mRNA_H-paniculata_contig4217.10804.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig4217.10804.1 vs. uniprot
Match: D7FN08_ECTSI (Kinase, NEK n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN08_ECTSI) HSP 1 Score: 455 bits (1171), Expect = 9.130e-144 Identity = 279/577 (48.35%), Postives = 353/577 (61.18%), Query Frame = 2
Query: 2 VPNLRQRFKRSVQDMNTSNELLTALEHGDIGDVCSSLVDCPRGIASALNTPSLSVKHKLRTPLMVAAMTGDIAKWTATLDAFNQQFANKLQRDVEMRMQLANRDKEGMTMAMLATRSGNMAIVSAVLTEITQTEAKICLEAHDYKRMSLLMHAASVGPASIFQEIFRVILMHKDEKEIAFELPNESEDDKTILMYAAMSGDPMTLKVVANTCRRILAPHQVRELIRQRDSDGLNLLMHAV--CSRNSRLRSPAAIVKDSDTNAXXXXYETTANENDGE--------GGVEDIDTIKSGNASAEVKIAESAEKLELEVLSRDESVVGGLRSINAAAIPVFQVAFTLIKECLWKDEALNELRAIDLWGRSTLTHAVLSGNELLFDAALGAIRSEVEDEEVEEMLETNEGEPEDEPMIAALAVGETSMHKLFGLRVSQVKKAVETKDKLSTLNAKIESFIPGKLIVLFQLLLPQIAEKRQLFLLAVMCILAPLLALGTSIATS-KPSKYARISAETGKLSIFLGAPAMFFWGVGTSTIGQTSPLGWSPSLSATMMAAATICIPAIDSFLYSSSAVTWCDK 1699
VP L + S++D S+ LLT +E GDI D+ L D P G S L TPSL KHK+RTPLM AA TGD+A TATL A NQQ++NKL R+ EMR QL NRD+EGMT MLA RS ++A++ +LTEI TEA LE HD+K M+LLMHAAS GPA IFQE + M A GD +RE++ +RDSDGLNLLMHA C+ S L D D++ ++ + G GG D A K ++A + +E +++E G+ +A +PVF+VA L+ CLW DE L +L+A+DLWGRS LTHA+LSG+E++F+AA GA+R ++DE V EM+ETNEGE ED PMI ALA G T M KL+ LR Q+KK V+ + KLST++AKIE FIPGKL+V+FQLLLPQIAE RQL LL +MC LAPL+ L T+ + SK+ + A + KLS+ LGAPAMFFWGVGTST+GQT+ LGWS SLSAT MAAAT+ IPA+DSF S A DK
Sbjct: 45 VPGLGIERRFSLKDAEESDNLLTCIEDGDIEDLHRLLSDLPGGETSVLTTPSLLAKHKMRTPLMAAAATGDLATCTATLQALNQQYSNKLARESEMRTQLTNRDREGMTALMLAARSSSVAVLGELLTEIYNTEALATLELHDHKHMTLLMHAASNGPAPIFQEAQQA-------------------------MRKAFGGD-----------------EDLREMMVERDSDGLNLLMHAASCCAPASALVPAETPPVDPDSSHKKDGGPAESSRSKGTASKTALTGGGTSPADASSGAVAGDAAKDKKTAVEKTVEADTKEEK---GVNKRDAVVVPVFKVAVRLVTRCLWTDEVLQQLKAVDLWGRSVLTHALLSGHEMMFEAAYGAVRDVLQDELVSEMMETNEGEREDTPMIDALARGNTDMRKLYALRAGQLKKDVDARSKLSTMDAKIEGFIPGKLVVMFQLLLPQIAEGRQLILLYIMCALAPLVKLATTGSVDDSDSKHTGVKARSNKLSVLLGAPAMFFWGVGTSTVGQTA-LGWSSSLSATSMAAATLAIPAVDSFFNSRKASAIGDK 575
BLAST of mRNA_H-paniculata_contig4217.10804.1 vs. uniprot
Match: A0A6H5JBB0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBB0_9PHAE) HSP 1 Score: 255 bits (652), Expect = 9.760e-69 Identity = 195/594 (32.83%), Postives = 294/594 (49.49%), Query Frame = 2
Query: 32 SVQDMNTSNELLTALEHGDIGDVCSSLVDCPRGIASALNTPSLSVKHKLRTPLMVAAMTGDIAKWTATLDAFNQQFANKLQRDVEMRM---QLANRDKEGMTMAMLATRSGNMAIVSAVLTEITQTEAKICLEAHDYKRMSLLMHAASVGPASIFQEIFRVIL-----MHKDEKEIAFELPNESEDDKTILMYAAMSGDPMTLKVVANTCRRILAPHQVRELIRQRDSDGLNLLMHAVCSRNSRLRSPAAIVKDSDTNAXXXXYETTANENDGEGGVEDIDTIKSGNASAEVKIAESAEKLELEVLSRDESVVGGLRSINAAAIPVFQVAFTLIKECLWKDEALNELRAIDLWGRSTLTHAVLSGNELLFDAALGAIRSEVEDEEVEEMLETNEGEPEDEPMIAALAVGETSMHKLFGLRVSQVKKAVETKDKLSTLNAKIESFIPGKLIVLFQLLLPQIAEKRQLFLLAVMCILAPLLALGTS-IATSKPSKYARISAETGKLSIFLGAPAMFFWGVGTSTIGQTSPLGWSPSLSATMMAAATICIPAIDSFLYSSSAVTWCDKVSCVEWRFNFKAWCRWI--HIKREEAAIA 1780
S ++ +SN +L A+E D + L + ++A+ PS+S +H++RTPLM AA TG +A + L A N+ + + + QL D+ GMT+ MLA RSGN+ I+ AV+ + +I E +F VIL +KD E +L S DD+TILM+AA GD M + V++ C+R + P ++R+L++Q DS+G+ LMHA+ + + +P A XXXX G E RDE V+ + V + A L+ +E +L+A D WGR+ HAVL+ +FDA A R + D+E+ ++ N+ + D M AL +M R ++K+A+ +++ ST+ +KI+SFIPGKLIV+FQLLLP++ +L LL +M +AP L+ +A KP + +S+FL APAMFFWG+GTST+G T +GW+ S +A +A ATI IPA+D+F S W DK SC WRF+ +A +W+ H K AA A
Sbjct: 62 SARESESSNRILGAVESRDHAKLREGLSGSVKPPSNAVLAPSMSFEHRMRTPLMAAAATGSLALFATVLHAVNRAIGEQRMETNRISLRKKQLEYMDESGMTLLMLAARSGNVGILEAVVERV-----RIAPE-XXXXXXXXXXXXXXXXXXXXXSAVFTVILNELQRCYKDNVEE--QLLASSADDRTILMHAARCGDQMGVLSVSHACQRFIMPSRLRKLVKQVDSEGVTFLMHAISATSFHTGAPTATXXXXXXXXXXXXXXXXXXXXXA-GEXXXXXXXXXXXXXXXXXXXXXXXXXXGEGAPRDEWVLD-------PGMAVLKSALALV------EEVREQLKATDSWGRTIFGHAVLTRRPKVFDAVFFAAREHILDDEIAALMGINKEDKSDTVMETALQTVPRAMAARVARRDQELKRAITLEERASTIESKIQSFIPGKLIVIFQLLLPEVGSSDKLTLLIIMSAIAPGLSWAAGLVAREKPGSTEK---RRSLVSLFLSAPAMFFWGLGTSTVGMTHGMGWNDSATAAALAVATIIIPAMDAFFNSRKVEQWYDKWSCQRWRFSQRAHAKWVKKHGKVSPAAAA 630
BLAST of mRNA_H-paniculata_contig4217.10804.1 vs. uniprot
Match: D7FST7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FST7_ECTSI) HSP 1 Score: 175 bits (443), Expect = 2.010e-43 Identity = 140/447 (31.32%), Postives = 218/447 (48.77%), Query Frame = 2
Query: 32 SVQDMNTSNELLTALEHGDIGDVCSSLVDCPRGIASALNTPSLSVKHKLRTPLMVAAMTGDIAKWTATLDAFNQQFANKLQRDVEM---RMQLANRDKEGMTMAMLATRSGNMAIVSAVLTEITQTEAKICLEAHDYKRMSLLMHAASVGPASIFQEIFRVILM-HKDEKEIAFELPNESEDDKTILMYAAMSGDPMTLKVVANTCRRILAPHQVRELIRQRDSDGLNLLMHAVCSRNSRLRSPAAIVKDSDTNAXXXXYETTANENDGEGGVEDIDTIKSGNASAEVKIAESAEKLELEVLSRDESVVGGLRSINAAAIPVFQVAFTLIKECLWKDEALNELRAIDLWGRSTLTHAVLSGNELLFDAALGAIRSEVEDEEVEEMLETNEGEPEDEPMIAALAVGETSMHKLFGLRVSQVKKAVETKDKLSTLNAKIESFIPGKLIV 1360
S ++ +SN +L A+E GD + L + A+A+ PS+S +H++RTPLM AA TG +A +T L A N+ + + R QL D+ GMT+ MLA RSG++ I+ AV+ + EA L D+ ++LMHAA +++F I + +KD E +L S DD+TILM+AA GD M V++ C+R + P ++R+LI+Q D +G+ LMHA+ + +P XXXX G E R+E V+ + V + A+ L+KE +L+A D WGR+ HAVL+ +FDA A R + D+E+ ++ N+ + D M AL +M R ++K+A+ +++ ST+ +KI+SFIPGKLIV
Sbjct: 19 SAREAESSNSILGAVESGDHAKLREGLSGSAKPPANAVLAPSMSFEHRMRTPLMAAAATGSLALFTTVLHAVNRAIGEQRMETNRISLRRKQLEYVDESGMTLLMLAARSGSVGILEAVVERVRIVEAPERLLDRDHSATTVLMHAAGARRSAVFTVILDELQRCYKDNVEE--QLLASSADDRTILMHAARCGDQMGALSVSHACQRFIMPSRLRKLIKQVDGEGVTFLMHAISATADHTGAPTTXXXXXXXXXXXXXXXXXXXX----GXXXXXXXXXXXXXXXXXXXXXXXXXXAGEGAPRNEWVLD-------PGMAVLKSAWALVKE------VREQLKATDSWGRTIFGHAVLTRRPKVFDAVFFAAREYILDDEIAALMGINKEDKSDTIMETALQTVPRAMAARVARRDQELKRAITLEERASTIESKIQSFIPGKLIV 446
BLAST of mRNA_H-paniculata_contig4217.10804.1 vs. uniprot
Match: A0A6H5KM21_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM21_9PHAE) HSP 1 Score: 135 bits (340), Expect = 3.720e-29 Identity = 136/524 (25.95%), Postives = 200/524 (38.17%), Query Frame = 2
Query: 152 PSLSVKHKLRTPLMVAAMTGDIAKWTATLDAFNQQFANKLQRDVEMRMQLANRDKEGMTMAMLATRSGNMAIVSAVLTEITQTEAKICLEAHDYKRMSLLMHAASVGPASIFQEIFRVILMHKDEKEIAFELPNESEDDKTILMYAAMSGDPMTLKVVANTCRRILAPHQVRELIRQRDSDGLNLLMHAVCSRNSRLRSPAAIVKDSDTNAXXXXYETTANENDGEGGV----------EDIDTIKSGNASAEVKIAESAEKLELEVLSRDESVVGGLRSINAAAIPVFQVAFTLIKECLWKDEALNELRAIDLWGRSTLTHAVLSGNELLFDAALGAIRSEVEDEEVEEMLETNEGEPEDEPMIAALAVGE--TSMHKLFGLRVSQVKKAVETKDKLSTLNAKIESFIPGKLIVLFQLLLPQIAEKRQ--LFLLAVMCILAPLLALGTSIATSKPSKYARISAETGKLSIFLGAPAMFFWGVGTSTIGQTSPLGWSPSLSATMMAAATICIPAIDSFLYSSSA 1681
PS S +HKLRTPLM AA TG + L AF F + E++ + N +GM L+ D + M+LLMHA S +++FQ + + + P Q RE+IR D D A +A G GG E + T+ G AE +E + + +PV Q + LW E L A D W RS + HA++SG +F+ A R ++ DE+++ +L+ + + + T M +L + + +K V + ST+ AKI++FIPG LIV+FQLLLP+ E L+LL V+C +AP + G +++ + + A FL PAMFFWGVGTS I S W+ S SA +A ATI IPA+D++ A
Sbjct: 67 PSASTRHKLRTPLMAAAATGQMPIVGVVLAAFGDVFM-----EGEVKENMVNARMKGMQKQ---------------------------LDMVDVEGMTLLMHACSTSSSAVFQALSKTV-----------------------------------------------QPSQFREVIRATDXXXXXXXXXXXXXXXXXXXXXXXXXXDPLQTAPPKERLPSAGA--GRGGSTQTEPPPTAGESLATVTEGGGPAEGLASEE------------------VPFVLDPRLPVIQAVLEFARANLWMPEYRKLLEARDGWHRSIIEHAIMSGRTQIFETIFNAFRRDIHDEKIDLLLDPGVETSHAQTSLRRATNSQEGTPMAQLVQEKTTSLKSDVSKRKDDSTVAAKIQAFIPGNLIVIFQLLLPEFDESGDGPLYLLLVLCFIAPFWSWGVAMSVKRDPEITNTRARQTAAKYFLAIPAMFFWGVGTSKIAPNS-FNWAESASAAALAVATIVIPALDTYFSGRGA 490
BLAST of mRNA_H-paniculata_contig4217.10804.1 vs. uniprot
Match: D7FWX2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWX2_ECTSI) HSP 1 Score: 131 bits (329), Expect = 2.140e-28 Identity = 116/379 (30.61%), Postives = 177/379 (46.70%), Query Frame = 2
Query: 572 TILMYAAMSGDPMTLKVVANTCRRILAPHQVRELIRQRDSDGLNLLMHAVCSRNSRLRSPAAIVKDSDTNAXXXXYETTANENDGEGGVEDIDTIKSGNASAEVKIAESAEKLELEVLSRDESVVGGLRSINAAAI-----PVFQVAFTLIKECLWKDEALNELRAIDLWGRSTLTHAVLSGNELLFDAALGAIRSEVEDEEVEEMLETN-EGEPEDEPMIAALAVGE-TSMHKLFGLRVSQVKKAVETKDKLSTLNAKIESFIPGKLIVLFQLLLPQIAEKRQ--LFLLAVMCILAPLLALGTSIATSKPSKYARISAETGKLSIFLGAPAMFFWGVGTSTIGQTSPLGWSPSLSATMMAAATICIPAIDSFLYSSSA 1681
T+LM+A + + ++ T + P Q R++IR D+ G+ +L HAV + + T + XXX TA E + + +G + S L ++ V G S + + PV Q A + LW E L A D W RS + HA++SG +F+A A R +V DE+++ +L+ E + A+ E T M +L + + +K V + ST+ AKI++FIPG LIV+FQLLLP+ E L+LL V+C +AP + G +++ + + A PAMFFWGVGTS I S W+ S SA +A ATI IPA+D++ A
Sbjct: 14 TLLMHACSTSSSAVFQALSKTVQ----PSQFRDVIRATDAHGMTILHHAVNGNGNEQAT---------TRSSXXXXXXTAPPQ------ERLPSAGAGREGSTPTEPPSTAGERLATVTEGGGPVEGQESEDVPFVLDPRLPVIQAALEFARANLWMPEYRKLLEARDGWHRSIIEHAIMSGRTQIFEAVFNAFRRDVHDEKIDLLLDPGVETSHAQTSLRRAMNSQEGTPMAQLVREKTTSLKSDVTKRKDDSTVAAKIQAFIPGNLIVIFQLLLPEFDESGDGPLYLLLVLCFIAPFWSWGAAMSVKRDPETTNTRAS----------PAMFFWGVGTSKIAPNS-FNWAESASAAALAVATIVIPALDTYFSGRGA 362 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4217.10804.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig4217.10804.1 >prot_H-paniculata_contig4217.10804.1 ID=prot_H-paniculata_contig4217.10804.1|Name=mRNA_H-paniculata_contig4217.10804.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=635bp MNTSNELLTALEHGDIGDVCSSLVDCPRGIASALNTPSLSVKHKLRTPLMback to top mRNA from alignment at H-paniculata_contig4217:2001..15127+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig4217.10804.1 ID=mRNA_H-paniculata_contig4217.10804.1|Name=mRNA_H-paniculata_contig4217.10804.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=13127bp|location=Sequence derived from alignment at H-paniculata_contig4217:2001..15127+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig4217:2001..15127+ >mRNA_H-paniculata_contig4217.10804.1 ID=mRNA_H-paniculata_contig4217.10804.1|Name=mRNA_H-paniculata_contig4217.10804.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3810bp|location=Sequence derived from alignment at H-paniculata_contig4217:2001..15127+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |