mRNA_H-paniculata_contig42106.10792.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig42106.10792.1
Unique NamemRNA_H-paniculata_contig42106.10792.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig42106.10792.1 vs. uniprot
Match: A0A151T9B6_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151T9B6_CAJCA)

HSP 1 Score: 60.5 bits (145), Expect = 8.680e-9
Identity = 27/83 (32.53%), Postives = 48/83 (57.83%), Query Frame = 1
Query:    1 WQRAEEVEMQGLIDNGVWTQVERRKNKLVVSTMMLYRRKIGEDGKVEKYKYRLVAHGNRQITGIHFQEASSPAPAVASTKMIV 249
            W+ A ++E++ +  NG W  ++R K   VV    +Y+ K+ E GKV+K+K RLV  G  Q  GI + E  +P   + + ++++
Sbjct:  801 WRNAMDIEIEAIEKNGTWELIDRPKGAKVVGVKWVYKTKLNEKGKVDKFKARLVVKGYAQQYGIDYTEVFAPVACMETVRLVI 883          
BLAST of mRNA_H-paniculata_contig42106.10792.1 vs. uniprot
Match: A0A2C5X5E6_9PEZI (Copia protein n=1 Tax=Ceratocystis fimbriata CBS 114723 TaxID=1035309 RepID=A0A2C5X5E6_9PEZI)

HSP 1 Score: 58.2 bits (139), Expect = 9.770e-9
Identity = 30/83 (36.14%), Postives = 49/83 (59.04%), Query Frame = 1
Query:    1 WQRAEEVEMQGLIDNGVWTQVERRKNKLVVSTMMLYRRKIGEDGKVEKYKYRLVAHGNRQITGIHFQEASSPAPAVASTKMIV 249
            W+RA E E+  L + G W  V + +  + + T  ++ +K   DGK+EKYK RLV  G RQ  G++F E+ +P P  A+ ++ +
Sbjct:   24 WRRAIERELNTLTEFGTWRFVPKPEGCVPIDTRFVFAKKYDLDGKLEKYKARLVVRGFRQEYGVNFFESFAPTPGSATLRLFL 106          
BLAST of mRNA_H-paniculata_contig42106.10792.1 vs. uniprot
Match: UPI00092E9081 (uncharacterized protein LOC109363584 n=1 Tax=Lupinus angustifolius TaxID=3871 RepID=UPI00092E9081)

HSP 1 Score: 56.6 bits (135), Expect = 2.510e-8
Identity = 30/60 (50.00%), Postives = 38/60 (63.33%), Query Frame = 1
Query:    1 WQRAEEVEMQGLIDNGVWTQVERRKNKLVVSTMMLYRRKIGEDGKVEKYKYRLVAHGNRQ 180
            WQ A + EM+ +  N VWT VE  K+   +  M +Y++KIGEDGKVE YK  LV  G RQ
Sbjct:   65 WQEAIKSEMESMKTNKVWTLVEASKDIKPIGCMWVYKKKIGEDGKVETYKAHLVDKGYRQ 124          
BLAST of mRNA_H-paniculata_contig42106.10792.1 vs. uniprot
Match: UPI00090104FD (uncharacterized protein LOC104779870 isoform X1 n=1 Tax=Camelina sativa TaxID=90675 RepID=UPI00090104FD)

HSP 1 Score: 57.8 bits (138), Expect = 7.520e-8
Identity = 30/83 (36.14%), Postives = 45/83 (54.22%), Query Frame = 1
Query:    1 WQRAEEVEMQGLIDNGVWTQVERRKNKLVVSTMMLYRRKIGEDGKVEKYKYRLVAHGNRQITGIHFQEASSPAPAVASTKMIV 249
            W  A   E   LI  G W  V R KN  ++ +M LY+ K   +G++ +YK RLVA+GN Q+ G+   E  SP    A+ + ++
Sbjct:  420 WNPAMGEEYSTLIKMGTWCLVPRPKNTNIIRSMWLYKHKFDSNGRLSRYKARLVANGNSQLPGVDCDETFSPVVKPATIRAVL 502          
BLAST of mRNA_H-paniculata_contig42106.10792.1 vs. uniprot
Match: A0A151T5R4_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Cajanus cajan TaxID=3821 RepID=A0A151T5R4_CAJCA)

HSP 1 Score: 57.4 bits (137), Expect = 1.070e-7
Identity = 30/83 (36.14%), Postives = 47/83 (56.63%), Query Frame = 1
Query:    1 WQRAEEVEMQGLIDNGVWTQVERRKNKLVVSTMMLYRRKIGEDGKVEKYKYRLVAHGNRQITGIHFQEASSPAPAVASTKMIV 249
            W+ A   EM  L +N  W  V+  K K VV    ++  K+G DGK+++YK RLVA G  Q  GI ++E  +P   + S ++++
Sbjct:  864 WRAAVLEEMAALEENKTWDIVKLPKEKKVVGCRWIFTTKMGADGKIDRYKARLVAQGYTQTHGIDYEETFAPVAKLNSIRILI 946          
BLAST of mRNA_H-paniculata_contig42106.10792.1 vs. uniprot
Match: A0A1X7VXK3_AMPQE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7VXK3_AMPQE)

HSP 1 Score: 55.8 bits (133), Expect = 1.210e-7
Identity = 31/68 (45.59%), Postives = 41/68 (60.29%), Query Frame = 1
Query:    1 WQRAEEVEMQGLIDNGVWTQVERRKNKLVVSTMMLYRRKIGEDGKVEKYKYRLVAHGNRQITGIHFQE 204
            W+ A E EM+ L  N V+  VE  KNK V+ +  ++RRKI  DG VE+YK RLVA    Q  G+ + E
Sbjct:   21 WKEAMEREMESLKANDVYDLVELPKNKEVIGSKWIFRRKINADGSVERYKARLVAQRFSQTHGLDYDE 88          
BLAST of mRNA_H-paniculata_contig42106.10792.1 vs. uniprot
Match: A0A182HAC3_AEDAL (Integrase catalytic domain-containing protein n=1 Tax=Aedes albopictus TaxID=7160 RepID=A0A182HAC3_AEDAL)

HSP 1 Score: 56.6 bits (135), Expect = 1.970e-7
Identity = 26/83 (31.33%), Postives = 50/83 (60.24%), Query Frame = 1
Query:    1 WQRAEEVEMQGLIDNGVWTQVERRKNKLVVSTMMLYRRKIGEDGKVEKYKYRLVAHGNRQITGIHFQEASSPAPAVASTKMIV 249
            W +A   E Q LIDN  W  V+   ++ ++ +  +++RK+  DGKV+++K RLVA G  Q  G+ F ++ +P    ++ ++++
Sbjct:  365 WIKAMSEEYQSLIDNDTWELVDPPTDRNIIGSRWVFKRKLNADGKVDRFKARLVAQGFAQRVGVDFDDSFAPVAMHSTFRLLL 447          
BLAST of mRNA_H-paniculata_contig42106.10792.1 vs. uniprot
Match: A0A2U1PSN3_ARTAN (Ribonuclease H-like domain-containing protein n=1 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1PSN3_ARTAN)

HSP 1 Score: 56.6 bits (135), Expect = 1.980e-7
Identity = 31/72 (43.06%), Postives = 40/72 (55.56%), Query Frame = 1
Query:    1 WQRAEEVEMQGLIDNGVWTQVERRKNKLVVSTMMLYRRKIGEDGKVEKYKYRLVAHGNRQITGIHFQEASSP 216
            W RA   E   LI N  W  V R  +  +V +M L+R K   +G + +YK RLVA+GN Q+TGI   E  SP
Sbjct:  608 WYRAMIDEYNALIKNNTWILVPRPPDANIVLSMWLFRHKHNANGSLNRYKARLVANGNTQVTGIDVDETFSP 679          
BLAST of mRNA_H-paniculata_contig42106.10792.1 vs. uniprot
Match: A0A2I0HGX5_PUNGR (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=2 Tax=Punica granatum TaxID=22663 RepID=A0A2I0HGX5_PUNGR)

HSP 1 Score: 52.8 bits (125), Expect = 2.190e-7
Identity = 26/65 (40.00%), Postives = 41/65 (63.08%), Query Frame = 1
Query:   22 EMQGLIDNGVWTQVERRKNKLVVSTMMLYRRKIGEDGKVEKYKYRLVAHGNRQITGIHFQEASSP 216
            E+  + +N VW  V+  +  +++   ++++RKIG DGKVE YK RLVA G RQ   + ++E  SP
Sbjct:    4 EIDSMRENQVWDLVDLPEGIVLIGNELVFKRKIGADGKVETYKARLVAKGYRQRQEVDYEETFSP 68          
BLAST of mRNA_H-paniculata_contig42106.10792.1 vs. uniprot
Match: A0A6G0WAE5_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=4 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WAE5_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 4.720e-7
Identity = 28/83 (33.73%), Postives = 48/83 (57.83%), Query Frame = 1
Query:    1 WQRAEEVEMQGLIDNGVWTQVERRKNKLVVSTMMLYRRKIGEDGKVEKYKYRLVAHGNRQITGIHFQEASSPAPAVASTKMIV 249
            W++AE   + G+IDN  +  +    N+  +    +Y +KI  +GKV ++K RLVA+G  Q  G+ F E+ SP   + + +MI+
Sbjct:    9 WEQAEMTALDGIIDNNTFKVIPPGPNERSIKCHWVYNKKIDSEGKVTRFKARLVANGYLQQHGVDFFESYSPVVKIVTLRMIL 91          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig42106.10792.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A151T9B6_CAJCA8.680e-932.53Retrovirus-related Pol polyprotein from transposon... [more]
A0A2C5X5E6_9PEZI9.770e-936.14Copia protein n=1 Tax=Ceratocystis fimbriata CBS 1... [more]
UPI00092E90812.510e-850.00uncharacterized protein LOC109363584 n=1 Tax=Lupin... [more]
UPI00090104FD7.520e-836.14uncharacterized protein LOC104779870 isoform X1 n=... [more]
A0A151T5R4_CAJCA1.070e-736.14Retrovirus-related Pol polyprotein from transposon... [more]
A0A1X7VXK3_AMPQE1.210e-745.59Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A182HAC3_AEDAL1.970e-731.33Integrase catalytic domain-containing protein n=1 ... [more]
A0A2U1PSN3_ARTAN1.980e-743.06Ribonuclease H-like domain-containing protein n=1 ... [more]
A0A2I0HGX5_PUNGR2.190e-740.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6G0WAE5_9STRA4.720e-733.73Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig42106contigH-paniculata_contig42106:579..827 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size249
Cds size225
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930281.474461-CDS-H-paniculata_contig42106:578..8031622930281.474461-CDS-H-paniculata_contig42106:578..803Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig42106 579..803 -
1691481223.7459486-CDS-H-paniculata_contig42106:578..8031691481223.7459486-CDS-H-paniculata_contig42106:578..803Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig42106 579..803 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930281.491149-UTR-H-paniculata_contig42106:803..8271622930281.491149-UTR-H-paniculata_contig42106:803..827Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig42106 804..827 -
1691481223.7556705-UTR-H-paniculata_contig42106:803..8271691481223.7556705-UTR-H-paniculata_contig42106:803..827Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig42106 804..827 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig42106.10792.1prot_H-paniculata_contig42106.10792.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig42106 579..803 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig42106.10792.1

>prot_H-paniculata_contig42106.10792.1 ID=prot_H-paniculata_contig42106.10792.1|Name=mRNA_H-paniculata_contig42106.10792.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=75bp
MQGLIDNGVWTQVERRKNKLVVSTMMLYRRKIGEDGKVEKYKYRLVAHGN
RQITGIHFQEASSPAPAVASTKMIV
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mRNA from alignment at H-paniculata_contig42106:579..827-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig42106.10792.1 ID=mRNA_H-paniculata_contig42106.10792.1|Name=mRNA_H-paniculata_contig42106.10792.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=249bp|location=Sequence derived from alignment at H-paniculata_contig42106:579..827- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGGCAAAGAGCGGAGGAAGTCGAGATGCAAGGTCTCATCGACAACGGGGT TTGGACGCAAGTCGAGCGCCGGAAGAATAAGCTAGTCGTGAGCACGATGA TGCTCTACAGGAGGAAAATCGGCGAGGACGGCAAAGTGGAGAAATACAAG TATCGCCTGGTCGCCCACGGGAACCGTCAGATCACGGGCATCCACTTCCA GGAAGCTTCATCCCCTGCACCCGCAGTGGCCAGCACAAAAATGATTGTC
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Coding sequence (CDS) from alignment at H-paniculata_contig42106:579..827-

>mRNA_H-paniculata_contig42106.10792.1 ID=mRNA_H-paniculata_contig42106.10792.1|Name=mRNA_H-paniculata_contig42106.10792.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=450bp|location=Sequence derived from alignment at H-paniculata_contig42106:579..827- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAAGGTCTCATCGACAACGGGGTTTGGACGCAAGTCGAGCGCCGGAA
GAATAAGCTAGTCGTGAGCACGATGATGCTCTACAGGAGGAAAATCGGCG
AGGACGGCAAAGTGGAGAAATACAAGTATCGCCTGGTCGCCCACGGGAAC
CGTCAGATCACGGGCATCCACTTCCAGGAAGCTTCATCCCCTGCACCCGC
AGTGGCCAGCACAAAAATGATTGTCATGCAAGGTCTCATCGACAACGGGG
TTTGGACGCAAGTCGAGCGCCGGAAGAATAAGCTAGTCGTGAGCACGATG
ATGCTCTACAGGAGGAAAATCGGCGAGGACGGCAAAGTGGAGAAATACAA
GTATCGCCTGGTCGCCCACGGGAACCGTCAGATCACGGGCATCCACTTCC
AGGAAGCTTCATCCCCTGCACCCGCAGTGGCCAGCACAAAAATGATTGTC
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