mRNA_H-paniculata_contig42117.10795.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig42117.10795.1
Unique NamemRNA_H-paniculata_contig42117.10795.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig42117.10795.1 vs. uniprot
Match: D8LFW0_ECTSI (SURP motif domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFW0_ECTSI)

HSP 1 Score: 127 bits (319), Expect = 1.980e-34
Identity = 56/66 (84.85%), Postives = 62/66 (93.94%), Query Frame = 1 
Query:    1 RDAERVDKMAAYVCRNGGNFEEMMREREKDNPLLSFIFGGDLHEYYKWSLHCARMGFSPEQRHAQI 198
            RDAE+VDKMAAYV RNGG FE+++REREKDN +LSFIF G+LHEYYKWSLHCARMGFSPEQRHAQI
Sbjct:  117 RDAEKVDKMAAYVARNGGGFEDIVREREKDNKMLSFIFAGELHEYYKWSLHCARMGFSPEQRHAQI 182
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BLAST of mRNA_H-paniculata_contig42117.10795.1 vs. uniprot
Match: A0A6H5J830_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J830_9PHAE)

HSP 1 Score: 126 bits (316), Expect = 2.800e-32
Identity = 55/66 (83.33%), Postives = 62/66 (93.94%), Query Frame = 1 
Query:    1 RDAERVDKMAAYVCRNGGNFEEMMREREKDNPLLSFIFGGDLHEYYKWSLHCARMGFSPEQRHAQI 198
            +DAE+VDKMAAYV RNGG FE+++REREKDN +LSFIF G+LHEYYKWSLHCARMGFSPEQRHAQI
Sbjct:   42 KDAEKVDKMAAYVARNGGGFEDIVREREKDNKMLSFIFAGELHEYYKWSLHCARMGFSPEQRHAQI 107
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BLAST of mRNA_H-paniculata_contig42117.10795.1 vs. uniprot
Match: A0A7T8QVQ7_CALRO (Calcium homeostasis endoplasmic reticulum proteinlike n=1 Tax=Caligus rogercresseyi TaxID=217165 RepID=A0A7T8QVQ7_CALRO)

HSP 1 Score: 65.5 bits (158), Expect = 7.450e-11
Identity = 23/47 (48.94%), Postives = 35/47 (74.47%), Query Frame = 1 
Query:   16 VDKMAAYVCRNGGNFEEMMREREKDNPLLSFIFGGDLHEYYKWSLHC 156
            +DK+A +V RNG  FEEM + ++K+NP  +F+FGG+ +EYY W + C
Sbjct:   15 IDKLAVFVARNGPEFEEMTKSKQKNNPKFAFLFGGEYYEYYTWKVTC 61
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BLAST of mRNA_H-paniculata_contig42117.10795.1 vs. uniprot
Match: UPI001069EE46 (calcium homeostasis endoplasmic reticulum protein-like n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI001069EE46)

HSP 1 Score: 65.5 bits (158), Expect = 7.460e-11
Identity = 25/43 (58.14%), Postives = 32/43 (74.42%), Query Frame = 1 
Query:   16 VDKMAAYVCRNGGNFEEMMREREKDNPLLSFIFGGDLHEYYKW 144
            +DK+A +V RNG  FEEM + ++KDNP  SF+FGGD   YYKW
Sbjct:   23 IDKLANFVARNGTKFEEMTKNKQKDNPKFSFLFGGDYFNYYKW 65
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BLAST of mRNA_H-paniculata_contig42117.10795.1 vs. uniprot
Match: A0A2K1J3V9_PHYPA (Uncharacterized protein n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1J3V9_PHYPA)

HSP 1 Score: 64.7 bits (156), Expect = 1.390e-10
Identity = 22/47 (46.81%), Postives = 37/47 (78.72%), Query Frame = 1 
Query:   10 ERVDKMAAYVCRNGGNFEEMMREREKDNPLLSFIFGGDLHEYYKWSL 150
            +R+DK+  Y C+NG  FE +M++++K+NPL SF+FG + H+YY++ L
Sbjct:   97 KRIDKLVEYACKNGPQFEALMKDKQKENPLYSFLFGAEGHDYYRYKL 143
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BLAST of mRNA_H-paniculata_contig42117.10795.1 vs. uniprot
Match: A0A067FIT8_CITSI (SURP motif domain-containing protein (Fragment) n=5 Tax=Citrus TaxID=2706 RepID=A0A067FIT8_CITSI)

HSP 1 Score: 63.2 bits (152), Expect = 1.840e-10
Identity = 24/47 (51.06%), Postives = 35/47 (74.47%), Query Frame = 1 
Query:   10 ERVDKMAAYVCRNGGNFEEMMREREKDNPLLSFIFGGDLHEYYKWSL 150
            +R+DK+  Y  +NG  FE M+RE++KDNP  SF+FGG+ H YY++ L
Sbjct:  130 KRIDKLVEYATKNGPEFEAMIREKQKDNPAYSFLFGGEGHGYYRYKL 176
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BLAST of mRNA_H-paniculata_contig42117.10795.1 vs. uniprot
Match: A0A0C9RGE3_9HYME (Cherp_1 protein n=1 Tax=Fopius arisanus TaxID=64838 RepID=A0A0C9RGE3_9HYME)

HSP 1 Score: 60.1 bits (144), Expect = 4.040e-10
Identity = 22/45 (48.89%), Postives = 33/45 (73.33%), Query Frame = 1 
Query:   16 VDKMAAYVCRNGGNFEEMMREREKDNPLLSFIFGGDLHEYYKWSL 150
            +DK+A +V RNG  FE+M + ++KDNP  SF+FGGD   YY++ +
Sbjct:   14 IDKLAQFVARNGPEFEQMTKNKQKDNPKFSFLFGGDYFNYYQYKV 58
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BLAST of mRNA_H-paniculata_contig42117.10795.1 vs. uniprot
Match: A0A6V7LWM0_9HYME (SURP motif domain-containing protein (Fragment) n=4 Tax=Braconidae TaxID=7402 RepID=A0A6V7LWM0_9HYME)

HSP 1 Score: 58.5 bits (140), Expect = 4.600e-10
Identity = 21/45 (46.67%), Postives = 33/45 (73.33%), Query Frame = 1 
Query:   16 VDKMAAYVCRNGGNFEEMMREREKDNPLLSFIFGGDLHEYYKWSL 150
            +DK+A +V RNG  FE+M + ++KDNP  SF+FGG+   YY++ +
Sbjct:    7 IDKLAQFVARNGPEFEQMTKNKQKDNPKFSFLFGGEYFNYYQYKV 51
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BLAST of mRNA_H-paniculata_contig42117.10795.1 vs. uniprot
Match: A0A251VEJ8_HELAN (Putative SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein n=2 Tax=Heliantheae alliance TaxID=911341 RepID=A0A251VEJ8_HELAN)

HSP 1 Score: 63.2 bits (152), Expect = 4.840e-10
Identity = 25/48 (52.08%), Postives = 34/48 (70.83%), Query Frame = 1 
Query:   16 VDKMAAYVCRNGGNFEEMMREREKDNPLLSFIFGGDLHEYYKWSLHCA 159
            +DK+  Y  +NG  FE M+RE++KDNP  SF+FGGD H YY++ L  A
Sbjct:  129 IDKLVEYAVKNGPEFEAMIREKQKDNPAYSFLFGGDGHGYYRYKLWLA 176
[Close]
BLAST of mRNA_H-paniculata_contig42117.10795.1 vs. uniprot
Match: A0A5P1EIX5_ASPOF (Uncharacterized protein n=1 Tax=Asparagus officinalis TaxID=4686 RepID=A0A5P1EIX5_ASPOF)

HSP 1 Score: 62.8 bits (151), Expect = 6.470e-10
Identity = 24/45 (53.33%), Postives = 34/45 (75.56%), Query Frame = 1 
Query:   16 VDKMAAYVCRNGGNFEEMMREREKDNPLLSFIFGGDLHEYYKWSL 150
            +DK+A Y  +NG  FE M+RE++KDNP  SF+FGG+ H YY++ L
Sbjct:   79 IDKLAEYAAKNGPEFEAMIREKQKDNPDYSFLFGGEGHNYYRYKL 123
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig42117.10795.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LFW0_ECTSI1.980e-3484.85SURP motif domain-containing protein n=1 Tax=Ectoc... [more]
A0A6H5J830_9PHAE2.800e-3283.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7T8QVQ7_CALRO7.450e-1148.94Calcium homeostasis endoplasmic reticulum proteinl... [more]
UPI001069EE467.460e-1158.14calcium homeostasis endoplasmic reticulum protein-... [more]
A0A2K1J3V9_PHYPA1.390e-1046.81Uncharacterized protein n=2 Tax=Physcomitrium pate... [more]
A0A067FIT8_CITSI1.840e-1051.06SURP motif domain-containing protein (Fragment) n=... [more]
A0A0C9RGE3_9HYME4.040e-1048.89Cherp_1 protein n=1 Tax=Fopius arisanus TaxID=6483... [more]
A0A6V7LWM0_9HYME4.600e-1046.67SURP motif domain-containing protein (Fragment) n=... [more]
A0A251VEJ8_HELAN4.840e-1052.08Putative SWAP (Suppressor-of-White-APricot)/surp R... [more]
A0A5P1EIX5_ASPOF6.470e-1053.33Uncharacterized protein n=1 Tax=Asparagus officina... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig42117contigH-paniculata_contig42117:220..1213 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score112.8
Seed ortholog evalue5.2e-23
Seed eggNOG ortholog2880.D8LFW0
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.Suppressor-of-White-APricot splicing regulator
EggNOG OGs2D0I3@1,2SEA2@2759
Ec32 ortholog descriptionSWAP/Surp
Ec32 orthologEc-05_005320.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size198
Cds size174
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig42117.10795.1prot_H-paniculata_contig42117.10795.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig42117 220..1189 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930281.908145-CDS-H-paniculata_contig42117:219..2861622930281.908145-CDS-H-paniculata_contig42117:219..286Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig42117 220..286 -
1691481223.9158545-CDS-H-paniculata_contig42117:219..2861691481223.9158545-CDS-H-paniculata_contig42117:219..286Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig42117 220..286 -
1622930281.9209177-CDS-H-paniculata_contig42117:1082..11891622930281.9209177-CDS-H-paniculata_contig42117:1082..1189Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig42117 1083..1189 -
1691481223.9287522-CDS-H-paniculata_contig42117:1082..11891691481223.9287522-CDS-H-paniculata_contig42117:1082..1189Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig42117 1083..1189 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930281.9520168-UTR-H-paniculata_contig42117:1189..12131622930281.9520168-UTR-H-paniculata_contig42117:1189..1213Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig42117 1190..1213 -
1691481223.937427-UTR-H-paniculata_contig42117:1189..12131691481223.937427-UTR-H-paniculata_contig42117:1189..1213Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig42117 1190..1213 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig42117.10795.1

>prot_H-paniculata_contig42117.10795.1 ID=prot_H-paniculata_contig42117.10795.1|Name=mRNA_H-paniculata_contig42117.10795.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=58bp
MAAYVCRNGGNFEEMMREREKDNPLLSFIFGGDLHEYYKWSLHCARMGFS
PEQRHAQI
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mRNA from alignment at H-paniculata_contig42117:220..1213-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig42117.10795.1 ID=mRNA_H-paniculata_contig42117.10795.1|Name=mRNA_H-paniculata_contig42117.10795.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=994bp|location=Sequence derived from alignment at H-paniculata_contig42117:220..1213- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGGATGCAGAAAGGGTGGACAAGATGGCTGCCTACGTGTGTCGCAACGG
GGGCAATTTTGAGGAGATGATGCGTGAGCGAGAGAAGGACAATCCTCTCT
TGTCCTTCATTTTTGGAGGGGACCTGCACGAGTGAGTTGTTATTGCCATG
ATCCACAGTGATCGAGTGCTATTTCATTGGGGTTTTTTCATCCCATTAGT
CTCTCAATTGAGTGTGTTGTAATATTTTTATTTAGTCTTATTTTTGGTCA
ATGAGGGAGACGCGTCGGTCTCAAGGCTGGAAGTGGTGTGCCTTGGTTCT
TGGTTGATCGATATTACGGGGCAAGGAAGTGTTTGTCGTAATCCACTCTT
TTTGTTGCATGTCATGGTCCATGGATAATATCAGGGGGAAGTAACCAGAC
GTTGGAGCTATCTACGTCCCCGGCTTTTGACCGCGCACCCCGCTCAATTG
ACGGAGTGATGTGTAGAAAAAATATTACGGTGTTGGTGTTGGTGTTGTTG
AGTTGTCATGATCCATTATTGCTACTGTTGTTATTGGTGGTGGTGGTGGT
GGTGGTGGGGGGGGGTGGGGGGGGGGGGGGGGGTGTTTCTTGTTTTTTTT
TTTTCCGTTGTTTTTTTTGCTGTGGCCGTTGTGGCTGGGGCTCTTCCCGG
TACCGCTCTCCCTGGTTTCGTGCTNNNNNNNNNNTTGTCCGGGGCGGTTA
TTCGATATCGGCGTTGCCTGGCATTTTAGTCCGATAGTACTTGTTCTTGT
TTTTCCCGTTACTTTTATTGCCGTCGCCGTTGCTGCTGCGGCTGCTGCCG
CTACAGCTCTACCCGGTATCGCTGCTGCTACTGTCATACTGCTGGATCCT
TTCCGTCCCCCGCATCCTTCTATGACCGCAACTCGACCGAACCTACCCTA
TCGTGTCGTTTCATGTCGTGCGAATAGGTATTACAAGTGGTCGCTGCACT
GTGCGCGCATGGGCTTCTCGCCCGAGCAGCGGCATGCTCAAATA
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Coding sequence (CDS) from alignment at H-paniculata_contig42117:220..1213-

>mRNA_H-paniculata_contig42117.10795.1 ID=mRNA_H-paniculata_contig42117.10795.1|Name=mRNA_H-paniculata_contig42117.10795.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=348bp|location=Sequence derived from alignment at H-paniculata_contig42117:220..1213- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCTGCCTACGTGTGTCGCAACGGGGGCAATTTTGAGGAGATGATGCG
TGAGCGAGAGAAGGACAATCCTCTCTTGTCCTTCATTTTTGGAGGGGACC
TGCACGAATGGCTGCCTACGTGTGTCGCAACGGGGGCAATTTTGAGGAGA
TGATGCGTGAGCGAGAGAAGGACAATCCTCTCTTGTCCTTCATTTTTGGA
GGGGACCTGCACGAGTATTACAAGTGGTCGCTGCACTGTGCGCGCATGGG
CTTCTCGCCCGAGCAGCGGCATGCTCAAATAGTATTACAAGTGGTCGCTG
CACTGTGCGCGCATGGGCTTCTCGCCCGAGCAGCGGCATGCTCAAATA
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