mRNA_H-paniculata_contig42123.10796.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig42123.10796.1
Unique NamemRNA_H-paniculata_contig42123.10796.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig42123.10796.1 vs. uniprot
Match: UPI000479329C (bifunctional serine/threonine-protein kinase/formylglycine-generating enzyme family protein n=1 Tax=Asinibacterium sp. OR53 TaxID=925409 RepID=UPI000479329C)

HSP 1 Score: 62.0 bits (149), Expect = 7.110e-10
Identity = 24/48 (50.00%), Postives = 37/48 (77.08%), Query Frame = 1
Query:    4 RFLVDMTSGVEYLHRSGFVHGDLKPENLLLVRNHEGRLVVKVADFGMS 147
            + L+D+  G++YLH  G +H D+KP+N+LL R+ + RLV K+ADFG+S
Sbjct:  117 KLLIDVLEGLKYLHNEGMIHRDIKPQNILLGRDKQNRLVAKIADFGIS 164          
BLAST of mRNA_H-paniculata_contig42123.10796.1 vs. uniprot
Match: UPI00199A03D5 (Serine/threonine protein kinase n=1 Tax=Deinococcales bacterium TaxID=2478479 RepID=UPI00199A03D5)

HSP 1 Score: 61.2 bits (147), Expect = 1.090e-9
Identity = 24/48 (50.00%), Postives = 37/48 (77.08%), Query Frame = 1
Query:    4 RFLVDMTSGVEYLHRSGFVHGDLKPENLLLVRNHEGRLVVKVADFGMS 147
            + L+D+  G++YLH  G +H D+KP+N+LL R+ + RLV K+ADFG+S
Sbjct:  117 KLLIDILEGLKYLHSEGVIHRDIKPQNILLGRDKQNRLVAKIADFGIS 164          
BLAST of mRNA_H-paniculata_contig42123.10796.1 vs. uniprot
Match: A0A1T4KNI2_9BACT (Non-specific serine/threonine protein kinase n=1 Tax=Sediminibacterium ginsengisoli TaxID=413434 RepID=A0A1T4KNI2_9BACT)

HSP 1 Score: 61.2 bits (147), Expect = 1.330e-9
Identity = 24/48 (50.00%), Postives = 36/48 (75.00%), Query Frame = 1
Query:    4 RFLVDMTSGVEYLHRSGFVHGDLKPENLLLVRNHEGRLVVKVADFGMS 147
            + L+D+  G+ YLH  G +H D+KP+N+LL R+ + RLV K+ADFG+S
Sbjct:  117 KLLIDILEGLRYLHSEGIIHRDIKPQNILLGRDKQNRLVAKIADFGIS 164          
BLAST of mRNA_H-paniculata_contig42123.10796.1 vs. uniprot
Match: A0A6A5W1B2_9PLEO (Protein kinase domain-containing protein n=1 Tax=Amniculicola lignicola CBS 123094 TaxID=1392246 RepID=A0A6A5W1B2_9PLEO)

HSP 1 Score: 58.9 bits (141), Expect = 8.720e-9
Identity = 26/50 (52.00%), Postives = 37/50 (74.00%), Query Frame = 1
Query:    1 LRFLVDMTSGVEYLHRSGFVHGDLKPENLLLVRNHEGRLVVKVADFGMST 150
            +RF  D+ +G++ +H +GF+HGDLKP N+L+ R  E R V K+ADFG ST
Sbjct:  180 VRFCSDIANGLDAIHEAGFLHGDLKPANVLIFRE-ESRFVAKLADFGFST 228          
BLAST of mRNA_H-paniculata_contig42123.10796.1 vs. uniprot
Match: A0A7S0WKI2_9CHLO (Hypothetical protein n=1 Tax=Chlamydomonas leiostraca TaxID=1034604 RepID=A0A7S0WKI2_9CHLO)

HSP 1 Score: 57.8 bits (138), Expect = 1.800e-8
Identity = 27/49 (55.10%), Postives = 36/49 (73.47%), Query Frame = 1
Query:    1 LRFLVDMTSGVEYLHRSGFVHGDLKPENLLLVRNHEGRLVVKVADFGMS 147
            L  ++DM +G+EYLH    +HGDLKP+NLLL    +G +V K+ADFGMS
Sbjct:   68 LNVVLDMAAGLEYLHSRNILHGDLKPDNLLLRSTPQG-MVAKLADFGMS 115          
BLAST of mRNA_H-paniculata_contig42123.10796.1 vs. uniprot
Match: A0A4Q4QH92_9PLEO (Protein kinase domain-containing protein n=1 Tax=Alternaria gaisen TaxID=167740 RepID=A0A4Q4QH92_9PLEO)

HSP 1 Score: 57.8 bits (138), Expect = 2.230e-8
Identity = 26/52 (50.00%), Postives = 36/52 (69.23%), Query Frame = 1
Query:    1 LRFLVDMTSGVEYLHRSGFVHGDLKPENLLLVRNHEGRLVVKVADFGMSTGQ 156
            +RF  D+ +G+E +H +GFVHGDLKP N+L+ R   G  V K+ADFG S  +
Sbjct:  229 MRFCSDVANGLEAIHEAGFVHGDLKPANILVFRKATG-FVAKLADFGFSANE 279          
BLAST of mRNA_H-paniculata_contig42123.10796.1 vs. uniprot
Match: A0A2P6U241_CHLSO (Kinase n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6U241_CHLSO)

HSP 1 Score: 57.8 bits (138), Expect = 2.240e-8
Identity = 27/48 (56.25%), Postives = 34/48 (70.83%), Query Frame = 1
Query:   10 LVDMTSGVEYLHRSGFVHGDLKPENLLL--VRNHEGRLVVKVADFGMS 147
            L+D+  G++YLH+SG VHGDLKP N+LL   RN     V KV DFG+S
Sbjct: 2169 LLDIAQGLDYLHKSGIVHGDLKPANILLRSARNDRRGFVCKVGDFGLS 2216          
BLAST of mRNA_H-paniculata_contig42123.10796.1 vs. uniprot
Match: A0A8H6H174_FUSOX (Protein kinase domain-containing protein n=1 Tax=Fusarium oxysporum f. sp. conglutinans TaxID=100902 RepID=A0A8H6H174_FUSOX)

HSP 1 Score: 57.4 bits (137), Expect = 3.040e-8
Identity = 22/49 (44.90%), Postives = 35/49 (71.43%), Query Frame = 1
Query:    1 LRFLVDMTSGVEYLHRSGFVHGDLKPENLLLVRNHEGRLVVKVADFGMS 147
            L+   D+ SG+  LHR+G  H DLKP+N+L+ +N  G+ + K++DFG+S
Sbjct:  193 LQLAADVASGLAMLHRNGIAHSDLKPDNILVCKNENGKPIAKLSDFGLS 241          
BLAST of mRNA_H-paniculata_contig42123.10796.1 vs. uniprot
Match: A0A2H3T5F6_FUSOX (Protein kinase domain-containing protein n=4 Tax=Fusarium oxysporum TaxID=5507 RepID=A0A2H3T5F6_FUSOX)

HSP 1 Score: 57.4 bits (137), Expect = 3.050e-8
Identity = 22/49 (44.90%), Postives = 35/49 (71.43%), Query Frame = 1
Query:    1 LRFLVDMTSGVEYLHRSGFVHGDLKPENLLLVRNHEGRLVVKVADFGMS 147
            L+   D+ SG+  LHR+G  H DLKP+N+L+ +N  G+ + K++DFG+S
Sbjct:  193 LQLAADVASGLAMLHRNGIAHSDLKPDNILVCKNENGKPIAKLSDFGLS 241          
BLAST of mRNA_H-paniculata_contig42123.10796.1 vs. uniprot
Match: A0A058Z0L0_FONAL (CMGC/RCK protein kinase n=1 Tax=Fonticula alba TaxID=691883 RepID=A0A058Z0L0_FONAL)

HSP 1 Score: 57.0 bits (136), Expect = 4.160e-8
Identity = 24/40 (60.00%), Postives = 32/40 (80.00%), Query Frame = 1
Query:   28 GVEYLHRSGFVHGDLKPENLLLVRNHEGRLVVKVADFGMS 147
            GV YLH  G+ H D+KPEN+LL R  +GR+VVK+ADFG++
Sbjct:  136 GVAYLHSRGYYHRDIKPENILLNRRPDGRVVVKLADFGLA 175          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig42123.10796.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI000479329C7.110e-1050.00bifunctional serine/threonine-protein kinase/formy... [more]
UPI00199A03D51.090e-950.00Serine/threonine protein kinase n=1 Tax=Deinococca... [more]
A0A1T4KNI2_9BACT1.330e-950.00Non-specific serine/threonine protein kinase n=1 T... [more]
A0A6A5W1B2_9PLEO8.720e-952.00Protein kinase domain-containing protein n=1 Tax=A... [more]
A0A7S0WKI2_9CHLO1.800e-855.10Hypothetical protein n=1 Tax=Chlamydomonas leiostr... [more]
A0A4Q4QH92_9PLEO2.230e-850.00Protein kinase domain-containing protein n=1 Tax=A... [more]
A0A2P6U241_CHLSO2.240e-856.25Kinase n=1 Tax=Chlorella sorokiniana TaxID=3076 Re... [more]
A0A8H6H174_FUSOX3.040e-844.90Protein kinase domain-containing protein n=1 Tax=F... [more]
A0A2H3T5F6_FUSOX3.050e-844.90Protein kinase domain-containing protein n=4 Tax=F... [more]
A0A058Z0L0_FONAL4.160e-860.00CMGC/RCK protein kinase n=1 Tax=Fonticula alba Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig42123contigH-paniculata_contig42123:1605..1763 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size159
Cds size141
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930282.0740082-CDS-H-paniculata_contig42123:1604..17451622930282.0740082-CDS-H-paniculata_contig42123:1604..1745Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig42123 1605..1745 -
1691481223.9475715-CDS-H-paniculata_contig42123:1604..17451691481223.9475715-CDS-H-paniculata_contig42123:1604..1745Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig42123 1605..1745 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930282.0914419-UTR-H-paniculata_contig42123:1745..17631622930282.0914419-UTR-H-paniculata_contig42123:1745..1763Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig42123 1746..1763 -
1691481223.9582365-UTR-H-paniculata_contig42123:1745..17631691481223.9582365-UTR-H-paniculata_contig42123:1745..1763Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig42123 1746..1763 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig42123.10796.1prot_H-paniculata_contig42123.10796.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig42123 1605..1745 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig42123.10796.1

>prot_H-paniculata_contig42123.10796.1 ID=prot_H-paniculata_contig42123.10796.1|Name=mRNA_H-paniculata_contig42123.10796.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=47bp
MTSGVEYLHRSGFVHGDLKPENLLLVRNHEGRLVVKVADFGMSTGQ*
back to top

mRNA from alignment at H-paniculata_contig42123:1605..1763-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig42123.10796.1 ID=mRNA_H-paniculata_contig42123.10796.1|Name=mRNA_H-paniculata_contig42123.10796.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=159bp|location=Sequence derived from alignment at H-paniculata_contig42123:1605..1763- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTCAGATTTTTGGTTGACATGACGAGTGGAGTGGAATACTTGCACAGGAG CGGCTTTGTCCATGGAGACCTCAAGCCCGAGAACTTGCTGCTCGTGCGAA ACCATGAGGGGCGGCTGGTGGTTAAGGTTGCCGACTTCGGCATGTCCACG GGTCAGTGA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig42123:1605..1763-

>mRNA_H-paniculata_contig42123.10796.1 ID=mRNA_H-paniculata_contig42123.10796.1|Name=mRNA_H-paniculata_contig42123.10796.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=282bp|location=Sequence derived from alignment at H-paniculata_contig42123:1605..1763- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACGAGTGGAGTGGAATACTTGCACAGGAGCGGCTTTGTCCATGGAGA
CCTCAAGCCCGAGAACTTGCTGCTCGTGCGAAACCATGAGGGGCGGCTGG
TGGTTAAGGTTGCCGACTTCGGCATGTCCACGGGTCAGTGAATGACGAGT
GGAGTGGAATACTTGCACAGGAGCGGCTTTGTCCATGGAGACCTCAAGCC
CGAGAACTTGCTGCTCGTGCGAAACCATGAGGGGCGGCTGGTGGTTAAGG
TTGCCGACTTCGGCATGTCCACGGGTCAGTGA
back to top