mRNA_H-paniculata_contig42106.10792.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
|
Overview
Homology
BLAST of mRNA_H-paniculata_contig42106.10792.1 vs. uniprot
Match: A0A151T9B6_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151T9B6_CAJCA) HSP 1 Score: 60.5 bits (145), Expect = 8.680e-9 Identity = 27/83 (32.53%), Postives = 48/83 (57.83%), Query Frame = 1
Query: 1 WQRAEEVEMQGLIDNGVWTQVERRKNKLVVSTMMLYRRKIGEDGKVEKYKYRLVAHGNRQITGIHFQEASSPAPAVASTKMIV 249
W+ A ++E++ + NG W ++R K VV +Y+ K+ E GKV+K+K RLV G Q GI + E +P + + ++++
Sbjct: 801 WRNAMDIEIEAIEKNGTWELIDRPKGAKVVGVKWVYKTKLNEKGKVDKFKARLVVKGYAQQYGIDYTEVFAPVACMETVRLVI 883
BLAST of mRNA_H-paniculata_contig42106.10792.1 vs. uniprot
Match: A0A2C5X5E6_9PEZI (Copia protein n=1 Tax=Ceratocystis fimbriata CBS 114723 TaxID=1035309 RepID=A0A2C5X5E6_9PEZI) HSP 1 Score: 58.2 bits (139), Expect = 9.770e-9 Identity = 30/83 (36.14%), Postives = 49/83 (59.04%), Query Frame = 1
Query: 1 WQRAEEVEMQGLIDNGVWTQVERRKNKLVVSTMMLYRRKIGEDGKVEKYKYRLVAHGNRQITGIHFQEASSPAPAVASTKMIV 249
W+RA E E+ L + G W V + + + + T ++ +K DGK+EKYK RLV G RQ G++F E+ +P P A+ ++ +
Sbjct: 24 WRRAIERELNTLTEFGTWRFVPKPEGCVPIDTRFVFAKKYDLDGKLEKYKARLVVRGFRQEYGVNFFESFAPTPGSATLRLFL 106
BLAST of mRNA_H-paniculata_contig42106.10792.1 vs. uniprot
Match: UPI00092E9081 (uncharacterized protein LOC109363584 n=1 Tax=Lupinus angustifolius TaxID=3871 RepID=UPI00092E9081) HSP 1 Score: 56.6 bits (135), Expect = 2.510e-8 Identity = 30/60 (50.00%), Postives = 38/60 (63.33%), Query Frame = 1
Query: 1 WQRAEEVEMQGLIDNGVWTQVERRKNKLVVSTMMLYRRKIGEDGKVEKYKYRLVAHGNRQ 180
WQ A + EM+ + N VWT VE K+ + M +Y++KIGEDGKVE YK LV G RQ
Sbjct: 65 WQEAIKSEMESMKTNKVWTLVEASKDIKPIGCMWVYKKKIGEDGKVETYKAHLVDKGYRQ 124
BLAST of mRNA_H-paniculata_contig42106.10792.1 vs. uniprot
Match: UPI00090104FD (uncharacterized protein LOC104779870 isoform X1 n=1 Tax=Camelina sativa TaxID=90675 RepID=UPI00090104FD) HSP 1 Score: 57.8 bits (138), Expect = 7.520e-8 Identity = 30/83 (36.14%), Postives = 45/83 (54.22%), Query Frame = 1
Query: 1 WQRAEEVEMQGLIDNGVWTQVERRKNKLVVSTMMLYRRKIGEDGKVEKYKYRLVAHGNRQITGIHFQEASSPAPAVASTKMIV 249
W A E LI G W V R KN ++ +M LY+ K +G++ +YK RLVA+GN Q+ G+ E SP A+ + ++
Sbjct: 420 WNPAMGEEYSTLIKMGTWCLVPRPKNTNIIRSMWLYKHKFDSNGRLSRYKARLVANGNSQLPGVDCDETFSPVVKPATIRAVL 502
BLAST of mRNA_H-paniculata_contig42106.10792.1 vs. uniprot
Match: A0A151T5R4_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Cajanus cajan TaxID=3821 RepID=A0A151T5R4_CAJCA) HSP 1 Score: 57.4 bits (137), Expect = 1.070e-7 Identity = 30/83 (36.14%), Postives = 47/83 (56.63%), Query Frame = 1
Query: 1 WQRAEEVEMQGLIDNGVWTQVERRKNKLVVSTMMLYRRKIGEDGKVEKYKYRLVAHGNRQITGIHFQEASSPAPAVASTKMIV 249
W+ A EM L +N W V+ K K VV ++ K+G DGK+++YK RLVA G Q GI ++E +P + S ++++
Sbjct: 864 WRAAVLEEMAALEENKTWDIVKLPKEKKVVGCRWIFTTKMGADGKIDRYKARLVAQGYTQTHGIDYEETFAPVAKLNSIRILI 946
BLAST of mRNA_H-paniculata_contig42106.10792.1 vs. uniprot
Match: A0A1X7VXK3_AMPQE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7VXK3_AMPQE) HSP 1 Score: 55.8 bits (133), Expect = 1.210e-7 Identity = 31/68 (45.59%), Postives = 41/68 (60.29%), Query Frame = 1
Query: 1 WQRAEEVEMQGLIDNGVWTQVERRKNKLVVSTMMLYRRKIGEDGKVEKYKYRLVAHGNRQITGIHFQE 204
W+ A E EM+ L N V+ VE KNK V+ + ++RRKI DG VE+YK RLVA Q G+ + E
Sbjct: 21 WKEAMEREMESLKANDVYDLVELPKNKEVIGSKWIFRRKINADGSVERYKARLVAQRFSQTHGLDYDE 88
BLAST of mRNA_H-paniculata_contig42106.10792.1 vs. uniprot
Match: A0A182HAC3_AEDAL (Integrase catalytic domain-containing protein n=1 Tax=Aedes albopictus TaxID=7160 RepID=A0A182HAC3_AEDAL) HSP 1 Score: 56.6 bits (135), Expect = 1.970e-7 Identity = 26/83 (31.33%), Postives = 50/83 (60.24%), Query Frame = 1
Query: 1 WQRAEEVEMQGLIDNGVWTQVERRKNKLVVSTMMLYRRKIGEDGKVEKYKYRLVAHGNRQITGIHFQEASSPAPAVASTKMIV 249
W +A E Q LIDN W V+ ++ ++ + +++RK+ DGKV+++K RLVA G Q G+ F ++ +P ++ ++++
Sbjct: 365 WIKAMSEEYQSLIDNDTWELVDPPTDRNIIGSRWVFKRKLNADGKVDRFKARLVAQGFAQRVGVDFDDSFAPVAMHSTFRLLL 447
BLAST of mRNA_H-paniculata_contig42106.10792.1 vs. uniprot
Match: A0A2U1PSN3_ARTAN (Ribonuclease H-like domain-containing protein n=1 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1PSN3_ARTAN) HSP 1 Score: 56.6 bits (135), Expect = 1.980e-7 Identity = 31/72 (43.06%), Postives = 40/72 (55.56%), Query Frame = 1
Query: 1 WQRAEEVEMQGLIDNGVWTQVERRKNKLVVSTMMLYRRKIGEDGKVEKYKYRLVAHGNRQITGIHFQEASSP 216
W RA E LI N W V R + +V +M L+R K +G + +YK RLVA+GN Q+TGI E SP
Sbjct: 608 WYRAMIDEYNALIKNNTWILVPRPPDANIVLSMWLFRHKHNANGSLNRYKARLVANGNTQVTGIDVDETFSP 679
BLAST of mRNA_H-paniculata_contig42106.10792.1 vs. uniprot
Match: A0A2I0HGX5_PUNGR (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=2 Tax=Punica granatum TaxID=22663 RepID=A0A2I0HGX5_PUNGR) HSP 1 Score: 52.8 bits (125), Expect = 2.190e-7 Identity = 26/65 (40.00%), Postives = 41/65 (63.08%), Query Frame = 1
Query: 22 EMQGLIDNGVWTQVERRKNKLVVSTMMLYRRKIGEDGKVEKYKYRLVAHGNRQITGIHFQEASSP 216
E+ + +N VW V+ + +++ ++++RKIG DGKVE YK RLVA G RQ + ++E SP
Sbjct: 4 EIDSMRENQVWDLVDLPEGIVLIGNELVFKRKIGADGKVETYKARLVAKGYRQRQEVDYEETFSP 68
BLAST of mRNA_H-paniculata_contig42106.10792.1 vs. uniprot
Match: A0A6G0WAE5_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=4 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WAE5_9STRA) HSP 1 Score: 55.5 bits (132), Expect = 4.720e-7 Identity = 28/83 (33.73%), Postives = 48/83 (57.83%), Query Frame = 1
Query: 1 WQRAEEVEMQGLIDNGVWTQVERRKNKLVVSTMMLYRRKIGEDGKVEKYKYRLVAHGNRQITGIHFQEASSPAPAVASTKMIV 249
W++AE + G+IDN + + N+ + +Y +KI +GKV ++K RLVA+G Q G+ F E+ SP + + +MI+
Sbjct: 9 WEQAEMTALDGIIDNNTFKVIPPGPNERSIKCHWVYNKKIDSEGKVTRFKARLVANGYLQQHGVDFFESYSPVVKIVTLRMIL 91 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig42106.10792.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig42106.10792.1 >prot_H-paniculata_contig42106.10792.1 ID=prot_H-paniculata_contig42106.10792.1|Name=mRNA_H-paniculata_contig42106.10792.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=75bp MQGLIDNGVWTQVERRKNKLVVSTMMLYRRKIGEDGKVEKYKYRLVAHGNback to top mRNA from alignment at H-paniculata_contig42106:579..827- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig42106.10792.1 ID=mRNA_H-paniculata_contig42106.10792.1|Name=mRNA_H-paniculata_contig42106.10792.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=249bp|location=Sequence derived from alignment at H-paniculata_contig42106:579..827- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig42106:579..827- >mRNA_H-paniculata_contig42106.10792.1 ID=mRNA_H-paniculata_contig42106.10792.1|Name=mRNA_H-paniculata_contig42106.10792.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=450bp|location=Sequence derived from alignment at H-paniculata_contig42106:579..827- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |