect = 4.180e-82
Identity = 165/402 (41.04%), Postives = 229/402 (56.97%), Query Frame = 1
Query:    7 MDVDAANLNAPVKEELCANLPPEFSPFSRDIPFVRRLRKSLSGLKQSGRNWNNPLDDFLV*MGLDRSTTDSCLYVSRDEGGETNLLVAVYVDDLVI-ADRREKVDELKRNISHRFRMKDLGSLSCVLGIEVRRHRPNGTIIISQGSYIREVLKIYGFDKCRGVPTPVEEEVKISAPADKPSEPKLFGAVLDNSTEYRSMVGSLMYASTGTRPDIAYAVHQAARRMEGPCREDFSTCKRIFRYLSTVADFGITFGGKSNGHDLERFVDADWAEDAEDRKSTTGYVVFKLNVGAISWCSRKQQLVTWSSTEAEYVAAGEAGKETVYLRELLGSIGFGCRGSTILFKDHKSAINLSRGSGTHCRTKHIGVCWHGVREWIREGILTLKYVQTEDQCADILTKDLSR 1209
            MDV  A LN  +KEE+  NLPP F    R    + +L+K L GLKQ+ R W   L      MG  R  ++  +++  D G    ++VAVYVDDL+I +   E V ++K+++  +F M DLG    +LG+E+ R RP+ T+ ISQ +Y  E+L+ +G   C+  PTP+E  V +          KL  A +D S  Y+S VGSLMY   GT PD+A++V   ++    P  E     KR+ RY+    D G+ F G  N   +E F+DADWA+D  +R S TGYV   L    ISW S+KQ     SSTEAEY+AA  A KE ++LR  +  +GF     T L+ D++SAI L + S  H RTKHI V +H +RE + +  + L Y+ TEDQ AD LTK LS+
Sbjct:  315 MDVKTAFLNRDLKEEIYMNLPPGF----RKPGVIWKLKKGLYGLKQASREWYKKLCTEFESMGFRRCNSNHAVFIKDDNG--IRVVVAVYVDDLLIFSSSIEAVKKVKKDLKGKFEMTDLGEAHWILGMEITRDRPSHTLSISQKAYFAEILERFGMSDCKPAPTPMEVGVSLR---------KLSEAEVD-SQHYQSAVGSLMYGMIGTHPDVAHSVGVLSQHCATPGEEHEKGNKRVLRYIKGTTDLGLVFIGSGNTK-IEVFIDADWAQDKNNRHSLTGYVC-TLAGATISWSSKKQSSTAQSSTEAEYMAATHAAKEALWLRMFMRELGFEQDSPTPLYVDNQSAITLVKNSEFHSRTKHINVRYHFIRENVEDEQIELVYIPTEDQVADALTKGLSK 698          
BLAST of mRNA_H-paniculata_contig42209.10815.1 vs. uniprot
Match: A0A6S7JEY7_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7JEY7_PARCT)

HSP 1 Score: 271 bits (694), Expect = 2.410e-81
Identity = 159/412 (38.59%), Postives = 238/412 (57.77%), Query Frame = 1
Query:    7 MDVDAANLNAPVKEELCANLPPEFSPFSRDIPFVRRLRKSLSGLKQSGRNWNNPLDDFLV*MGLDRSTTDSCLYVSRDEGGETNLLVAVYVDDLVIADRRE-KVDELKRNISHRFRMKDLGSLSCVLGIEVRRHRPNGTIIISQGSYIREVLKIYGFDKCRGVPTPVEEEVKISAPADKPSEPKLFGAVLDNSTEYRSMVGSLMYASTGTRPDIAYAVHQAARRMEGPCREDFSTCKRIFRYLSTVADFGITFGGKSNGHDLERFVDADWAEDAEDRKSTTGYVVFKLNVGAISWCSRKQQLVTWSSTEAEYVAAGEAGKETVYLRELLGSIGFGCRGSTILFKDHKSAINLSRGSGTHCRTKHIGVCWHGVREWIREGILTLKYVQTEDQCADILTKDLSRGQCQRLRNLL 1239
            MDV  A LN  +KEE+    P  F    ++   V RLR+S+ GLKQS R WN+ LD  L  MG  ++T D C+YV ++EGGE   ++AVYVDD+++A + + K++E+K+ ++ +F+MKD+G     LG++V +   +  I I Q +Y + VL+ +G +  +   TPV    K+   AD             +   Y+  VG L+Y ST TRPDIAYAV   AR    P  E +   KRI RYL+   D G+ + G         + DADWA D +DRKST+GYV F+++  AISW S+KQ  V  S+ EAEY+    A +E V+L++LL  +     G  ++ +D+++AI +++ +  H R KHI + +H +RE +    + L+Y  TE+  ADI TK LS  Q  +LR +L
Sbjct:  240 MDVTTAFLNGDLKEEVYMKQPEGFIDKGKEH-LVCRLRRSICGLKQSPRCWNSVLDRKLKNMGFVQTTGDPCIYV-KEEGGEI-FIIAVYVDDILLAGKNDQKINEVKQALAEQFQMKDMGQRHYFLGVKVIQKPDSKEIWIGQEAYTKSVLERFGMESSKPASTPVNPGTKLKKAADDSQRV--------DQVNYQCAVGHLLYLSTKTRPDIAYAVSDVARFSAHPTEEHWIAVKRIMRYLNGTRDMGLLYDGSKTTTSCVGYSDADWAGDLDDRKSTSGYV-FQISNAAISWRSKKQSCVALSTAEAEYMTLASATQEAVWLQQLLSDLKSKPTGPMLILEDNQAAICMAKNAQYHGRAKHIDIKYHFIREHVASAAVKLEYCSTEEMIADIFTKGLSVVQFTKLRKML 639          
BLAST of mRNA_H-paniculata_contig42209.10815.1 vs. uniprot
Match: W7TJ26_9STRA (Gag-pol polyprotein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TJ26_9STRA)

HSP 1 Score: 273 bits (698), Expect = 2.740e-81
Identity = 163/419 (38.90%), Postives = 241/419 (57.52%), Query Frame = 1
Query:    7 MDVDAANLNAPVKEELCANLPPEFSPFSRDI-PFVRRLRKSLSGLKQSGRNWNNPLDDFLV*MGLDRSTTDSCLYVSRDEGGETNLLVAVYVDDLVI-ADRREKVDELKRNISHRFRMKDLGSLSCVLGIEVRRHRPNGTIIISQGSYIREVLKIYGFDKCRGVPTPVEEEVKISAPADKPSEPKLFGAVLDNSTEYRSMVGSLMYASTGTRPDIAYAVHQAARRMEGPCREDFSTCKRIFRYLSTVADFGITFGGKSNGH-DLERFVDADWAEDAEDRKSTTGYVVFKLN----VGAISWCSRKQQLVTWSSTEAEYVAAGEAGKETVYLRELLGSIGFGCRGSTILFKDHKSAINLSRGSGTHCRTKHIGVCWHGVREWIREGILTLKYVQTEDQCADILTKDLSRGQCQRLRNLLM 1242
            MDVD A L + ++E++    PP +  +  +    V RLRKSL GLKQSGRNW+  +D +    GL  S  D CLYV     GE  L++ +YVDDL+I ++ R   D+ K++IS  F MKDL  L  +LG+ ++R+R N T+ ISQ  YI  +L  +G   C+ V TP+E  +            K+ G  +    EY  +VGSL+YA+  TRPDIA+AV    + ++G  +E +   KR+ RYL    D G+ + G S G   L  + DAD+A D ++R+ST+GY  F L+    V  I W +++Q +V  SS E+E ++A  A +  VY+R+LL  +GF     T++ +D+++ I +     TH RTKHI V +H VRE +    + L Y+ T+ Q ADILTK LS  +   +RN +M
Sbjct:  304 MDVDTAYLQSDLEEKVYIKQPPGYEKYGPNGGELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGLHPSYADPCLYVKFASSGEI-LVIVLYVDDLIIGSNSRTMTDKFKQDISREFSMKDLKELDWILGMGIKRNRENRTMEISQTGYIGMMLNKFGMADCKSVLTPMEGTLT-----------KMDGKDVKPDNEYMKLVGSLLYAALVTRPDIAFAVQSLGKHLQGSNKEHWIAAKRVLRYLKGTRDVGLKYTGNSTGSFTLVGYADADYAGDKDNRRSTSGYT-FTLSHGDDVNTIDWKAKQQDVVALSSAESELISACSATQNAVYIRQLLMDLGFKQDEPTVIMEDNQACIAMGNNPITHKRTKHIDVRYHFVREKVESKEVELVYIPTQHQLADILTKPLSSIRLAMIRNRMM 709          
BLAST of mRNA_H-paniculata_contig42209.10815.1 vs. uniprot
Match: A0A0S7JP25_9TELE (POLX n=2 Tax=Poeciliopsis prolifica TaxID=188132 RepID=A0A0S7JP25_9TELE)

HSP 1 Score: 262 bits (669), Expect = 8.960e-81
Identity = 154/374 (41.18%), Postives = 222/374 (59.36%), Query Frame = 1
Query:  112 RLRKSLSGLKQSGRNWNNPLDDFLV*MGLDRSTTDSCLYVSRDEGGETNLLVAVYVDDLV-IADRREKVDELKRNISHRFRMKDLGSLSCVLGIEVRRHRPNGTIIISQGSYIREVLKIYGFDKCRGVPTPVEEEVKISAPADKPSEPKLFGAVLDNSTEYRSMVGSLMYASTGTRPDIAYAVHQAARRMEGPCREDFSTCKRIFRYLSTVADFGITFGGKSNGHDLERFVDADWAEDAEDRKSTTGYVVFKLNVGAISWCSRKQQLVTWSSTEAEYVAAGEAGKETVYLRELLGSIGFGCRGSTILFKDHKSAINLSRGSGTHCRTKHIGVCWHGVREWIREGILTLKYVQTEDQCADILTKDLSRGQCQRLR 1230
            +++KS+ GLKQS R WN     F++ +G  +S++D C++V   +  E   ++AVYVDDL+ I +  E +DELK  +  R++MKDLG LS +LGI V + +    I + Q  YI  +LK YG DK   V TP +  VK+    D  S P      +D ST Y+SMVGSL+YA+  TRPDIA AV   ++    P     +  KRI RYL    +  + F    N  DL  F DADWA D +DR STTG + F L+ GA+SW S+KQ  V  S+ EAEYVA  +A +E  +LR LL  +G   +  T++ +D++ AI +++    H RTKHI + +H +RE +++G + L+Y  T+   ADILTK L+R + +  R
Sbjct:    2 QIKKSIYGLKQSPRCWNKEFTTFMMDLGFKQSSSDPCVFVRLSQELE---IIAVYVDDLMLITESTESMDELKLTLQERYKMKDLGELSYILGISVIQDKEKNCICLHQKQYIETILKKYGMDKANPVATPADISVKLKKD-DGVSNP------VDPST-YQSMVGSLLYAAMTTRPDIAQAVSAVSKFNANPNTAHLTAVKRILRYLKGTVNLALKFDCAGN-KDLIGFSDADWAGDLDDRHSTTGNI-FLLSGGAVSWLSKKQATVALSTAEAEYVALSQAAQEGTWLRRLLNDLGMVTK-PTVILEDNQGAIAIAKNPVDHSRTKHIDIRYHYIRECVQDGEVKLEYCPTDKMKADILTKPLARQKFENFR 361          
BLAST of mRNA_H-paniculata_contig42209.10815.1 vs. uniprot
Match: A0A7D9M6E1_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9M6E1_PARCT)

HSP 1 Score: 262 bits (670), Expect = 9.950e-81
Identity = 147/379 (38.79%), Postives = 230/379 (60.69%), Query Frame = 1
Query:  106 VRRLRKSLSGLKQSGRNWNNPLDDFLV*MGLDRSTTDSCLYVSRDEGGETNLLVAVYVDDLVIADRR-EKVDELKRNISHRFRMKDLGSLSCVLGIEVRRHRPNGTIIISQGSYIREVLKIYGFDKCRGVPTPVEEEVK-ISAPADKPSEPKLFGAVLDNSTEYRSMVGSLMYASTGTRPDIAYAVHQAARRMEGPCREDFSTCKRIFRYLSTVADFGITFGGKSNGHDLERFVDADWAEDAEDRKSTTGYVVFKLNVGAISWCSRKQQLVTWSSTEAEYVAAGEAGKETVYLRELLGSIGFGCRGSTILFKDHKSAINLSRGSGTHCRTKHIGVCWHGVREWIREGILTLKYVQTEDQCADILTKDLSRGQCQRLRNL 1236
            V +L KS  GLKQS R WN+ LD+ L  +G  ++ +D C+YV  ++G     +VA++VDD+++A +  EK+ ++K +I+ RF++KD+G L  +LG++V +   +G + I Q +Y   ++K YG + C+ V TPV+   K +SA  D     +LF     N  EY+S VGSL+Y S+ TRPDI +AV+  A+       E ++  KRIFRYL    ++G+ +   +N  D   F DADWA D  DRKST+GY  F++N  A+SW S+KQ  V  S+ EAEYVA   A +E +++R+LL  +         +++D++SAI +S+    H R+KHI + +H VR+ + +  LT+ Y  T    AD+ TK + + Q ++LR L
Sbjct:   13 VCKLNKSRYGLKQSSRCWNSVLDEHLKSIGFTQTESDPCIYVKEEDGDI--FVVAIHVDDIILAGKTDEKIAKVKESIAERFQVKDMGELKYILGLQVIQE--DGKVWIGQPTYTASIIKKYGMENCKPVETPVDLSSKLVSAMEDS----ELF-----NKEEYQSAVGSLLYLSSATRPDITFAVNNVAKFSANFTNEHWTAVKRIFRYLKKTVNYGLLYSENANP-DCVGFSDADWAGDLNDRKSTSGYT-FQINGAAVSWRSKKQTCVALSTAEAEYVALSAAAQEALWMRQLLTDLNVNIDKPMTIYEDNQSAIAMSKNPQFHGRSKHIDIKYHFVRDQVEKKTLTVLYCPTGSMLADLFTKGIPKEQFKKLREL 376          
BLAST of mRNA_H-paniculata_contig42209.10815.1 vs. uniprot
Match: A0A7D9KES8_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9KES8_PARCT)

HSP 1 Score: 271 bits (693), Expect = 1.060e-80
Identity = 160/412 (38.83%), Postives = 238/412 (57.77%), Query Frame = 1
Query:    7 MDVDAANLNAPVKEELCANLPPEFSPFSRDIPFVRRLRKSLSGLKQSGRNWNNPLDDFLV*MGLDRSTTDSCLYVSRDEGGETNLLVAVYVDDLVIADRRE-KVDELKRNISHRFRMKDLGSLSCVLGIEVRRHRPNGTIIISQGSYIREVLKIYGFDKCRGVPTPVEEEVKISAPADKPSEPKLFGAVLDNSTEYRSMVGSLMYASTGTRPDIAYAVHQAARRMEGPCREDFSTCKRIFRYLSTVADFGITFGGKSNGHDLERFVDADWAEDAEDRKSTTGYVVFKLNVGAISWCSRKQQLVTWSSTEAEYVAAGEAGKETVYLRELLGSIGFGCRGSTILFKDHKSAINLSRGSGTHCRTKHIGVCWHGVREWIREGILTLKYVQTEDQCADILTKDLSRGQCQRLRNLL 1239
            MDV  A LN  +KEE+       F    ++   V RLR+S+ GLKQS R WN+ LD  L  MG  ++T D C+YV ++EGGE   ++AVYVDD+++A + + K++E+K+ ++ +F+MKD+G L   LG++V     +  I I Q +Y + VL+ +G +  +   TPV    K+   AD             +   Y+  VG L+Y ST TRPDIAYAV   AR    P  E +   KRI RYL+   D G+ + G         + DADWA D +DRKST+GYV F+++  AISW S+KQ  V  S+ EAEY+A   A +E V+L++LL  +     G  ++ +D+++AI +++ +  H R KHI + +H +RE +    + L+Y  TE+  ADI TK LS  Q  +LR +L
Sbjct:   92 MDVTTAFLNGDLKEEVYMKQTEGFIEKGKEH-LVCRLRRSIYGLKQSPRCWNSVLDRKLKNMGFVQTTGDPCIYV-KEEGGEI-FIIAVYVDDILLAGKNDQKINEVKQALAEQFQMKDMGQLHYFLGVKVIPKPDSKEIWIGQEAYTKSVLERFGMESSKPASTPVNPGTKLKKAADDSQRV--------DQVNYQCAVGHLLYLSTKTRPDIAYAVSDVARFSADPTEEHWIAVKRIMRYLNGTRDMGLLYDGSKTTTSCVGYSDADWAGDLDDRKSTSGYV-FQISNAAISWRSKKQSCVALSTAEAEYMALASATQEAVWLQQLLSDLKSKPTGPMLILEDNQAAICMAKNAQYHGRAKHIDIKYHFIREHVASAAVKLEYCSTEEMIADIFTKGLSVVQFTKLRKML 491          
BLAST of mRNA_H-paniculata_contig42209.10815.1 vs. uniprot
Match: A0A5S6Q3I8_TRIMR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Trichuris muris TaxID=70415 RepID=A0A5S6Q3I8_TRIMR)

HSP 1 Score: 266 bits (681), Expect = 2.380e-80
Identity = 154/412 (37.38%), Postives = 237/412 (57.52%), Query Frame = 1
Query:    7 MDVDAANLNAPVKEELCANLPPEFSPFSRDIPFVRRLRKSLSGLKQSGRNWNNPLDDFLV*MGLDRSTTDSCLYVSRDEGGETNLLVAVYVDDLVIADRREKVD-ELKRNISHRFRMKDLGSLSCVLGIEVRRHRPNGTIIISQGSYIREVLKIYGFDKCRGVPTPVEEEVKISAPADKPSEPKLFGAVLDNSTEYRSMVGSLMYASTGTRPDIAYAVHQAARRMEGPCREDFSTCKRIFRYLSTVADFGITFGGKSNGHDLERFVDADWAEDAEDRKSTTGYVVFKLNVGAISWCSRKQQLVTWSSTEAEYVAAGEAGKETVYLRELLGSIGFGCRGSTILFKDHKSAINLSRGSGTHCRTKHIGVCWHGVREWIREGILTLKYVQTEDQCADILTKDLSRGQCQRLRNLL 1239
            +DV AA LN+P++EEL    PP F    ++   V  LRKSL GLKQS R WN    D L  +G +++  D CL+  +++ G    ++ +YVDDL++     K+  E+   +   F+ KDLG +   LGI++ R   +G+I++ Q + I ++L+ YG  +C+  PTP+E    +S   + P  P        ++T+YR  +GSL+Y +T +RPDIA  V    R +E P   D+   KR+ RYL+      +     + G DL+ +VDADWA D  DRKSTTG+V F+L    ++W SRKQ +V  SSTEAEY+A   A +E ++LR+LL  +G   +  TI+ +D+++ I +        RTKH+ VC H VR+   +G + L+Y  ++   ADILTK L + +  R  +L+
Sbjct:  138 LDVKAAYLNSPLEEELYVKQPPGFEVQGQEHK-VLLLRKSLYGLKQSARAWNKMATDTLTSLGFEQAMADHCLFSKKEKNGSRTYIL-IYVDDLLVVGATPKITKEVGIQMDKFFQTKDLGEVKNYLGIQIEREG-DGSILLHQRNKIEQLLEQYGLMECKPAPTPMETGF-LSVNQESPPMP--------DNTKYRQAIGSLLYVATVSRPDIAAPVGFLCRHVEKPTEADWKAVKRVMRYLAATKYMTLRLSS-AGGIDLQCYVDADWAGDKADRKSTTGFV-FQLGKNTVAWSSRKQSVVALSSTEAEYLAVSHACRELLWLRQLLKDLGIAVKDPTIIHEDNQACIKMVNSERYGARTKHVDVCHHHVRDLRAQGTIKLQYCPSDKMRADILTKPLCKDKFSRFAHLI 535          
BLAST of mRNA_H-paniculata_contig42209.10815.1 vs. uniprot
Match: A0A7M6DPI8_9CNID (Uncharacterized protein n=1 Tax=Clytia hemisphaerica TaxID=252671 RepID=A0A7M6DPI8_9CNID)

HSP 1 Score: 278 bits (712), Expect = 3.530e-80
Identity = 159/413 (38.50%), Postives = 242/413 (58.60%), Query Frame = 1
Query:    7 MDVDAANLNAPVKEELCANLPPEFSPFSRDIPFVR-RLRKSLSGLKQSGRNWNNPLDDFLV*MGLDRSTTDSCLYVSRDEGGETN--LLVAVYVDDLVIADRREKV-DELKRNISHRFRMKDLGSLSCVLGIEVRRHRPNGTIIISQGSYIREVLKIYGFDKCRGVPTPVEEEVKISAPADKPSEPKLFGAVLDNSTEYRSMVGSLMYASTGTRPDIAYAVHQAARRMEGPCREDFSTCKRIFRYLSTVADFGITFGGKSNGHDL-ERFVDADWAEDAEDRKSTTGYVVFKLNVGAISWCSRKQQLVTWSSTEAEYVAAGEAGKETVYLRELLGSIGFGCRGSTILFKDHKSAINLSRGSGTHCRTKHIGVCWHGVREWIREGILTLKYVQTEDQCADILTKDLSRGQCQRLR 1230
            MDV  A LN  ++E++    P  F   +RD P +  +L+KS+ GLKQS R WN  +D+FL   G  R+  D C+Y  +   G+ +  L+VAVYVDDL+IA    ++  E K+ +  RF M+D   +  +LG++V+R R N  + I Q +++  VL  +  ++C+ V TP+E  +K    AD     KL         +Y+S +G L YAS GTRPDI+ AV   ++ M  P ++ +   KR+ RYL    D+G+ + G  +G  L   F DADWA D + RKST+GYV FK+    +SW S++Q +V  S TEAEYVA  +A +E ++LR L   + F     T +F+D++ AI L++    H RTKHI + +H VR+ + + ++ L+Y  T++  AD+LTK L R Q ++LR
Sbjct:  886 MDVKTAFLNGDLEEDIFMKQPEGF--INRDNPNMACKLQKSIYGLKQSARCWNEKMDEFLKESGFTRNDADPCIYHKQITKGDKSFTLIVAVYVDDLLIACNNIQILREQKQKLGERFEMEDKSEVHFILGMQVKRDRKNRRLTIDQNAFLSSVLNRFNMNECKPVATPLEPSMKFEKLADDEEIVKL--------KDYQSAIGCLTYASIGTRPDISAAVGVLSQHMSKPGKQHWIGVKRVLRYLKGTLDYGLIYEGSESGDILLHGFADADWAGDIDTRKSTSGYV-FKVGNSTVSWKSKRQSIVALSKTEAEYVALSQATQEVIWLRTLFKGMDFEQTDPTKMFEDNQGAIELAKNQPNHSRTKHIDIKFHHVRDAVAKKVIDLEYCPTDEMIADLLTKGLPRPQFEKLR 1287          
BLAST of mRNA_H-paniculata_contig42209.10815.1 vs. uniprot
Match: A0A146H7K8_MYCCL (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Mycena chlorophos TaxID=658473 RepID=A0A146H7K8_MYCCL)

HSP 1 Score: 261 bits (667), Expect = 5.650e-80
Identity = 155/415 (37.35%), Postives = 234/415 (56.39%), Query Frame = 1
Query:    7 MDVDAANLNAPVKEELCANLPPEFSPFSRDIPFVRRLRKSLSGLKQSGRNWNNPLDDFLV*MGLDRSTTDSCLYVSRDEGGETNLLVAVYVDDLVI-ADRREKVDELKRNISHRFRMKDLGSLSCVLGIEVRRHRPNGTIIISQGSYIREVLKIYGFDKCRGVPTPVEEEVKISA---PADKPSEPKLFGAVLDNSTEYRSMVGSLMYASTGTRPDIAYAVHQAARRMEGPCREDFSTCKRIFRYLSTVADFGITFGGKSNGHDLERFVDADWAEDAEDRKSTTGYVVFKLNVGAISWCSRKQQLVTWSSTEAEYVAAGEAGKETVYLRELLGSIGFGCRGSTILFKDHKSAINLSRGSGTHCRTKHIGVCWHGVREWIREGILTLKYVQTEDQCADILTKDLSRGQCQRLRNLL 1239
            MD+  A LN  +KEE+    PP F   +     V RL+KS+ GL QSGR+WN   D  +  +GL ++  D+C+Y  R+  GE  + V V+VDDL+I A  +++ + +++ +   F MKD+G    ++GIEV R R  GT+ +SQ  YI  +L  YGF     V TP+  +        P D P       A      EY+SM+G LMYA+  TRPDIAYAV + ++    P  E  + CKR+FRYLS   ++G+ +G + +G   E + DAD+A + +DRKS +GY  + L   A +W S+KQ  V  S+TEAE+ +  +A +  ++ R L   IG+    +T+L+ D++SA+ L+R    H ++KH  V    VRE +  GI+   Y  T++Q ADI TK L+  +   L  +L
Sbjct:    1 MDIRGAYLNGELKEEVYMRQPPGFEDGTGR---VWRLKKSIYGLHQSGRDWNREFDRKVQSVGLTKTAADNCVYY-RERDGE-QVWVTVWVDDLIILATSKDEGERVRKELGTLFEMKDMGEPRKIIGIEVTRDRSAGTVTLSQRHYIESLLDRYGFSNLNAVSTPLVPDANTKMRQLPKDAPP------AAPSVRAEYQSMIGGLMYAAICTRPDIAYAVGRLSQFAANPGPEHQAACKRVFRYLSGTRNYGLVYGPQRDGVVFEGYCDADYAANLDDRKSISGYA-YMLAGAAFAWSSKKQTTVATSTTEAEFTSLAQAARFAMWCRNLFAGIGYSQDDATVLYGDNQSALKLTRNPEYHAQSKHFDVSNMFVREKVALGIIDTVYCPTDEQLADIFTKALAEPRHLELTRML 403          
BLAST of mRNA_H-paniculata_contig42209.10815.1 vs. uniprot
Match: A0A7D9HZ03_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9HZ03_PARCT)

HSP 1 Score: 268 bits (685), Expect = 7.080e-80
Identity = 154/412 (37.38%), Postives = 245/412 (59.47%), Query Frame = 1
Query:    7 MDVDAANLNAPVKEELCANLPPEFSPFSRDIPFVRRLRKSLSGLKQSGRNWNNPLDDFLV*MGLDRSTTDSCLYVSRDEGGETNLLVAVYVDDLVIADRR-EKVDELKRNISHRFRMKDLGSLSCVLGIEVRRHRPNGTIIISQGSYIREVLKIYGFDKCRGVPTPVEEEVK-ISAPADKPSEPKLFGAVLDNSTEYRSMVGSLMYASTGTRPDIAYAVHQAARRMEGPCREDFSTCKRIFRYLSTVADFGITFGGKSNGHDLERFVDADWAEDAEDRKSTTGYVVFKLNVGAISWCSRKQQLVTWSSTEAEYVAAGEAGKETVYLRELLGSIGFGCRGSTILFKDHKSAINLSRGSGTHCRTKHIGVCWHGVREWIREGILTLKYVQTEDQCADILTKDLSRGQCQRLRNL 1236
            MDV AA LN  +++E+    P  F    ++     +L KSL GLKQS R WN+ LD+ L  +G  ++ +D C+YV  ++G     +VA++VDD+++A +  EK+ ++K +I+ RF++KD+G L  +LG++V +   +  + I Q +Y   ++K YG + C+ V TPV+   K +SA  D     +LF     N  E++S VGSL+Y S+ TRPDI +AV+  A+    P  E ++  KRIFRYL    ++G+ +   +N  D   F DADWA D  DRKST+GY  F++N  A+SW S+KQ  V  S+  AEYVA   A +E +++R+LL  +         +++D++SAI +S+    H R+KHI + ++ VR+ + +  LT+ Y  T    AD+ TK + + Q ++LR L
Sbjct:  256 MDVTAAFLNGELEDEVYMKQPEGFEVKGKEH-LACKLNKSLYGLKQSSRCWNSVLDEHLKSIGFTQTESDPCIYVKEEDGNI--FVVAIHVDDIILAGKTDEKIAKVKESIAERFQVKDMGELKYILGLQVIQE--DAKVWIGQPTYTASIIKKYGMENCKPVETPVDLSSKLVSAMEDS----ELF-----NKEEHQSAVGSLLYLSSATRPDITFAVNNVAKFSANPTNEHWTAVKRIFRYLKGTVNYGLLYSENANP-DCVGFSDADWAGDLNDRKSTSGYT-FQINGAAVSWRSKKQTCVALSTAAAEYVALSAAAQEALWMRQLLTDLNVNIDEPMTIYEDNQSAIAMSKNPQFHGRSKHIDIKYYFVRDQVEKKTLTVLYCPTGSMLADLFTKGIPKEQFKKLREL 651          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig42209.10815.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0C9VSW1_SPHS44.180e-8241.04Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6S7JEY7_PARCT2.410e-8138.59Reverse transcriptase Ty1/copia-type domain-contai... [more]
W7TJ26_9STRA2.740e-8138.90Gag-pol polyprotein n=2 Tax=Nannochloropsis gadita... [more]
A0A0S7JP25_9TELE8.960e-8141.18POLX n=2 Tax=Poeciliopsis prolifica TaxID=188132 R... [more]
A0A7D9M6E1_PARCT9.950e-8138.79Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A7D9KES8_PARCT1.060e-8038.83Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A5S6Q3I8_TRIMR2.380e-8037.38Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A7M6DPI8_9CNID3.530e-8038.50Uncharacterized protein n=1 Tax=Clytia hemisphaeri... [more]
A0A146H7K8_MYCCL5.650e-8037.35Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A7D9HZ03_PARCT7.080e-8037.38Reverse transcriptase Ty1/copia-type domain-contai... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig42209contigH-paniculata_contig42209:252..1541 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score241.1
Seed ortholog evalue7.7e-61
Seed eggNOG ortholog7029.ACYPI24114-PA
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs38DPC@33154,3BI7U@33208,3CTS1@33213,3SQRW@50557,41WYJ@6656,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelInsecta
Best eggNOG OGNA|NA|NA
Exons2
Model size1245
Cds size1056
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig42209.10815.1prot_H-paniculata_contig42209.10815.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig42209 252..1352 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930285.0650773-CDS-H-paniculata_contig42209:251..9241622930285.0650773-CDS-H-paniculata_contig42209:251..924Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig42209 252..924 -
1691481225.2872136-CDS-H-paniculata_contig42209:251..9241691481225.2872136-CDS-H-paniculata_contig42209:251..924Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig42209 252..924 -
1622930285.084044-CDS-H-paniculata_contig42209:969..13521622930285.084044-CDS-H-paniculata_contig42209:969..1352Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig42209 970..1352 -
1691481225.2982972-CDS-H-paniculata_contig42209:969..13521691481225.2982972-CDS-H-paniculata_contig42209:969..1352Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig42209 970..1352 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930285.0990193-UTR-H-paniculata_contig42209:1352..15411622930285.0990193-UTR-H-paniculata_contig42209:1352..1541Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig42209 1353..1541 -
1691481225.3146574-UTR-H-paniculata_contig42209:1352..15411691481225.3146574-UTR-H-paniculata_contig42209:1352..1541Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig42209 1353..1541 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig42209.10815.1

>prot_H-paniculata_contig42209.10815.1 ID=prot_H-paniculata_contig42209.10815.1|Name=mRNA_H-paniculata_contig42209.10815.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=352bp
MGLDRSTTDSCLYVSRDEGGETNLLVAVYVDDLVIADRREKVDELKRNIS
HRFRMKDLGSLSCVLGIEVRRHRPNGTIIISQGSYIREVLKIYGFDKCRG
VPTPVEEEVKISAPADKPSEPKLFGAVLDNSTEYRSMVGSLMYASTGTRP
DIAYAVHQAARRMEGPCREDFSTCKRIFRYLSTVADFGITFGGKSNGHDL
ERFVDADWAEDAEDRKSTTGYVVFKLNVGAISWCSRKQQLVTWSSTEAEY
VAAGEAGKETVYLRELLGSIGFGCRGSTILFKDHKSAINLSRGSGTHCRT
KHIGVCWHGVREWIREGILTLKYVQTEDQCADILTKDLSRGQCQRLRNLL
M*
back to top

mRNA from alignment at H-paniculata_contig42209:252..1541-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig42209.10815.1 ID=mRNA_H-paniculata_contig42209.10815.1|Name=mRNA_H-paniculata_contig42209.10815.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1290bp|location=Sequence derived from alignment at H-paniculata_contig42209:252..1541- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAAGGCATGGACGTAGATGCGGCGAATTTGAACGCCCCGGTAAAAGAAGA GCTGTGTGCGAATCTACCCCCTGAGTTTTCCCCTTTCTCCCGAGACATAC CATTTGTGCGTCGCCTGCGTAAAAGTCTGTCCGGCCTCAAGCAGAGCGGC CGAAATTGGAATAACCCTCTTGACGATTTTCTTGTTTAGATGGGACTCGA CCGTTCCACTACCGACTCATGCTTGTACGTTTCCCGCGACGAAGGGGGAG AGACAAACCTTCTGGTGGCCGTGTATGTTGATGACCTGGTCATTGCTGAT CGTCGTGAGAAAGTAGACGAGTTAAAGCGTAACATAAGTCACCGTTTTAG GATGAAAGACTTGGGCTCTCTCTCGTGCGTGTTGGGAATAGAAGTACGAC GTCATCGCCCTAATGGTACCATAATCATCTCGCAGGGTAGCTACATCCGC GAGGTACTAAAAATATACGGTTTTGACAAGTGTCGAGGAGTACCCACCCC TGTAGAGGAAGAAGTGAAGATTTCGGCACCGGCCGACAAGCCGTCTGAAC CGAAGTTATTTGGAGCTGTACTGTCGGACATTGGCGCAGGAGTACAACAA AGCAACAGAGGAATAAGTGACAATTCAACTGAATACAGAAGCATGGTAGG ATCACTCATGTACGCCTCGACAGGAACTAGACCTGATATAGCATACGCGG TACACCAAGCAGCACGTCGTATGGAGGGCCCATGTCGGGAAGACTTCAGT ACATGCAAGCGCATTTTTCGTTATCTCAGTACTGTTGCTGACTTCGGCAT TACGTTCGGCGGTAAGAGTAATGGTCACGATCTGGAACGATTCGTTGATG CCGATTGGGCAGAAGATGCCGAGGACCGAAAGTCCACAACAGGATACGTT GTTTTCAAGCTGAACGTTGGTGCAATAAGTTGGTGCTCTAGGAAGCAACA GTTAGTCACATGGTCCAGTACAGAGGCAGAGTACGTTGCTGCAGGAGAAG CGGGAAAGGAGACGGTATATCTTAGGGAGTTACTAGGATCAATAGGTTTC GGATGCAGAGGGAGCACGATATTGTTTAAGGACCATAAATCAGCTATTAA TCTCAGTAGGGGATCTGGCACACACTGCAGGACGAAGCACATCGGAGTGT GCTGGCACGGAGTTCGAGAGTGGATTCGGGAGGGAATATTGACATTGAAA TACGTGCAGACCGAGGATCAATGTGCTGACATTTTAACGAAAGATCTCAG CAGAGGACAGTGTCAGAGGCTGAGGAATTTACTCATGTGA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig42209:252..1541-

>mRNA_H-paniculata_contig42209.10815.1 ID=mRNA_H-paniculata_contig42209.10815.1|Name=mRNA_H-paniculata_contig42209.10815.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2112bp|location=Sequence derived from alignment at H-paniculata_contig42209:252..1541- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGACTCGACCGTTCCACTACCGACTCATGCTTGTACGTTTCCCGCGA
CGAAGGGGGAGAGACAAACCTTCTGGTGGCCGTGTATGTTGATGACCTGG
TCATTGCTGATCGTCGTGAGAAAGTAGACGAGTTAAAGCGTAACATAAGT
CACCGTTTTAGGATGAAAGACTTGGGCTCTCTCTCGTGCGTGTTGGGAAT
AGAAGTACGACGTCATCGCCCTAATGGTACCATAATCATCTCGCAGGGTA
GCTACATCCGCGAGGTACTAAAAATATACGGTTTTGACAAGTGTCGAGGA
GTACCCACCCCTGTAGAGGAAGAAGTGAAGATTTCGGCACCGGCCGACAA
GCCGTCTGAACCGAAGTTATTTGGAGCTGTACTATGGGACTCGACCGTTC
CACTACCGACTCATGCTTGTACGTTTCCCGCGACGAAGGGGGAGAGACAA
ACCTTCTGGTGGCCGTGTATGTTGATGACCTGGTCATTGCTGATCGTCGT
GAGAAAGTAGACGAGTTAAAGCGTAACATAAGTCACCGTTTTAGGATGAA
AGACTTGGGCTCTCTCTCGTGCGTGTTGGGAATAGAAGTACGACGTCATC
GCCCTAATGGTACCATAATCATCTCGCAGGGTAGCTACATCCGCGAGGTA
CTAAAAATATACGGTTTTGACAAGTGTCGAGGAGTACCCACCCCTGTAGA
GGAAGAAGTGAAGATTTCGGCACCGGCCGACAAGCCGTCTGAACCGAAGT
TATTTGGAGCTGTACTTGACAATTCAACTGAATACAGAAGCATGGTAGGA
TCACTCATGTACGCCTCGACAGGAACTAGACCTGATATAGCATACGCGGT
ACACCAAGCAGCACGTCGTATGGAGGGCCCATGTCGGGAAGACTTCAGTA
CATGCAAGCGCATTTTTCGTTATCTCAGTACTGTTGCTGACTTCGGCATT
ACGTTCGGCGGTAAGAGTAATGGTCACGATCTGGAACGATTCGTTGATGC
CGATTGGGCAGAAGATGCCGAGGACCGAAAGTCCACAACAGGATACGTTG
TTTTCAAGCTGAACGTTGGTGCAATAAGTTGGTGCTCTAGGAAGCAACAG
TTAGTCACATGGTCCAGTACAGAGGCAGAGTACGTTGCTGCAGGAGAAGC
GGGAAAGGAGACGGTATATCTTAGGGAGTTACTAGGATCAATAGGTTTCG
GATGCAGAGGGAGCACGATATTGTTTAAGGACCATAAATCAGCTATTAAT
CTCAGTAGGGGATCTGGCACACACTGCAGGACGAAGCACATCGGAGTGTG
CTGGCACGGAGTTCGAGAGTGGATTCGGGAGGGAATATTGACATTGAAAT
ACGTGCAGACCGAGGATCAATGTGCTGACATTTTAACGAAAGATCTCAGC
AGAGGACAGTGTCAGAGGCTGAGGAATTTACTCATGTGATGACAATTCAA
CTGAATACAGAAGCATGGTAGGATCACTCATGTACGCCTCGACAGGAACT
AGACCTGATATAGCATACGCGGTACACCAAGCAGCACGTCGTATGGAGGG
CCCATGTCGGGAAGACTTCAGTACATGCAAGCGCATTTTTCGTTATCTCA
GTACTGTTGCTGACTTCGGCATTACGTTCGGCGGTAAGAGTAATGGTCAC
GATCTGGAACGATTCGTTGATGCCGATTGGGCAGAAGATGCCGAGGACCG
AAAGTCCACAACAGGATACGTTGTTTTCAAGCTGAACGTTGGTGCAATAA
GTTGGTGCTCTAGGAAGCAACAGTTAGTCACATGGTCCAGTACAGAGGCA
GAGTACGTTGCTGCAGGAGAAGCGGGAAAGGAGACGGTATATCTTAGGGA
GTTACTAGGATCAATAGGTTTCGGATGCAGAGGGAGCACGATATTGTTTA
AGGACCATAAATCAGCTATTAATCTCAGTAGGGGATCTGGCACACACTGC
AGGACGAAGCACATCGGAGTGTGCTGGCACGGAGTTCGAGAGTGGATTCG
GGAGGGAATATTGACATTGAAATACGTGCAGACCGAGGATCAATGTGCTG
ACATTTTAACGAAAGATCTCAGCAGAGGACAGTGTCAGAGGCTGAGGAAT
TTACTCATGTGA
back to top