mRNA_H-paniculata_contig4211.10794.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4211.10794.1
Unique NamemRNA_H-paniculata_contig4211.10794.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig4211.10794.1 vs. uniprot
Match: D7FR96_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FR96_ECTSI)

HSP 1 Score: 239 bits (611), Expect = 1.250e-70
Identity = 115/201 (57.21%), Postives = 135/201 (67.16%), Query Frame = 2 
Query:  449 ASFSVSVKSPQQMEETGAFFGKDSQEGDIALLWGLDSNSRTCDPMVRSSSGEAIVERRFALYRYSWEPSFPRDLGTGKTCFARGFIRARVGDPRLAVTSPSYLLDNTYEASVDDVTIHHMDLYRLRGGLDLHVLDIPSVLETCVCLVEWPDRLGRAMPLNRLDVHLAAVSEDERILTLTGHGDWWAGAVDEFRTDRETKEI 1051
            A+  VSV SP++MEETGAFFG D+  GD+ LLWG                                      DLGTGKTCFARGF+RARVGDP LAVTSPSYLLDNTYE + +D+T+HHMDLYRL+GG DL VL IP V ETCVCLVEWPDRLG   P+NRLDVHL AV+E+ERIL   GHG WW G V++F+  R T+++
Sbjct:   79 ATLEVSVASPEEMEETGAFFGADASGGDVVLLWG--------------------------------------DLGTGKTCFARGFVRARVGDPGLAVTSPSYLLDNTYEVADEDLTLHHMDLYRLQGGTDLRVLGIPGVFETCVCLVEWPDRLGATQPVNRLDVHLTAVNEEERILKFIGHGAWWTGVVEDFQEARRTRKL 241
[Close]
BLAST of mRNA_H-paniculata_contig4211.10794.1 vs. uniprot
Match: A0A835Z1V9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1V9_9STRA)

HSP 1 Score: 169 bits (427), Expect = 4.820e-44
Identity = 94/205 (45.85%), Postives = 114/205 (55.61%), Query Frame = 2 
Query:  401 CTHDSPVGLKLDDVPEASFSVSVKSPQQMEETGAFFGKDSQEGDIALLWGLDSNSRTCDPMVRSSSGEAIVERRFALYRYSWEPSFPRDLGTGKTCFARGFIRARVGDPRLAVTSPSYLLDNTYEASVDDVTIHHMDLYRLRGGLDLHVLDIPSVLETCVCLVEWPDRLGRAMPLNRLDVHLAAVSEDERILTLTGHGDWWAGAV 1015
            CT DS  G   D  P  + S+ ++SP+ ME+ G    + ++ GD+ LL G                                      DLGTGKTCF+RGFIR    DP L VTSPSYLLDNTYEA+ D   +HHMDLYRL G  DLHVL+IP +L T VCLVEWPDRL    P  RL+V ++A S D R + L GHG+WW  AV
Sbjct:   85 CT-DSTTGQ--DQPPTYTSSLMIRSPESMEQLGQLLARGAEAGDVILLIG--------------------------------------DLGTGKTCFSRGFIRECAEDPDLLVTSPSYLLDNTYEAT-DGTMVHHMDLYRLSGADDLHVLNIPEILSTSVCLVEWPDRLQHLTPSVRLEVRISATSGDCRFVELVGHGEWWQEAV 247
[Close]
BLAST of mRNA_H-paniculata_contig4211.10794.1 vs. uniprot
Match: A0A7S2GEU5_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GEU5_9STRA)

HSP 1 Score: 138 bits (348), Expect = 7.720e-34
Identity = 80/203 (39.41%), Postives = 101/203 (49.75%), Query Frame = 2 
Query:  413 SPVGLKLDDVPEASFSVS----VKSPQQMEETGAFFGKDSQEGDIALLWGLDSNSRTCDPMVRSSSGEAIVERRFALYRYSWEPSFPRDLGTGKTCFARGFIRARVGDPRLAVTSPSYLLDNTYEASVDDVTIHHMDLYRLRGGLDLHVLDIPSVLETCVCLVEWPDRLGRAMPLNRLDVHLA--AVSEDERILTLTGHGDWW 1003
            SP+G   +  P + FS      V +P+ ME  GA   + S  GDI  L G                                      DLG GKTCFARGF++ARVGDP L VTSPSYLLD +YE   +D+ IHHMDLYRL G +    LD+ +    C+CL+EWPDRLG  +P  RL+V +       D R++ L   G  W
Sbjct:   29 SPLGFAAN--PSSDFSTGKSCVVNTPEDMERFGATLARGSTAGDIIFLTG--------------------------------------DLGAGKTCFARGFVKARVGDPYLRVTSPSYLLDQSYEVEDEDLIIHHMDLYRLSGTIGTVPLDLETKFRQCICLLEWPDRLGTDIPEERLEVSIRFEGSGSDTRVVFLEPFGSKW 191
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BLAST of mRNA_H-paniculata_contig4211.10794.1 vs. uniprot
Match: A0A7S2EJ05_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EJ05_TRICV)

HSP 1 Score: 128 bits (321), Expect = 2.510e-30
Identity = 76/224 (33.93%), Postives = 100/224 (44.64%), Query Frame = 2 
Query:  452 SFSVSVKSPQQMEETGAFFGKDSQEGDIALLWGLDSNSRTCDPMVRSSSGEAIVERRFALYRYSWEPSFPRDLGTGKTCFARGFIRARVGDPRLAVTSPSYLLDNTYEASVDDVTIHHMDLYRLRGGLDLHVLDIPSVLETCVCLVEWPDRLGRAMPLNRLDVHLAAVSED-----------------------ERILTLTGHGDWWAGAVDEFRTDRETKEIL 1054
            + ++SV +P+ ME+ GA     +  GD+ LL G                                      DLG GKTC +RGF+RAR G   + VTSP+YLL N+Y A     TI+HMDLYRL+GG DL  LD+   L   +CL+EWP RLG ++P  RLD+      ED                        R LTL  HG  W G +     D    ++L
Sbjct:    3 TLTLSVPTPEDMEDVGAVLSVGTSGGDVILLGG--------------------------------------DLGAGKTCLSRGFVRARTGMEGMRVTSPTYLLSNSYPADGGRTTIYHMDLYRLKGGEDLEPLDMAKTLTDGICLIEWPSRLGESLPPARLDITFRIHDEDIDGEDXXXXXXXXXXXXXXXXATARQLTLRAHGPRWEGRLKALEEDGCLDDLL 188
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BLAST of mRNA_H-paniculata_contig4211.10794.1 vs. uniprot
Match: A0A7S4SUD7_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4SUD7_9STRA)

HSP 1 Score: 126 bits (316), Expect = 7.940e-28
Identity = 78/221 (35.29%), Postives = 103/221 (46.61%), Query Frame = 2 
Query:  452 SFSVSVKSPQQMEETGAFFGKDSQEGDIALLWGLDSNSRTCDPMVRSSSGEAIVERRFALYRYSWEPSFPRDLGTGKTCFARGFIRARVGDPRLAVTSPSYLLDNTYEASVDDVTIHHMDLYRLRGGL-DLHVLDIPSVLETCVCLVEWPDRLGRAMPLNRLDVHLA----AVSEDE---------------RILTLTGHGDWWAGAVDEFRTDRETKEIL 1054
            S  +S+ + + ME+ GA     ++ GD  LL G                                      DLG GKTCF+RGF+RAR G   L VTSP+YLL NTYEA   +  IHHMDLYRL G   DL  LD+  VL  C+ L+EWP RLG + P  RL+V +     AV +D                RI+TL  HGD W   +     +   ++++
Sbjct:  186 SLQLSIPTSEDMEDVGAIISMGTKGGDTILLDG--------------------------------------DLGAGKTCFSRGFVRARTGYIDLRVTSPTYLLSNTYEADDGNTIIHHMDLYRLSGNKEDLEPLDMEHVLTKCISLIEWPSRLGDSAPPERLEVTITIDNEAVKDDSEIVDNDXXXXXVIQARIMTLVCHGDQWESRLKFLEEEGYLEDLI 368
[Close]
BLAST of mRNA_H-paniculata_contig4211.10794.1 vs. uniprot
Match: A0A7S2XNM5_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XNM5_9STRA)

HSP 1 Score: 121 bits (304), Expect = 3.540e-27
Identity = 75/208 (36.06%), Postives = 92/208 (44.23%), Query Frame = 2 
Query:  452 SFSVSVKSPQQMEETGAFFGKDSQEGDIALLWGLDSNSRTCDPMVRSSSGEAIVERRFALYRYSWEPSFPRDLGTGKTCFARGFIRARVGDPRLAVTSPSYLLDNTYEASVDDVTIHHMDLYRLRGGLDLHVLDIPSVLETCVCLVEWPDRLGRAMPLNRLDVHLAA--------VSEDERILTLTGHGDWWA---------GAVDEF 1024
            S  + + +P+ ME+ GA     +  GD  LL G                                      DLG GKTC ARGF+RAR G   ++VTSP+YLL NTYEA    + IHHMDLYRL G  DL  L++  VL  C+ L+EWP RLG   P  RLD                  R LTL  HG  W          G +D+F
Sbjct:   87 SLCLDIPTPEDMEDLGAVLSMGTGPGDSILLKG--------------------------------------DLGAGKTCLARGFVRARTGMADISVTSPTYLLSNTYEADDGALLIHHMDLYRLSGDKDLEPLNMNYVLSNCLSLIEWPSRLGSLTPTVRLDATFKIEDLNPNDDFESKRRYLTLDAHGGIWEERLKLLVSEGFIDDF 256
[Close]
BLAST of mRNA_H-paniculata_contig4211.10794.1 vs. uniprot
Match: A0A1V9Z0C4_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z0C4_9STRA)

HSP 1 Score: 117 bits (294), Expect = 9.150e-27
Identity = 69/166 (41.57%), Postives = 92/166 (55.42%), Query Frame = 2 
Query:  527 GDIALLWGLDSNSRTCDPMVRSSSGEAIVERRFALYRYSWEPS---FPRDLGTGKTCFARGFIRARVGDPRLAVTSPSYLLDNTYEASVDDVTIHHMDLYRLRG--GLDLHVLDIPSVLETCVCLVEWPDRLGR-AMPLNRLDVHLA-AVSEDERILTLTGHGDWW 1003
            G  A  WG         P +R  S +A+      +  +   PS      DLG GKTCFARGF+RA   DP + VTSP+YLL NTYE     V ++HMDLYRL     +D   + +    ++C+ L+EWPDRL    MP  RL+VH+A A + DER++ L  +GD W
Sbjct:    6 GRKARAWGGQRWLHASPPPLRLKSAKAMEAFGADMAAHVPHPSTVFLVGDLGCGKTCFARGFVRAWTKDPAMHVTSPTYLLMNTYENEAQRV-LYHMDLYRLDSVSAIDAKAMGLDEAFDSCLNLIEWPDRLKNDLMPATRLEVHIAYATNTDERLVELKTYGDIW 170
[Close]
BLAST of mRNA_H-paniculata_contig4211.10794.1 vs. uniprot
Match: A0A7S2LPC8_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LPC8_9STRA)

HSP 1 Score: 120 bits (300), Expect = 1.390e-26
Identity = 76/203 (37.44%), Postives = 100/203 (49.26%), Query Frame = 2 
Query:  461 VSVKSPQQMEETGAFFGKDSQEGDIALLWGLDSNSRTCDPMVRSSSGEAIVERRFALYRYSWEPSFPRDLGTGKTCFARGFIRARVGDPRLAVTSPSYLLDNTYEASVDDVTIHHMDLYRL--RGGLDLHVLDIPSVLETCVCLVEWPDRLG---RAMPLNRLDVHLAAVSEDERI--LTLTGHGDWW--------AGAVDEF 1024
            V ++SP+ ME  GA   KDS  GD+  L G                                      DLG GKTCF+RGF+R RV  PRL VTSP++LL NTY    D+V +HHMDLYRL      +L  LD+P V+E C+ ++EWP RL      +P NRL++ +  + ED  I    +   G W         AG++DEF
Sbjct:  107 VKIESPEIMESLGAALAKDSVPGDVIFLDG--------------------------------------DLGAGKTCFSRGFVRERVQRPRLRVTSPTFLLSNTYFCPQDEVEVHHMDLYRLFTNSKEELEPLDLPRVMEECISIIEWPSRLACYSDMIPPNRLEL-VFQIDEDTEIRYAQMRPFGYWAERLSMLKDAGSLDEF 270
[Close]
BLAST of mRNA_H-paniculata_contig4211.10794.1 vs. uniprot
Match: A0A7S2FHM7_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FHM7_9STRA)

HSP 1 Score: 113 bits (282), Expect = 7.380e-26
Identity = 57/118 (48.31%), Postives = 73/118 (61.86%), Query Frame = 2 
Query:  683 TCFARGFIRARVGDPRLAVTSPSYLLDNTYEASVD--DVTIHHMDLYRLRGGLDLHVLDIPSVLETCVCLVEWPDRLGRAM-PLNRLDVHLAAVS--EDERILTLTGHGDWWAGAVDE 1021
            T  +RGF+R R GDPRL VTSPSYLLD +YE   D  D  IHHMDLYR+ G  DL  LD+  +L  C+CL+EWPDRL   + P +RL+V +       D R + +  +G+ WA    E
Sbjct:    1 TSLSRGFVRGRTGDPRLRVTSPSYLLDQSYETGEDEADPIIHHMDLYRMAGAADLASLDLEHILTDCICLLEWPDRLSEELVPEDRLEVCIKIEDPRSDMRKVYIAPYGEVWAAKASE 118
[Close]
BLAST of mRNA_H-paniculata_contig4211.10794.1 vs. uniprot
Match: A0A6G0X690_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X690_9STRA)

HSP 1 Score: 110 bits (276), Expect = 2.050e-24
Identity = 61/128 (47.66%), Postives = 78/128 (60.94%), Query Frame = 2 
Query:  665 DLGTGKTCFARGFIRARVGDPRLAVTSPSYLLDNTYEASVDDV--TIHHMDLYRLRG--GLDLHVLDIPSVLETCVCLVEWPDRLGRAMPLNRLDVHLAAV-SEDERILTLTGHGDWWAGAVDEFRTD 1033
            DLG GKTCFARGF+RA   D +L VTSP+YLL NTYE  VD    T++H+DLYRL      D   L +  V  T   +VEWPDRL +  P  RL+VH+    ++DER + + G+G  W    D FR +
Sbjct:   50 DLGCGKTCFARGFVRAWCQDEQLDVTSPTYLLINTYEPPVDTKRSTLYHLDLYRLESVTATDAQALGLEDVFSTGTSIVEWPDRL-QDKPAERLEVHIEYTDAQDERRVRVEGYGSVWKPVEDLFRVN 176
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4211.10794.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FR96_ECTSI1.250e-7057.21Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835Z1V9_9STRA4.820e-4445.85Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2GEU5_9STRA7.720e-3439.41Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2EJ05_TRICV2.510e-3033.93Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7S4SUD7_9STRA7.940e-2835.29Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S2XNM5_9STRA3.540e-2736.06Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A1V9Z0C4_9STRA9.150e-2741.57Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A7S2LPC8_9STRA1.390e-2637.44Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S2FHM7_9STRA7.380e-2648.31Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A6G0X690_9STRA2.050e-2447.66Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4211contigH-paniculata_contig4211:10577..15646 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score241.1
Seed ortholog evalue7.6e-61
Seed eggNOG ortholog2880.D7FR96
KEGG koko:K06925
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Threonylcarbamoyl adenosine biosynthesis protein TsaE
EggNOG OGs2S3MQ@2759,COG0802@1
Ec32 ortholog descriptionP-loop containing nucleoside triphosphate hydrolase
Ec32 orthologEc-26_002340.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03016
Exons6
Model size2151
Cds size1041
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4211.10794.1prot_H-paniculata_contig4211.10794.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4211 10596..13521 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930281.7349691-UTR-H-paniculata_contig4211:10576..105951622930281.7349691-UTR-H-paniculata_contig4211:10576..10595Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4211 10577..10595 +
1691481223.841231-UTR-H-paniculata_contig4211:10576..105951691481223.841231-UTR-H-paniculata_contig4211:10576..10595Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4211 10577..10595 +
1622930281.8543072-UTR-H-paniculata_contig4211:13521..143641622930281.8543072-UTR-H-paniculata_contig4211:13521..14364Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4211 13522..14364 +
1691481223.8999357-UTR-H-paniculata_contig4211:13521..143641691481223.8999357-UTR-H-paniculata_contig4211:13521..14364Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4211 13522..14364 +
1622930281.86822-UTR-H-paniculata_contig4211:15398..156461622930281.86822-UTR-H-paniculata_contig4211:15398..15646Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4211 15399..15646 +
1691481223.9074366-UTR-H-paniculata_contig4211:15398..156461691481223.9074366-UTR-H-paniculata_contig4211:15398..15646Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4211 15399..15646 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930281.7556963-CDS-H-paniculata_contig4211:10595..111251622930281.7556963-CDS-H-paniculata_contig4211:10595..11125Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4211 10596..11125 +
1691481223.8540154-CDS-H-paniculata_contig4211:10595..111251691481223.8540154-CDS-H-paniculata_contig4211:10595..11125Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4211 10596..11125 +
1622930281.768931-CDS-H-paniculata_contig4211:11903..120171622930281.768931-CDS-H-paniculata_contig4211:11903..12017Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4211 11904..12017 +
1691481223.8632455-CDS-H-paniculata_contig4211:11903..120171691481223.8632455-CDS-H-paniculata_contig4211:11903..12017Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4211 11904..12017 +
1622930281.7867742-CDS-H-paniculata_contig4211:12504..126361622930281.7867742-CDS-H-paniculata_contig4211:12504..12636Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4211 12505..12636 +
1691481223.8710778-CDS-H-paniculata_contig4211:12504..126361691481223.8710778-CDS-H-paniculata_contig4211:12504..12636Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4211 12505..12636 +
1622930281.807595-CDS-H-paniculata_contig4211:12923..130631622930281.807595-CDS-H-paniculata_contig4211:12923..13063Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4211 12924..13063 +
1691481223.8784952-CDS-H-paniculata_contig4211:12923..130631691481223.8784952-CDS-H-paniculata_contig4211:12923..13063Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4211 12924..13063 +
1622930281.8308887-CDS-H-paniculata_contig4211:13396..135211622930281.8308887-CDS-H-paniculata_contig4211:13396..13521Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4211 13397..13521 +
1691481223.8905573-CDS-H-paniculata_contig4211:13396..135211691481223.8905573-CDS-H-paniculata_contig4211:13396..13521Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4211 13397..13521 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4211.10794.1

>prot_H-paniculata_contig4211.10794.1 ID=prot_H-paniculata_contig4211.10794.1|Name=mRNA_H-paniculata_contig4211.10794.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=347bp
MVNNVTVHYKKCRTISTRYRPSQQTTKTQLHGTLLTAPHAATRAKYITSC
LALFAMKFGSYAWVVNRSGGLISLLAGQKDYVRQQQSIMLSCGSNSVRLW
SSTPWASSRQAVIPAWRCVAQQDGDDICTHDSPVGLKLDDVPEASFSVSV
KSPQQMEETGAFFGKDSQEGDIALLWGLDSNSRTCDPMVRSSSGEAIVER
RFALYRYSWEPSFPRDLGTGKTCFARGFIRARVGDPRLAVTSPSYLLDNT
YEASVDDVTIHHMDLYRLRGGLDLHVLDIPSVLETCVCLVEWPDRLGRAM
PLNRLDVHLAAVSEDERILTLTGHGDWWAGAVDEFRTDRETKEILP*
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mRNA from alignment at H-paniculata_contig4211:10577..15646+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4211.10794.1 ID=mRNA_H-paniculata_contig4211.10794.1|Name=mRNA_H-paniculata_contig4211.10794.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5070bp|location=Sequence derived from alignment at H-paniculata_contig4211:10577..15646+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAATAACAAATACAGAAATATGGTAAATAACGTGACAGTACACTACAAGA
AGTGCAGGACGATATCGACACGCTACCGTCCAAGCCAGCAGACAACGAAG
ACGCAACTCCACGGCACACTCTTGACAGCCCCACACGCCGCCACCAGAGC
AAAATACATCACATCGTGTTTAGCCTTATTCGCGATGAAGTTTGGGTCGT
ATGCTTGGGTGGTCAATCGCTCGGGAGGGCTTATTTCGCTGCTGGCTGGA
CAAAAAGACTATGTACGGCAGCAGCAATCGATCATGCTATCATGTGGTTC
AAACTCTGTGCGATTATGGTCAAGCACACCTTGGGCGAGTTCGCGACAAG
CAGTTATCCCAGCATGGCGATGCGTTGCACAACAAGACGGAGATGACATA
TGTACGCATGATTCACCGGTGGGTTTGAAACTTGATGATGTTCCGGAAGC
CAGCTTCTCGGTGAGCGTGAAATCTCCGCAACAGATGGAAGAAACTGGGG
CTTTCTTCGGGAAAGATTCCCAAGAAGGGGACATTGCGCTCTTATGGGGG
TAAGTTAGTCTCCTGAGAATGTCATTGCTGCGCTAGGTTAGCTGCTTTCT
TTCTCATCAATTTCGTCCATTGATTTCCCCGTCGCAATTTGCATTACGTG
CAACGTTGTGGTTTGATTGTTTTGTATATGTTCATACTGCATCTCAAGAA
GCGGCCAACCACTTGGCGCGATAAAGCCGACGGACTAGGAATGGGACCAT
GTCTGAAGCAGCGTGTTACTACCTTCAATTATTACGTTGACCCTCCACTT
TGACTTCTTAGTATATATGCACAGTGAACGCCACCGAGGTTGGACTGTAA
ATGTACAAGTCCAACTTACTCTATTTTGCACTGACCCAATGATCACAAAT
TCTTTGATCGAGTTGGGCTCAAAACGATAATGTATAGGTCGAAAATGTCA
GTCTAATTTGCTAGATATAATCGTATGTGGCCACTAGTTAAGCACAAATC
TTCAGGGAAAATTGTGAAGAGAGTGTTTGATGGAAACTATCCCTTTCTAG
CTCTATAGGGCATTCTCTTTATCACCCTCACCCCGCTCATGAGCTATGAG
ACTCTTCTTTTTGCAAGAGGCTTCTAGGGTTAAGCGGTTTCGACCAGCTG
GCGTTGAGGAATCCTCTCTTCGTCTTCACAAGTGACTTGCCTCTTTATTG
AGAGGTAATAAGTCATTTTTGCATATCTGGGTGTGTGGGTGCCCATCTCA
ACAGTGCTTCAGACAAGGTTCCTTCCCACCATTGTTGCGGCCTTGTGTGA
CTCGTGAAATTGTTTTTGGTGGCTGAGGTTGGATTCAAACTCACGAACTT
GTGATCCCATGGTCAGAAGCTCTTCCGGCGAGGCCATTGTGGAAAGACGG
TTTGCCCTCTACAGATACTCTTGGGAACCATCCTTTCCTAGGTATGTTCT
CCACAATTTCTTGAATTATAAAAATATTTGGCGCTCAATTTCTTGATTGG
CTGATCTCTTGTCATGGGGTCGGTGCTATATGCGCCAGTTCCTCCCCCTT
TTCATGGGGTGCCGGCACCTCATCACCACACGAGAGACCGCCTAATTCCA
CACCCACGAAGACAAGATAGTGAAAACGACGAAATAAATGGTGACCTTTC
ATTCTCCACAACGTCAAAATCCAAATCTCCACCGTACGCTTTAGTGCCGA
GAGGGTCTACAGCGAGGGGCCCAACGCCCTTCTGTAGATACCACGAGGTT
CTTGCGCTTGCTCGATGTCGGGGTGTACGCGTGCACAATGCATCGCGGTA
TATGGCTTCCAGTATCAACGTCATACTTTTGATATATGTCGACCACAAGA
TCGGCAGACGTGTGCTGTTCATTGTGAATGATATTTCACCACAGCATCGG
GCGCTATTTCCTCCCTCCGCCCACACAGGGATCTTGGCACAGGAAAAACG
TGCTTTGCTAGAGGATTTATTCGAGCCCGGGTCGGTGACCCTCGCCTTGC
TGTTACTTCGCCGTCTTATCTACTGGACAACACATATGAAGCTAGCGTGG
ACGACGTCACGTGAGTTACCGCTCGATAAAAGCTTCGAACCTAGCCATTC
TAACCTGTGTCACTCTGCGTTCAAGTTATGATGAACAGCAGTAGTTGGCA
GCTAGTGATGGTCAGATAAAGAAGCTTACTTGTCCCTGGGAATATTCCAA
GTTACATGTACACTGTCAGTCCTTCCCCGCCCAAAGTATCCCTCGTATAG
CAGCCTACGGCGCATTCACTACCTCTTGAATCATTTATCTAATAACACTC
GCTGATTTGATTGAACGATCGCCCACACATTCTCGATGATTTGCCAGAAT
TCACCATATGGATCTATATCGCCTACGAGGAGGCCTTGATCTTCACGTGC
TCGATATACCGAGTGTACTGGAGACGTGTGTATGTCTGGTTGAATGGCCT
GACCGGCTAGGACGGGCAATGCCCTTGAACAGGCTAGGTAAGGGGAGCAG
GTTCAATTCTAGAGAAACGCAGTACGTTAATCTCGCCAGGCCAAAAGTAT
AGCCTGAGCGCGTATTCGCTAGACGCTCGGATAGATCAATTGGAATAGTG
CTTGATAGTAAAATTATGTCCCCTACCTCGGGATTGGATGGAATAGTCAC
AGCCATGAACCTGCGCAGACTCATGAATTAATTTTTCAAATAGAGTAAAA
AATATAGAGTTTACGATACTGTCTGATGTTGTCACACGACTGAGTCAACT
GTATTCCAATATTACTTGGATATTTGCAGCGAACGAACCCTTTGTTTTCT
TATCCATCTTCAATTCGCAGATGTCCACCTTGCTGCTGTAAGTGAGGACG
AGCGAATATTAACGCTTACTGGGCATGGCGATTGGTGGGCAGGAGCAGTG
GATGAGTTTAGGACCGACCGAGAGACAAAGGAAATATTGCCGTAGTGTGT
GTTCGGCGGCGACACCTGGTTAGATACTGTGAAGGCATCGCGGAACATAT
TTTGTCTTGATTAAGGTGGTGCTCCATAATGCGGCATCGTAAATGCGAGT
GTGTTGTGCTGTTTTACCTCCACATGCTTAGCGTTCTGTCGAGAACGAGT
TCGTACTTGTGTATCATTTTTTGTCCTCACTCCCAATGTCGAACGCAGTT
ATCCAGCGAGTGCAATCGTCGCAACATTTTTGCTCGTGCTCGTGGAGCCC
GTCCTGCACTGTTTTACGTAGCTCCTTGCTATTGTCTGACACAACACGGC
TGTTGTCAGACATACGTTGCGCAGATATATCGCTGATCGTCGTTGATTCC
AGCTGTTCGTTTACCGCGTTCAATGAACTCGACAAGAATTCACGATGCCT
TGTCGCAGAGGACGAATTCTTCCCGCCGACCACCGTTTCTTCGCCATCGG
AATTCCTCTTGCGTTGAGAAACTTGACGGGGCTTGTTCATATTGGCAGTC
TTCACTTTATAAGCATGCGTGGATGCCCGTCCCATGTATTCAACGAGGAT
TTGCGGTTGTTCGTAGGGGCTTTTTTTGGCTTCCATATTGGTGTTCCTCA
TGAACGCGTTTGGGGTCAGCTGATGGAGTGGCACTCCAATGCTGTTGAGC
TTTTGATGCGAAGCAATCATGTGCAAAAGAGGGTGGGCTTTCGTTCCTTG
CTTTTCTGCGGCAAGGTCGCGGAAAAATTCATTTTCACGATCGCGAATAA
TGTCTTTTTGAGTGGTGCTAAGTCGACCGTCATCCATTGAAGTTACGCTG
GCGGAGATCCCTTCACATCCAACCGTAATATCTTGTTGCCTGCGCAGAAC
CACGTGAAAAAATCGAAAAATCCGAGGGAAAACTCGCGCGATGAAATTTT
ATCGGGGTGTGAGATGGCTGAAGACCCGATCCCCATATCGACTGATTTGC
GTTCAAATGAAATCTGGCTTCTTACATAGACCTACTGTTCATGAACCATA
CGCCAATCATCGCTGTCCGCCGCATGCATCGATATATATATATATATATA
TATATTCAACCCCCCGGAAGGCTAAGGCAAAAACCTCTATCCGATGCTTC
CATACCGAAGTATGTCTAAATTTCCTGTAACAAAGCAGAGTTATTTGTTC
CTCTGCGGGGTAGGCGCCACCCCGGTTCGGCTGAACGAGGTAGGCAGTGT
GAGTATTACACCCAGCATCGACATATATATTATTCATGCATGCTAAATGA
GGCAAAATTTCGGTGTAGATACACGAAGTACTCTCCAACACGCAAAACGT
ATGTATCTTGAAACGCACGCTTTTGTGATACCACCTCCTGGTGCGCACGA
GGACCACAAGTTTGGGTCAACTAAACTCGCAGTATCACATCAGTTATGGT
CATGCATACCTGCGGATTGGTTCTGGGACTTCTGGCGACACGTTGTGAGG
AACTCTACATCTAATCCTGGTGCGGTCACATGTTTTTGAATTCGTTCCCA
TCTTGAGAGGCTGCCAAGCATCTTCTGACAGCTTCAATCGACCCAGGGTG
TACGAACGATGTGTGGCGCTGAACTGCGTCGACAGTGTGTGATTAGTTAG
AGCCTGTCGGCCAGTTGCCCTGAAGGCCAGGGAAGCCAACTCTGCGTATA
CCAGGAAACAGCTCTCACAGACGAGAGCCGTCTGGGTTGTGACGGGAAAG
CGGCGATGGGTCGGTCAGACCCTGTGTTCTGATGGCGGGATTGGAATTCT
GAATGCAACTACCCCCTGTCGTGCGACCTTGCGCACAAGCTTTTGATGGC
CAGCTGATACTTTGCTGCGACGGTGTTGGTCTGCAGCTAGGCGATGGCCC
CCAAAATAAATGTCGACTCGTACCTTGTACATAAACAGCGGATCGCGTCG
ATGGCGGGCATATCCCTCGGCAGCTAATTTCGGGTGCAATGTGCGGATGA
CAGGCGGTACCATCACATCTTCTGCTGCTATACTTGACGGGTCGGCCCAT
TTCTCTTTCTGAATATTTCCGAAGCCAACACCACCAGCTGCTTCCAAAAC
TTCCGAGCACGGAGGCCATTCCACCACACCCGAGCAATGTGCTGGGTCAC
AGGAAACAAGATCGATTACC
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Coding sequence (CDS) from alignment at H-paniculata_contig4211:10577..15646+

>mRNA_H-paniculata_contig4211.10794.1 ID=mRNA_H-paniculata_contig4211.10794.1|Name=mRNA_H-paniculata_contig4211.10794.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2082bp|location=Sequence derived from alignment at H-paniculata_contig4211:10577..15646+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTAAATAACGTGACAGTACACTACAAGAAGTGCAGGACGATATCGAC
ACGCTACCGTCCAAGCCAGCAGACAACGAAGACGCAACTCCACGGCACAC
TCTTGACAGCCCCACACGCCGCCACCAGAGCAAAATACATCACATCGTGT
TTAGCCTTATTCGCGATGAAGTTTGGGTCGTATGCTTGGGTGGTCAATCG
CTCGGGAGGGCTTATTTCGCTGCTGGCTGGACAAAAAGACTATGTACGGC
AGCAGCAATCGATCATGCTATCATGTGGTTCAAACTCTGTGCGATTATGG
TCAAGCACACCTTGGGCGAGTTCGCGACAAGCAGTTATCCCAGCATGGCG
ATGCGTTGCACAACAAGACGGAGATGACATATGTACGCATGATTCACCGG
TGGGTTTGAAACTTGATGATGTTCCGGAAGCCAGCTTCTCGGTGAGCGTG
AAATCTCCGCAACAGATGGAAGAAACTGGGGCTTTCTTCGGGAAAGATTC
CCAAGAAGGGGACATTGCGCTCTTATGGGGATGGTAAATAACGTGACAGT
ACACTACAAGAAGTGCAGGACGATATCGACACGCTACCGTCCAAGCCAGC
AGACAACGAAGACGCAACTCCACGGCACACTCTTGACAGCCCCACACGCC
GCCACCAGAGCAAAATACATCACATCGTGTTTAGCCTTATTCGCGATGAA
GTTTGGGTCGTATGCTTGGGTGGTCAATCGCTCGGGAGGGCTTATTTCGC
TGCTGGCTGGACAAAAAGACTATGTACGGCAGCAGCAATCGATCATGCTA
TCATGTGGTTCAAACTCTGTGCGATTATGGTCAAGCACACCTTGGGCGAG
TTCGCGACAAGCAGTTATCCCAGCATGGCGATGCGTTGCACAACAAGACG
GAGATGACATATGTACGCATGATTCACCGGTGGGTTTGAAACTTGATGAT
GTTCCGGAAGCCAGCTTCTCGGTGAGCGTGAAATCTCCGCAACAGATGGA
AGAAACTGGGGCTTTCTTCGGGAAAGATTCCCAAGAAGGGGACATTGCGC
TCTTATGGGGGTTGGATTCAAACTCACGAACTTGTGATCCCATGGTCAGA
AGCTCTTCCGGCGAGGCCATTGTGGAAAGACGGTTTGCCCTCTACAGATA
CTCTTGGGAACCATCCTTTCCTAGGTTGGATTCAAACTCACGAACTTGTG
ATCCCATGGTCAGAAGCTCTTCCGGCGAGGCCATTGTGGAAAGACGGTTT
GCCCTCTACAGATACTCTTGGGAACCATCCTTTCCTAGGGATCTTGGCAC
AGGAAAAACGTGCTTTGCTAGAGGATTTATTCGAGCCCGGGTCGGTGACC
CTCGCCTTGCTGTTACTTCGCCGTCTTATCTACTGGACAACACATATGAA
GCTAGCGTGGACGACGTCACGGATCTTGGCACAGGAAAAACGTGCTTTGC
TAGAGGATTTATTCGAGCCCGGGTCGGTGACCCTCGCCTTGCTGTTACTT
CGCCGTCTTATCTACTGGACAACACATATGAAGCTAGCGTGGACGACGTC
ACAATTCACCATATGGATCTATATCGCCTACGAGGAGGCCTTGATCTTCA
CGTGCTCGATATACCGAGTGTACTGGAGACGTGTGTATGTCTGGTTGAAT
GGCCTGACCGGCTAGGACGGGCAATGCCCTTGAACAGGCTAGAATTCACC
ATATGGATCTATATCGCCTACGAGGAGGCCTTGATCTTCACGTGCTCGAT
ATACCGAGTGTACTGGAGACGTGTGTATGTCTGGTTGAATGGCCTGACCG
GCTAGGACGGGCAATGCCCTTGAACAGGCTAGATGTCCACCTTGCTGCTG
TAAGTGAGGACGAGCGAATATTAACGCTTACTGGGCATGGCGATTGGTGG
GCAGGAGCAGTGGATGAGTTTAGGACCGACCGAGAGACAAAGGAAATATT
GCCGTAGATGTCCACCTTGCTGCTGTAAGTGAGGACGAGCGAATATTAAC
GCTTACTGGGCATGGCGATTGGTGGGCAGGAGCAGTGGATGAGTTTAGGA
CCGACCGAGAGACAAAGGAAATATTGCCGTAG
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