mRNA_H-paniculata_contig421.10788.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig421.10788.1
Unique NamemRNA_H-paniculata_contig421.10788.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig421.10788.1 vs. uniprot
Match: D7FNH1_ECTSI (U3 small nucleolar RNA-associated protein 11 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNH1_ECTSI)

HSP 1 Score: 398 bits (1023), Expect = 1.160e-134
Identity = 203/247 (82.19%), Postives = 229/247 (92.71%), Query Frame = 3
Query:   63 MSSLRNAVKRVEHKERAQPSSRRRLGLLEKHKDYVLRARNYGAKRDRVKALKLKAAMKNPDEFYFAMHRQKTQNGVHTLDGTESLPHDVIQMLKTQDLGYVHTQRAADERKAAKLRESLHMLEAGSQNKHTIFFDSEKEAKRFDVAKHFDTVPELAGRAFNRPRISTLETAQVTGATNRKQLRKLLKRKDASYGELLQRLERVGKLKKAEDHLVAQQTMMNSKGTKRKVKEAENGQPAVYKWKKERA 803
            MSSLRNAVKRVEHKERAQP+SRR+LGLLEKHKDYVLRARNYG KRDR++ALKLKAAMKNPDEFYFAMHR+KT+ GVH LDG E+LPHDV+Q+LKTQDLGYV T R+ADERKAAKLRESLHMLEAG +NKHTIFFDSEKEAK FDVAKHFDTVPELA RAFNRPR  TLE AQVTGATNR+QL+K+LK++DASY EL+QRLER  K+KKAE HL AQ+ +MNSKGTKRKV+EA++G+PAVY+WKKER+
Sbjct:    1 MSSLRNAVKRVEHKERAQPASRRKLGLLEKHKDYVLRARNYGKKRDRMQALKLKAAMKNPDEFYFAMHRKKTEGGVHVLDGAETLPHDVVQLLKTQDLGYVSTHRSADERKAAKLRESLHMLEAGPRNKHTIFFDSEKEAKEFDVAKHFDTVPELADRAFNRPRKDTLEKAQVTGATNRRQLKKVLKKRDASYSELMQRLERAEKMKKAEVHLEAQRKVMNSKGTKRKVQEAKDGRPAVYRWKKERS 247          
BLAST of mRNA_H-paniculata_contig421.10788.1 vs. uniprot
Match: A0A836CK24_9STRA (U3 small nucleolar RNA-associated protein 11 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CK24_9STRA)

HSP 1 Score: 291 bits (745), Expect = 1.080e-92
Identity = 145/247 (58.70%), Postives = 191/247 (77.33%), Query Frame = 3
Query:   63 MSSLRNAVKRVEHKERAQPSSRRRLGLLEKHKDYVLRARNYGAKRDRVKALKLKAAMKNPDEFYFAMHRQKTQNGVHTLDGTESLPHDVIQMLKTQDLGYVHTQRAADERKAAKLRESLHMLEAGSQNKHTIFFDSEKEAKRFDVAKHFDTVPELAGRAFNRPRISTLETAQVTGATNRKQLRKLLKRKDASYGELLQRLERVGKLKKAEDHLVAQQTMMNSKGTKRKVKEAENGQPAVYKWKKERA 803
            MSSLRNAVKR  HKERAQP+SR + GLLEKH DYVLRAR+Y AKRDR+ AL+LKA+++NPDEFYF MH+ KT+ GVH ++G+ SL H+   MLKTQD+ Y+H +RA D +KA +L+  LHML+A  QN HT+F  ++++ + FD A++FDT PELAGR FNRPR++TLE+ QV GA +R  L+K LK++DA+Y E+  R ER  K+ +A  HL AQ+ +M ++GT  KVK AE GQP VYKWK++RA
Sbjct:    1 MSSLRNAVKRKTHKERAQPASRSKFGLLEKHSDYVLRARDYNAKRDRLNALRLKASLRNPDEFYFGMHKAKTKEGVHQVEGSSSLDHETAHMLKTQDMAYIHMKRAVDIKKAERLKAGLHMLDAPPQNTHTVFVKNKRQRRAFDAAEYFDTAPELAGRTFNRPRMATLESKQVLGAESRADLKKALKQRDAAYQEVEAREERARKMTRAAAHLAAQRALMTARGTVTKVKGAEKGQPPVYKWKRQRA 247          
BLAST of mRNA_H-paniculata_contig421.10788.1 vs. uniprot
Match: A0A8K1CCZ2_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CCZ2_PYTOL)

HSP 1 Score: 248 bits (633), Expect = 6.580e-76
Identity = 132/246 (53.66%), Postives = 175/246 (71.14%), Query Frame = 3
Query:   69 SLRNAVKRVEHKERAQPSSRRRLGLLEKHKDYVLRARNYGAKRDRVKALKLKAAMKNPDEFYFAMHRQKTQNGVHTLDG--TESLPHDVIQMLKTQDLGYVHTQRAADERKAAKLRESLHMLEAGSQNKHTIFFDSEKEAKRFDVAKHFDTVPELAGRAFNRPRISTLETAQVTGATNRKQLRKLLKRKDASYGELLQRLERVGKLKKAEDHLVAQQTMMNSKGTKRKVKEAENGQPAVYKWKKER 800
            SLRN VKR EHKER Q   R++LGLLEKHKDYVLRAR+Y  K+DR++ +KLKAA +NPDEFYF M+  +T++GVH  +   +E L  + +++LKTQDL Y+H +RA D RKA KL + LH ++A   NKHT+F DS ++   FDVA HFDT PELA RAFNR R  TL+T  +   T++KQLR L K +DA Y EL  RL R  K+++  D L  ++ +  +KG KRKV++ ++ +P VYKWKKER
Sbjct:    2 SLRNVVKRREHKERGQLQERKKLGLLEKHKDYVLRARDYNKKQDRLRTMKLKAAFRNPDEFYFKMNTTRTEDGVHVSENNHSEKLSAEALKVLKTQDLAYLHMKRAVDLRKAEKLTQGLHFIDAPKNNKHTVFVDSSEDLNTFDVATHFDTAPELADRAFNRLRKETLKTTTIQATTDKKQLRALTKERDAVYRELNDRLIRATKIQQMSDRLDLERKVQ-AKGKKRKVQDGDSSRPPVYKWKKER 246          
BLAST of mRNA_H-paniculata_contig421.10788.1 vs. uniprot
Match: A0A5D6XJY8_9STRA (U3 small nucleolar RNA-associated protein 11 n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XJY8_9STRA)

HSP 1 Score: 243 bits (620), Expect = 6.130e-74
Identity = 127/248 (51.21%), Postives = 173/248 (69.76%), Query Frame = 3
Query:   69 SLRNAVKRVEHKERAQPSSRRRLGLLEKHKDYVLRARNYGAKRDRVKALKLKAAMKNPDEFYFAMHRQKTQNGVHTLDGT----ESLPHDVIQMLKTQDLGYVHTQRAADERKAAKLRESLHMLEAGSQNKHTIFFDSEKEAKRFDVAKHFDTVPELAGRAFNRPRISTLETAQVTGATNRKQLRKLLKRKDASYGELLQRLERVGKLKKAEDHLVAQQTMMNSKGTKRKVKEAENGQPAVYKWKKER 800
            SLRN VKR EHKER QP  R++LGLLEKHKDYV RAR+Y +K+DR++ ++LKAA +NPDEFYF M+  +T+ GVH  D      ++L  D +++LKTQD+ Y+H +RA D RKA KL   LH ++A + NKH +F DSE +  +FDVA HFDT PELA RAFNR R+  L+T  +   ++ K+++K  + +D  Y EL  RLER   L +    L  ++ +  +KG K K+K+AENGQPAVY+WKK+R
Sbjct:    2 SLRNVVKRREHKERGQPQERKKLGLLEKHKDYVKRARDYNSKQDRLRTMQLKAAFRNPDEFYFRMNATRTEGGVHVSDNNRLDGKALTADALKVLKTQDVAYLHLKRAVDMRKAEKLNAGLHFIDAPTANKHVVFVDSEAQLAKFDVAAHFDTAPELADRAFNRVRMDALKTLALPAVSSAKEIKKRNRERDGVYRELSDRLERAATLDRMRAKLDLERKVQ-AKGKKMKIKDAENGQPAVYRWKKQR 248          
BLAST of mRNA_H-paniculata_contig421.10788.1 vs. uniprot
Match: K3WAT9_GLOUD (U3 small nucleolar RNA-associated protein 11 n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WAT9_GLOUD)

HSP 1 Score: 241 bits (614), Expect = 4.810e-73
Identity = 133/249 (53.41%), Postives = 176/249 (70.68%), Query Frame = 3
Query:   63 MSSLRNAVKRVEHKERAQPSSRRRLGLLEKHKDYVLRARNYGAKRDRVKALKLKAAMKNPDEFYFAMHRQKTQNGVH--TLDGTESLPHDVIQMLKTQDLGYVHTQRAADERKAAKLRESLHMLEA-GSQNKHTIFFDSEKEAKRFDVAKHFDTVPELAGRAFNRPRISTLETAQVTGATNRKQLRKLLKRKDASYGELLQRLERVGKLKKAEDHLVAQQTMMNSKGTKRKVKEAENGQPAVYKWKKER 800
            MSSLRN VKR EHKER Q   R++LGLLEKHKDYV RAR+Y  K+D +KAL +KAA +NPDEFYF M+  +T++GVH  T +  + L  + +++LKTQDL Y+H +RA D RKA KL E LH ++A G  NKH +F DS+ E + FDVAKHFDTVPE+A RAFNR R  TL+T  +    ++K L+KL   +DA Y EL  RL+R   + +    L  ++ +  +KG K K+K+AE+GQPAVY+WKK+R
Sbjct:    1 MSSLRNVVKRREHKERGQLRERKKLGLLEKHKDYVKRARDYNKKQDHLKALAVKAAFRNPDEFYFRMNSTRTEDGVHVSTHNHHKQLSAEALKVLKTQDLAYLHMKRAVDLRKAEKLNEGLHFIDAAGKDNKHVVFVDSKDEVESFDVAKHFDTVPEIADRAFNRLRKDTLKTVSLPAVQDKKTLKKLGIERDAVYRELNDRLQRASTIDRMRAKLDLERKVQ-AKGKKMKIKDAEDGQPAVYRWKKQR 248          
BLAST of mRNA_H-paniculata_contig421.10788.1 vs. uniprot
Match: D0NVW8_PHYIT (U3 small nucleolar RNA-associated protein 11 n=14 Tax=Phytophthora TaxID=4783 RepID=D0NVW8_PHYIT)

HSP 1 Score: 233 bits (593), Expect = 6.480e-70
Identity = 133/249 (53.41%), Postives = 169/249 (67.87%), Query Frame = 3
Query:   63 MSSLRNAVKRVEHKERAQPSSRRRLGLLEKHKDYVLRARNYGAKRDRVKALKLKAAMKNPDEFYFAMHRQKTQNGVH--TLDGTESLPHDVIQMLKTQDLGYVHTQRAADERKAAKLRESLHMLEAGSQNKHTIFFDSEKEAKRFDVAKHFDTVPELAGRAFNRPRISTLETAQVTG-ATNRKQLRKLLKRKDASYGELLQRLERVGKLKKAEDHLVAQQTMMNSKGTKRKVKEAENGQPAVYKWKKER 800
            MSSLRN VKR EHKER Q   RR+LGLLEKHKDYV RAR+Y +K+ R+K L+LKAA++NPDEFY  M   KT+ GVH  T +  +S+  + ++ LKTQDL Y+H +RA D RKA +L   LH ++A   N HT+F D E++   FDVA+HFDT PEL  RAFNR R   LETA++   A N KQ  K+   KDA Y EL  RL R  KL +    L  ++ +  +KG K+KVK AENG PAVY+WK++R
Sbjct:    1 MSSLRNVVKRREHKERGQLRERRKLGLLEKHKDYVKRARDYNSKQKRLKTLQLKAALRNPDEFYHRMRGTKTEGGVHVSTHNHIKSVETEALRTLKTQDLAYLHMKRAVDLRKAERLNRGLHFVDAPKNNNHTVFVDDEEQVDSFDVAEHFDTAPELVDRAFNRIRKRDLETAELPDLAANPKQKYKMQVEKDAMYRELRDRLARANKLGQMSAKLDLERKVQ-AKGRKKKVKAAENGMPAVYRWKQQR 248          
BLAST of mRNA_H-paniculata_contig421.10788.1 vs. uniprot
Match: A0A0P1B0R4_PLAHL (U3 small nucleolar RNA-associated protein 11 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1B0R4_PLAHL)

HSP 1 Score: 231 bits (588), Expect = 3.600e-69
Identity = 131/249 (52.61%), Postives = 172/249 (69.08%), Query Frame = 3
Query:   63 MSSLRNAVKRVEHKERAQPSSRRRLGLLEKHKDYVLRARNYGAKRDRVKALKLKAAMKNPDEFYFAMHRQKTQNGVH--TLDGTESLPHDVIQMLKTQDLGYVHTQRAADERKAAKLRESLHMLEAGSQNKHTIFFDSEKEAKRFDVAKHFDTVPELAGRAFNRPRISTLETAQVTG-ATNRKQLRKLLKRKDASYGELLQRLERVGKLKKAEDHLVAQQTMMNSKGTKRKVKEAENGQPAVYKWKKER 800
            MSSLRN VKR EHKER Q   RR+LGLLEKHKDYV RA++Y +K+ R+K L+LKAA++NPDEFY  MH  KT+ GVH  T +  +SL  + ++ LKTQDL Y+H +RA D RKA +L   LH ++A   NKHT+F D +++ + FDVA++FDTVPELA RAFNR R   LE  ++   A + KQ  K+   +DA Y EL  RL R  K+ +    L  ++ +  +KG KRKVK AENG PAVY+WK++R
Sbjct:    1 MSSLRNVVKRREHKERGQLRDRRKLGLLEKHKDYVKRAQDYNSKQKRLKMLQLKAALRNPDEFYHRMHNNKTEGGVHISTHNHLKSLSTEALRTLKTQDLAYLHLKRAVDLRKAERLNRGLHFVDAPKDNKHTVFVDDKEQVENFDVAQYFDTVPELADRAFNRIRRRDLEMVELPDMAASPKQKYKMQVERDALYRELRDRLTRAKKIGQMSAKLDLERKVQ-AKGRKRKVKAAENGMPAVYRWKQQR 248          
BLAST of mRNA_H-paniculata_contig421.10788.1 vs. uniprot
Match: A0A4D9DA46_9STRA (U3 small nucleolar RNA-associated protein 11 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DA46_9STRA)

HSP 1 Score: 228 bits (581), Expect = 4.080e-68
Identity = 127/247 (51.42%), Postives = 174/247 (70.45%), Query Frame = 3
Query:   66 SSLRNAVKRVEHKERAQPSSRRRLGLLEKHKDYVLRARNYGAKRDRVKALKLKAAMKNPDEFYFAMHRQKTQNGVHTLDGTE-SLPHDVIQMLKTQDLGYVHTQRAADERKAAKLRESLHMLEAGSQNKHTIFFDSEKEAKRFDVAKHFDTVPELAGRAFNRPRISTLET-AQVTGATNRKQLRKLLKRKDASYGELLQRLERVGKLKKAEDHLVAQQTMMNSKGTKRKVKEAENGQPAVYKWKKER 800
            +SLRNA+ R  +KER+QP++R++ GLLEKHKDYV RA +Y  K   + +L+ KAA +NPDEFYFAM + +T+ GVH +   E SLPHD I +LKTQD+ YV  +RA D +KA KL+  LH L   + NKHT+F D+E E + FD AKHF T P L  RAFNRP++ TLET   V G  N  +L+K+ K ++ +Y EL +RL+R    K+  +H+  ++ +M  KG KRKV+EAE+G+PAV+KWK+ER
Sbjct:    4 ASLRNAIPRKTNKERSQPAARKKFGLLEKHKDYVQRANDYKRKSKALASLREKAAFRNPDEFYFAMTKGQTKEGVHRVRPAEASLPHDHIALLKTQDMRYVTMKRALDVKKAEKLQAGLHFLTEEAANKHTVFVDTEAEVETFDPAKHFGTDPALVTRAFNRPKLETLETPGAVLGVANVGELKKVRKAREKAYTELGERLKRSLSFKEVLEHMQVEKNVMG-KGRKRKVQEAEDGKPAVFKWKRER 249          
BLAST of mRNA_H-paniculata_contig421.10788.1 vs. uniprot
Match: A0A7S0UKD3_9STRA (U3 small nucleolar RNA-associated protein 11 n=1 Tax=Pseudo-nitzschia delicatissima TaxID=44447 RepID=A0A7S0UKD3_9STRA)

HSP 1 Score: 227 bits (578), Expect = 2.080e-67
Identity = 128/269 (47.58%), Postives = 176/269 (65.43%), Query Frame = 3
Query:   63 MSSLRNAVKRVEHKERAQPSSRRRLGLLEKHKDYVLRARNYGAKRDRVKALKLKAAMKNPDEFYFAMHRQKTQNGVH-TLDGTESLPHDVIQMLKTQDLGYVHTQRAADERKAAKLRESLHMLEA------GSQNKHTIFFDSEKEAKRFDVAKHFDTVPELAGRAFNRPRISTLETAQVTGATNRKQL----------------RKLLKRKDASYGELLQRLERVGKLKKAEDHLVAQQTMMNSKGTKRKVKEAENGQPAVYKWKKER 800
            MSSLRNAVKR+ HKER+QP  R+ LG+LEK KDY  RA +Y  K DR+KA++ K AMKNPDEFYF MH  K +NG H + +    L  ++++++K QDL YV  Q+  D +KA KL+ SLH+L+A      GS+ KHTIF  S+KEA  FDVA+HFDT+PE  GRAFNR R   +E       +  +QL                +KL K + ++Y E+  R ER  K++ AEDHL+ ++ +++SKG KRK+K  E+G+PA YKW+++R
Sbjct:    1 MSSLRNAVKRIAHKERSQPLDRQHLGILEKKKDYKQRAIDYHRKEDRIKAMQQKVAMKNPDEFYFGMHNSKVENGKHRSSEDYRVLDPELVKVMKDQDLSYVRMQKQKDIKKAEKLQASLHLLDADNEDAVGSKRKHTIFVKSKKEASEFDVAQHFDTIPEFEGRAFNRLRKRDIEKLSKNNTSGERQLTTEELHKLRKTEQKLAKKLAKARASAYREMESRRERADKMRTAEDHLITEK-LVSSKGRKRKLKTGEDGKPAQYKWRRKR 268          
BLAST of mRNA_H-paniculata_contig421.10788.1 vs. uniprot
Match: A0A3R7K0P1_9STRA (U3 small nucleolar RNA-associated protein 11 n=4 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7K0P1_9STRA)

HSP 1 Score: 226 bits (577), Expect = 3.020e-67
Identity = 129/250 (51.60%), Postives = 169/250 (67.60%), Query Frame = 3
Query:   60 SMSSLRNAVKRVEHKERAQPSSRRRLGLLEKHKDYVLRARNYGAKRDRVKALKLKAAMKNPDEFYFAMHRQKTQNGVH--TLDGTESLPHDVIQMLKTQDLGYVHTQRAADERKAAKLRESLHMLEAGSQNKHTIFFDSEKEAKRFDVAKHFDTVPELAGRAFNRPRISTLETAQVTG-ATNRKQLRKLLKRKDASYGELLQRLERVGKLKKAEDHLVAQQTMMNSKGTKRKVKEAENGQPAVYKWKKER 800
            SMSSLRN VKR EHKER Q   RR+LGLLEKHKDYV RA++Y  K+  ++ L+LKA+M+NPDEFY+ M   KT+ GVH  T +  + L  + ++ LKTQDL Y+H +RA D RKA KL   LH ++    NKHT+F D + +  +FDVA+HFDT PELA RAFNR R + LET ++   A + KQ  K+   KDA Y EL  RLER  K+ +    L  ++ +  +KG K KVK AE+G PAVY+WK++R
Sbjct:   21 SMSSLRNVVKRREHKERGQLRERRKLGLLEKHKDYVKRAKDYNQKQKHLRNLQLKASMRNPDEFYYKMIHGKTEGGVHISTHNHAKQLNAEALRTLKTQDLAYLHMKRAVDLRKAEKLNRGLHFIDTPKNNKHTVFVDEDDDVNKFDVAEHFDTAPELADRAFNRLRKADLETMELPDLAADPKQKYKMQVEKDAMYRELRDRLERAKKIGRMSAKLDLERKVQ-AKGKKMKVKGAEDGMPAVYRWKQQR 269          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig421.10788.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FNH1_ECTSI1.160e-13482.19U3 small nucleolar RNA-associated protein 11 n=2 T... [more]
A0A836CK24_9STRA1.080e-9258.70U3 small nucleolar RNA-associated protein 11 n=1 T... [more]
A0A8K1CCZ2_PYTOL6.580e-7653.66Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A5D6XJY8_9STRA6.130e-7451.21U3 small nucleolar RNA-associated protein 11 n=1 T... [more]
K3WAT9_GLOUD4.810e-7353.41U3 small nucleolar RNA-associated protein 11 n=1 T... [more]
D0NVW8_PHYIT6.480e-7053.41U3 small nucleolar RNA-associated protein 11 n=14 ... [more]
A0A0P1B0R4_PLAHL3.600e-6952.61U3 small nucleolar RNA-associated protein 11 n=1 T... [more]
A0A4D9DA46_9STRA4.080e-6851.42U3 small nucleolar RNA-associated protein 11 n=2 T... [more]
A0A7S0UKD3_9STRA2.080e-6747.58U3 small nucleolar RNA-associated protein 11 n=1 T... [more]
A0A3R7K0P1_9STRA3.020e-6751.60U3 small nucleolar RNA-associated protein 11 n=4 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig421contigH-paniculata_contig421:23249..28107 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score399.4
Seed ortholog evalue1.2e-108
Seed eggNOG ortholog2880.D7FNH1
Preferred nameUTP11L
KEGG koko:K14685,ko:K14769
KEGG TC2.A.100.1
KEGG Pathwayko04216,ko04978,map04216,map04978
Hectar predicted targeting categoryother localisation
GOsGO:0000447,GO:0000460,GO:0000462,GO:0000466,GO:0000469,GO:0000472,GO:0000478,GO:0000479,GO:0000480,GO:0000966,GO:0000967,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005576,GO:0005615,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0006139,GO:0006364,GO:0006396,GO:0006412,GO:0006518,GO:0006725,GO:0006807,GO:0007275,GO:0007399,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0010941,GO:0010942,GO:0016070,GO:0016072,GO:0019538,GO:0022613,GO:0030490,GO:0030515,GO:0030684,GO:0031974,GO:0031981,GO:0032040,GO:0032501,GO:0032502,GO:0032991,GO:0034470,GO:0034471,GO:0034641,GO:0034645,GO:0034660,GO:0042254,GO:0042274,GO:0042981,GO:0043043,GO:0043065,GO:0043067,GO:0043068,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044421,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0048518,GO:0048522,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0065007,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904
EggNOG free text desc.rRNA processing
EggNOG OGsCOG5223@1,KOG3237@2759
Ec32 ortholog descriptionSmall-subunit processome, Utp11
Ec32 orthologEc-01_005480.1
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000,ko03009
Exons6
Model size1516
Cds size747
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig421.10788.1prot_H-paniculata_contig421.10788.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig421 23956..28045 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930280.828192-UTR-H-paniculata_contig421:23248..239551622930280.828192-UTR-H-paniculata_contig421:23248..23955Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig421 23249..23955 -
1691481223.4501612-UTR-H-paniculata_contig421:23248..239551691481223.4501612-UTR-H-paniculata_contig421:23248..23955Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig421 23249..23955 -
1622930280.9412377-UTR-H-paniculata_contig421:28045..281071622930280.9412377-UTR-H-paniculata_contig421:28045..28107Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig421 28046..28107 -
1691481223.5263934-UTR-H-paniculata_contig421:28045..281071691481223.5263934-UTR-H-paniculata_contig421:28045..28107Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig421 28046..28107 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930280.846189-CDS-H-paniculata_contig421:23955..240961622930280.846189-CDS-H-paniculata_contig421:23955..24096Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig421 23956..24096 -
1691481223.4631193-CDS-H-paniculata_contig421:23955..240961691481223.4631193-CDS-H-paniculata_contig421:23955..24096Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig421 23956..24096 -
1622930280.8647618-CDS-H-paniculata_contig421:24738..248281622930280.8647618-CDS-H-paniculata_contig421:24738..24828Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig421 24739..24828 -
1691481223.4729772-CDS-H-paniculata_contig421:24738..248281691481223.4729772-CDS-H-paniculata_contig421:24738..24828Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig421 24739..24828 -
1622930280.8821526-CDS-H-paniculata_contig421:25237..253281622930280.8821526-CDS-H-paniculata_contig421:25237..25328Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig421 25238..25328 -
1691481223.4845102-CDS-H-paniculata_contig421:25237..253281691481223.4845102-CDS-H-paniculata_contig421:25237..25328Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig421 25238..25328 -
1622930280.8958333-CDS-H-paniculata_contig421:25870..260221622930280.8958333-CDS-H-paniculata_contig421:25870..26022Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig421 25871..26022 -
1691481223.4989285-CDS-H-paniculata_contig421:25870..260221691481223.4989285-CDS-H-paniculata_contig421:25870..26022Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig421 25871..26022 -
1622930280.9081182-CDS-H-paniculata_contig421:26690..268601622930280.9081182-CDS-H-paniculata_contig421:26690..26860Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig421 26691..26860 -
1691481223.5080602-CDS-H-paniculata_contig421:26690..268601691481223.5080602-CDS-H-paniculata_contig421:26690..26860Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig421 26691..26860 -
1622930280.9227614-CDS-H-paniculata_contig421:27942..280451622930280.9227614-CDS-H-paniculata_contig421:27942..28045Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig421 27943..28045 -
1691481223.5173345-CDS-H-paniculata_contig421:27942..280451691481223.5173345-CDS-H-paniculata_contig421:27942..28045Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig421 27943..28045 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig421.10788.1

>prot_H-paniculata_contig421.10788.1 ID=prot_H-paniculata_contig421.10788.1|Name=mRNA_H-paniculata_contig421.10788.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=249bp
MSSLRNAVKRVEHKERAQPSSRRRLGLLEKHKDYVLRARNYGAKRDRVKA
LKLKAAMKNPDEFYFAMHRQKTQNGVHTLDGTESLPHDVIQMLKTQDLGY
VHTQRAADERKAAKLRESLHMLEAGSQNKHTIFFDSEKEAKRFDVAKHFD
TVPELAGRAFNRPRISTLETAQVTGATNRKQLRKLLKRKDASYGELLQRL
ERVGKLKKAEDHLVAQQTMMNSKGTKRKVKEAENGQPAVYKWKKERAS*
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mRNA from alignment at H-paniculata_contig421:23249..28107-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig421.10788.1 ID=mRNA_H-paniculata_contig421.10788.1|Name=mRNA_H-paniculata_contig421.10788.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4859bp|location=Sequence derived from alignment at H-paniculata_contig421:23249..28107- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGGGATCAATCACCGCACCGCACACGCACGATTGTTGTGGGCGACGCCGA CTATAAAGGAGCATGTCATCTCTTCGCAATGCAGTGAAGCGCGTAGAGCA CAAGGAGAGGGCTCAGCCATCTTCTCGGAGGAGGCTCGGGCTCTTGGAGA AACACAAGGATTATGGTGAGTGATAGTTGTGTGGTTTGTATTTGCGGCTG TGTATCCGATCGCTGCTTTGCTGCTGTTGTGCGAGATGACAAGATGTAGT TGTATCGCTGTACTTACGTACAGTTGTTAGTGATCAATTTCGAATGCCTT GATTGCCCGTCATGGAGTTGGTATGTCTGTGCATTGCGGTACTGTACTGA GTAAGTGATATTGGGCCACTTCACTGTATACAGGGAAACGCCCCACAGTT TGATACAGTACCGTAAATTACAGACAAGGACGTCGTCCTAGGCCTGGATT GAGATGCAAGATAGACGTTCGGCGGAGGGAATGATGGGGTGATGATGAAT ACGGCGAGGGGGCTACGCGATCATTCTTTTTGCCTCTATCGCAGACTTCT ACCGTGTCACTGTGTTCATGCTCAAAACTTCGCAGCCAGGCGAGTTTGGT GAAAACGAGCATGGTGGGGTAACGGCGCGGCACTCTACCCTGATAGAAAA CAATAGACGCCGCCTAAGTTGAACAGGTGAATTATATGACCTATGAGATC AGCCTGATCCCGCAGTCTCGCCGATTCAATCCAAGCGGCGAAGTGTGTGA AATTACGCCATGCAAAATGTTAATCAGTCTGCTGGTCGTCGAAGTTGTTG TTGCTCCACTGTCAATGCGAATCCGTTGAGTAAACAAACGCGGGTGATTA GCCTTGCCCTATGTTTTTTGTGAACCATCCGCTACCATACTCCAGCATTA CGAGGTCGGAAGCCCTCGTGTTACTGATATAATCTTGCTGGGAAGTCTTC ACAACCGCAAATTAAAGTCAGCTGCATACCCTCAACATAAGTACAATGCC CCTCCCGCCCCTCCCTCAGATTTCTCTCTCCGTCCCCCCCCCCACTAATA GCGGCGGGACTGTCAAATGCCTTCATGGTTTCTTTGAGCTTTTAGTGTCT TAAGGGTTGAGTGTTTTTTTTGTTTTTTCTCAGCCGCTACCTCGCCCTGT CAAACTCGATATCCTATCCGTCCACCCAACCCCCTCCCCCCTTCATGTTT CCGTTCTCAACGGCCTCTTTTCAACGTGGACGTTTCGCTTATGGTAGTTC TCCGAGCTCGGAATTATGGCGCCAAGAGAGATCGCGTGAAGGCCCTCAAG CTCAAGGCGGCCATGAAAAACCCTGATGAATTTTATTTCGCCATGCACCG GCAGAAAACCCAAAATGGGGTTCACACTCTCGACGGAACGGAGTCTTTAC CGCACGACGTCATCCAGGTGCAGTATCTACATTATTTACGCTGGGCCTTG ATGACCGGGGCGCGTGAAGGCGCCGACGGGGGGCTACAATGTCTAACATA ATCTTGTGAGCGACTCGCTCGTATTTTTATTTTTTATTTTATGTGCTTGC TCCTCATGCTGGTGTTGTGCAGCTTGCGCTTTAAGCTGCCATGCATTATA GTAATGTGATAGTCGTCAGCAGCAGTGAGCAACGTAATCTGCAAGATGAA AACAATGCACTTCAGATTCTCACAACGTCAATACACTCATGCTGGGGGTT GCTTTGAGTGTACTTCCTTAGGGTAAGGGTTGTTGCGTGTTGGATACGTG GATCTACCGGGACCTGTTCTTATGGAGGCATCCTTCCTTGTCCCCGTTGT TATCGTGACCGTAGTATTGTATCATCGATTGGACTTGGAAGTCTGTCGAG TGGAAAATATGGATTTTCGTTGACCCCTCGAGCTTGTTGCTCAAATGTAG TGGATTAGATCGCTCTAGCTTGCGCTCGAAATATTAATGGCGTGTCTGAG CTACAATAACTCTGCTGTATCGTTTGACCCTCTTATAGTAATTCATTTTT AGAATGTTTTGCTCTCTCTCCGCTCACTATCTCCCCCACGCTTGCCGTTG CCTGTTCTCGTGATGGAAACGAACTCCCCCAATAGATGCTGAAAACTCAA GATCTGGGATACGTGCATACCCAGCGAGCTGCGGACGAACGAAAAGCGGC TAAGCTGCGAGAGTCGTTGCATATGCTGGAGGCCGGGTCTCAAAACAAAC ACACAATTTTCTTCGACTCGGAGAAAGAGGCCAAACGGTACGTGAGAGGG GGGAAGGGGGTGGTGGGGGGGCTATTATACGTGGTAGCGCTCCTACACAT CGATAACTTTGATGCACTGTAGAAACTGAAGAAGCGGACATAACACGCCC CGAAAGAACGATCCACCTGCCTGGTCTTCTGCACCAGGTATAGTTTATAC AGTATGTACGGACAAGTCATGCTAACGGTGTGGAACTGCGATTGTATAGC TAATAGTTTCATAGCTGCGTATACAAATGTACTGATGGCCAGTAAACATC AAAGAGGGGGGAGGGGGATATGACTACGGTGTCTCTCTCTAGTCACCAGT TGTTTGACTATAAAGTTGTGGTGCCCTTTTAAATTGTACCCGTCCACCTC TACCTCCGCCAGAGCGGGTCGACGACTTCGTGCTTATTTTGTTTTGCTTT CATCGCGAGAGGGGGCGAGGAGGACTCGACACTCCGTTGTGGAGAGTTTA CTCCGGAGTATGTCACTAAAACAAGACGGGAAACACGCTGCTCACATGCG CACCTCCCTCCGCACACCCCCCTCTTCAGATTCGATGTAGCCAAGCACTT CGACACCGTACCGGAGCTTGCGGGCAGAGCGTTCAACCGCCCGCGAATAA GCACGTTGGAAACTGCCCAGGTGGGAAATACGAACAACAAGCCCCTCGCC TACGTGTGTGTGTATGTTTGTATGTAAAGACATGTTTATACTTGTCCATG AAAAAAGGGTGCCGAGTACCTGGACGACGTGCATGTCTCGAAAATTAAAT GTATCATTGACATTCCTTGTGCAGTGTTTGTTCACAGTAGCAACCACATT GCCGTTCTTCGCCTCTCTGGGACATGATGCAGCTACGCGTGCTCCGTCAA TAGGTACGCTGTGCATATGGGATGACACACCTTGAACAGAAAAACTCGTT TGCGTGTGGGCTATCATCTGGCCATCTGTGTACATCTGCAGCAAATCTGA CCAGATGAGATGTCTGCTGAGCCAAGGTTGACATATGTAAGTGGCTGGGG TGTTTTGGTTTGTCCTATCTCGTCGGCAGGTGACGGGAGCGACAAACAGG AAACAACTGCGAAAACTGTTGAAGAGGAAGGATGCATCGTACGGCGAGCT CCTGCAGCGTTTGGAAAGGGTGAGTAAGCCATGGCTGTCAGTAACGCACA CACATTGATGTCTATTTCTAAAAAGTGATTTGAATGACCGTTCGACAACA GTACTGATTAGTTAGCTTGCAATGCTGCTGCCTATACTAGCTTCTCTATC ACGTGCAATGACTTCTTGCTTGATCTATATATATGCTTGGCGCTAGTACA TATCTGAATATGTTTGTGTGTGCTACTTGTGCTTTACGTTTCAAAGGACC GATCCCGCAGAAGTCATGGTCCACAATTCATGCTTCATTGTTTTTTGTAT CGACAGTGGTGACTGACGTCAACACGATGACGACGTATTTTTGCGCAATC GCAGGGGAGTGAAGGATATTAAATACTGATTTGATGCAGATTCCGATGGG CGTTAAGCTCTACTTTTTTTTTTGTTGTACTTTATATAGTTTCAGGAATT TGCGGTTAGCTACGGTTTTTTGGCACCATCCTCACACTCAACCAACACCA ACTTAGCCTTCTGCAATCGTGATAATCATTTCGTTTTTTTCCGTTGTATT CGATGGCGTCTTCCCGGTGGTATTTCTTCATTTTTTCATGTTGGTTTACT TATTTCCTCCTTGTTTTTTTTGCCATTTCGGCAATTTCTTATATTTATTT CATTTCCCCAGGTGGGCAAGCTGAAAAAGGCAGAAGATCATTTAGTGGCC CAGCAGACAATGATGAACTCAAAGGGAACCAAGCGAAAAGTGAAAGAAGC CGAGAACGGCCAACCGGCAGTGTATAAATGGAAGAAGGAGAGAGCAAGCT GATCTGATCTAATCTAATATGTTCTTGTTGATGCTCTACAACTACCCAGT GATGTTGCTGCCGGGTGTTGGTGGAGGTCTGATTGTGCGCGTTCGTGCAC GCCCAGAGAGCGATTTGCTCGTGTGTCCCTTCCTGAGGTTTGTCGCAGTG GAATCATGAGTTTTAATCTTTTGGGAGAGTAGGCTGTTCCTTTTTCGGAC CTTCTATGCAGCAGCCGAGGTCAACACTTGTTGTTGTTGTTGTTGTTGTT CTGGCTCTTTTTGTATATGTTTCGCGTTTGTGCTGGCGTTGACCATCGGA CGGAGTTAATTGAACGAGGAACCACGTTTGTGCCCGATGGTGTGTTGAAG TTTGTTTTGCTAAATTTCAAGCATCCGGAATCTATTTGGTGCAGCGTTGT CAGCCGTGGTGACGCAGAAACGGCCTAAGTTGGAGGAAATGGGTTGTTAC GCGAGTGTGGGACTCCCTGGCGTTGCACTCGCAGATATGAATAGTGCCGT TTTTTACCGTATACAAACGATGTGGTTGTGTGTTTTGTATAATACTGCCC CATCGATCGCGAATTGGGTGCAGCACCGAAAATAATGAGCCAGGTTTGCT TGTGTTCGTTTTATCTGCTGTCATCGCTGAACGAAAGAGTAGCAAGAGCA ATGCGCCCGTTTTCATCTCGTTCCTGATCAGCGGCCCCGAATATTCATGA AAATTAAGC
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Coding sequence (CDS) from alignment at H-paniculata_contig421:23249..28107-

>mRNA_H-paniculata_contig421.10788.1 ID=mRNA_H-paniculata_contig421.10788.1|Name=mRNA_H-paniculata_contig421.10788.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1494bp|location=Sequence derived from alignment at H-paniculata_contig421:23249..28107- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCATCTCTTCGCAATGCAGTGAAGCGCGTAGAGCACAAGGAGAGGGC
TCAGCCATCTTCTCGGAGGAGGCTCGGGCTCTTGGAGAAACACAAGGATT
ATGATGTCATCTCTTCGCAATGCAGTGAAGCGCGTAGAGCACAAGGAGAG
GGCTCAGCCATCTTCTCGGAGGAGGCTCGGGCTCTTGGAGAAACACAAGG
ATTATGTTCTCCGAGCTCGGAATTATGGCGCCAAGAGAGATCGCGTGAAG
GCCCTCAAGCTCAAGGCGGCCATGAAAAACCCTGATGAATTTTATTTCGC
CATGCACCGGCAGAAAACCCAAAATGGGGTTCACACTCTCGACGGAACGG
AGTCTTTACCGCACGACGTCATCCAGTTCTCCGAGCTCGGAATTATGGCG
CCAAGAGAGATCGCGTGAAGGCCCTCAAGCTCAAGGCGGCCATGAAAAAC
CCTGATGAATTTTATTTCGCCATGCACCGGCAGAAAACCCAAAATGGGGT
TCACACTCTCGACGGAACGGAGTCTTTACCGCACGACGTCATCCAGATGC
TGAAAACTCAAGATCTGGGATACGTGCATACCCAGCGAGCTGCGGACGAA
CGAAAAGCGGCTAAGCTGCGAGAGTCGTTGCATATGCTGGAGGCCGGGTC
TCAAAACAAACACACAATTTTCTTCGACTCGGAGAAAGAGGCCAAACGAT
GCTGAAAACTCAAGATCTGGGATACGTGCATACCCAGCGAGCTGCGGACG
AACGAAAAGCGGCTAAGCTGCGAGAGTCGTTGCATATGCTGGAGGCCGGG
TCTCAAAACAAACACACAATTTTCTTCGACTCGGAGAAAGAGGCCAAACG
ATTCGATGTAGCCAAGCACTTCGACACCGTACCGGAGCTTGCGGGCAGAG
CGTTCAACCGCCCGCGAATAAGCACGTTGGAAACTGCCCAGATTCGATGT
AGCCAAGCACTTCGACACCGTACCGGAGCTTGCGGGCAGAGCGTTCAACC
GCCCGCGAATAAGCACGTTGGAAACTGCCCAGGTGACGGGAGCGACAAAC
AGGAAACAACTGCGAAAACTGTTGAAGAGGAAGGATGCATCGTACGGCGA
GCTCCTGCAGCGTTTGGAAAGGGTGACGGGAGCGACAAACAGGAAACAAC
TGCGAAAACTGTTGAAGAGGAAGGATGCATCGTACGGCGAGCTCCTGCAG
CGTTTGGAAAGGGTGGGCAAGCTGAAAAAGGCAGAAGATCATTTAGTGGC
CCAGCAGACAATGATGAACTCAAAGGGAACCAAGCGAAAAGTGAAAGAAG
CCGAGAACGGCCAACCGGCAGTGTATAAATGGAAGAAGGAGAGAGCAAGC
TGAGTGGGCAAGCTGAAAAAGGCAGAAGATCATTTAGTGGCCCAGCAGAC
AATGATGAACTCAAAGGGAACCAAGCGAAAAGTGAAAGAAGCCGAGAACG
GCCAACCGGCAGTGTATAAATGGAAGAAGGAGAGAGCAAGCTGA
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