mRNA_H-paniculata_contig421.10788.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig421.10788.1 vs. uniprot
Match: D7FNH1_ECTSI (U3 small nucleolar RNA-associated protein 11 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNH1_ECTSI) HSP 1 Score: 398 bits (1023), Expect = 1.160e-134 Identity = 203/247 (82.19%), Postives = 229/247 (92.71%), Query Frame = 3
Query: 63 MSSLRNAVKRVEHKERAQPSSRRRLGLLEKHKDYVLRARNYGAKRDRVKALKLKAAMKNPDEFYFAMHRQKTQNGVHTLDGTESLPHDVIQMLKTQDLGYVHTQRAADERKAAKLRESLHMLEAGSQNKHTIFFDSEKEAKRFDVAKHFDTVPELAGRAFNRPRISTLETAQVTGATNRKQLRKLLKRKDASYGELLQRLERVGKLKKAEDHLVAQQTMMNSKGTKRKVKEAENGQPAVYKWKKERA 803
MSSLRNAVKRVEHKERAQP+SRR+LGLLEKHKDYVLRARNYG KRDR++ALKLKAAMKNPDEFYFAMHR+KT+ GVH LDG E+LPHDV+Q+LKTQDLGYV T R+ADERKAAKLRESLHMLEAG +NKHTIFFDSEKEAK FDVAKHFDTVPELA RAFNRPR TLE AQVTGATNR+QL+K+LK++DASY EL+QRLER K+KKAE HL AQ+ +MNSKGTKRKV+EA++G+PAVY+WKKER+
Sbjct: 1 MSSLRNAVKRVEHKERAQPASRRKLGLLEKHKDYVLRARNYGKKRDRMQALKLKAAMKNPDEFYFAMHRKKTEGGVHVLDGAETLPHDVVQLLKTQDLGYVSTHRSADERKAAKLRESLHMLEAGPRNKHTIFFDSEKEAKEFDVAKHFDTVPELADRAFNRPRKDTLEKAQVTGATNRRQLKKVLKKRDASYSELMQRLERAEKMKKAEVHLEAQRKVMNSKGTKRKVQEAKDGRPAVYRWKKERS 247
BLAST of mRNA_H-paniculata_contig421.10788.1 vs. uniprot
Match: A0A836CK24_9STRA (U3 small nucleolar RNA-associated protein 11 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CK24_9STRA) HSP 1 Score: 291 bits (745), Expect = 1.080e-92 Identity = 145/247 (58.70%), Postives = 191/247 (77.33%), Query Frame = 3
Query: 63 MSSLRNAVKRVEHKERAQPSSRRRLGLLEKHKDYVLRARNYGAKRDRVKALKLKAAMKNPDEFYFAMHRQKTQNGVHTLDGTESLPHDVIQMLKTQDLGYVHTQRAADERKAAKLRESLHMLEAGSQNKHTIFFDSEKEAKRFDVAKHFDTVPELAGRAFNRPRISTLETAQVTGATNRKQLRKLLKRKDASYGELLQRLERVGKLKKAEDHLVAQQTMMNSKGTKRKVKEAENGQPAVYKWKKERA 803
MSSLRNAVKR HKERAQP+SR + GLLEKH DYVLRAR+Y AKRDR+ AL+LKA+++NPDEFYF MH+ KT+ GVH ++G+ SL H+ MLKTQD+ Y+H +RA D +KA +L+ LHML+A QN HT+F ++++ + FD A++FDT PELAGR FNRPR++TLE+ QV GA +R L+K LK++DA+Y E+ R ER K+ +A HL AQ+ +M ++GT KVK AE GQP VYKWK++RA
Sbjct: 1 MSSLRNAVKRKTHKERAQPASRSKFGLLEKHSDYVLRARDYNAKRDRLNALRLKASLRNPDEFYFGMHKAKTKEGVHQVEGSSSLDHETAHMLKTQDMAYIHMKRAVDIKKAERLKAGLHMLDAPPQNTHTVFVKNKRQRRAFDAAEYFDTAPELAGRTFNRPRMATLESKQVLGAESRADLKKALKQRDAAYQEVEAREERARKMTRAAAHLAAQRALMTARGTVTKVKGAEKGQPPVYKWKRQRA 247
BLAST of mRNA_H-paniculata_contig421.10788.1 vs. uniprot
Match: A0A8K1CCZ2_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CCZ2_PYTOL) HSP 1 Score: 248 bits (633), Expect = 6.580e-76 Identity = 132/246 (53.66%), Postives = 175/246 (71.14%), Query Frame = 3
Query: 69 SLRNAVKRVEHKERAQPSSRRRLGLLEKHKDYVLRARNYGAKRDRVKALKLKAAMKNPDEFYFAMHRQKTQNGVHTLDG--TESLPHDVIQMLKTQDLGYVHTQRAADERKAAKLRESLHMLEAGSQNKHTIFFDSEKEAKRFDVAKHFDTVPELAGRAFNRPRISTLETAQVTGATNRKQLRKLLKRKDASYGELLQRLERVGKLKKAEDHLVAQQTMMNSKGTKRKVKEAENGQPAVYKWKKER 800
SLRN VKR EHKER Q R++LGLLEKHKDYVLRAR+Y K+DR++ +KLKAA +NPDEFYF M+ +T++GVH + +E L + +++LKTQDL Y+H +RA D RKA KL + LH ++A NKHT+F DS ++ FDVA HFDT PELA RAFNR R TL+T + T++KQLR L K +DA Y EL RL R K+++ D L ++ + +KG KRKV++ ++ +P VYKWKKER
Sbjct: 2 SLRNVVKRREHKERGQLQERKKLGLLEKHKDYVLRARDYNKKQDRLRTMKLKAAFRNPDEFYFKMNTTRTEDGVHVSENNHSEKLSAEALKVLKTQDLAYLHMKRAVDLRKAEKLTQGLHFIDAPKNNKHTVFVDSSEDLNTFDVATHFDTAPELADRAFNRLRKETLKTTTIQATTDKKQLRALTKERDAVYRELNDRLIRATKIQQMSDRLDLERKVQ-AKGKKRKVQDGDSSRPPVYKWKKER 246
BLAST of mRNA_H-paniculata_contig421.10788.1 vs. uniprot
Match: A0A5D6XJY8_9STRA (U3 small nucleolar RNA-associated protein 11 n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XJY8_9STRA) HSP 1 Score: 243 bits (620), Expect = 6.130e-74 Identity = 127/248 (51.21%), Postives = 173/248 (69.76%), Query Frame = 3
Query: 69 SLRNAVKRVEHKERAQPSSRRRLGLLEKHKDYVLRARNYGAKRDRVKALKLKAAMKNPDEFYFAMHRQKTQNGVHTLDGT----ESLPHDVIQMLKTQDLGYVHTQRAADERKAAKLRESLHMLEAGSQNKHTIFFDSEKEAKRFDVAKHFDTVPELAGRAFNRPRISTLETAQVTGATNRKQLRKLLKRKDASYGELLQRLERVGKLKKAEDHLVAQQTMMNSKGTKRKVKEAENGQPAVYKWKKER 800
SLRN VKR EHKER QP R++LGLLEKHKDYV RAR+Y +K+DR++ ++LKAA +NPDEFYF M+ +T+ GVH D ++L D +++LKTQD+ Y+H +RA D RKA KL LH ++A + NKH +F DSE + +FDVA HFDT PELA RAFNR R+ L+T + ++ K+++K + +D Y EL RLER L + L ++ + +KG K K+K+AENGQPAVY+WKK+R
Sbjct: 2 SLRNVVKRREHKERGQPQERKKLGLLEKHKDYVKRARDYNSKQDRLRTMQLKAAFRNPDEFYFRMNATRTEGGVHVSDNNRLDGKALTADALKVLKTQDVAYLHLKRAVDMRKAEKLNAGLHFIDAPTANKHVVFVDSEAQLAKFDVAAHFDTAPELADRAFNRVRMDALKTLALPAVSSAKEIKKRNRERDGVYRELSDRLERAATLDRMRAKLDLERKVQ-AKGKKMKIKDAENGQPAVYRWKKQR 248
BLAST of mRNA_H-paniculata_contig421.10788.1 vs. uniprot
Match: K3WAT9_GLOUD (U3 small nucleolar RNA-associated protein 11 n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WAT9_GLOUD) HSP 1 Score: 241 bits (614), Expect = 4.810e-73 Identity = 133/249 (53.41%), Postives = 176/249 (70.68%), Query Frame = 3
Query: 63 MSSLRNAVKRVEHKERAQPSSRRRLGLLEKHKDYVLRARNYGAKRDRVKALKLKAAMKNPDEFYFAMHRQKTQNGVH--TLDGTESLPHDVIQMLKTQDLGYVHTQRAADERKAAKLRESLHMLEA-GSQNKHTIFFDSEKEAKRFDVAKHFDTVPELAGRAFNRPRISTLETAQVTGATNRKQLRKLLKRKDASYGELLQRLERVGKLKKAEDHLVAQQTMMNSKGTKRKVKEAENGQPAVYKWKKER 800
MSSLRN VKR EHKER Q R++LGLLEKHKDYV RAR+Y K+D +KAL +KAA +NPDEFYF M+ +T++GVH T + + L + +++LKTQDL Y+H +RA D RKA KL E LH ++A G NKH +F DS+ E + FDVAKHFDTVPE+A RAFNR R TL+T + ++K L+KL +DA Y EL RL+R + + L ++ + +KG K K+K+AE+GQPAVY+WKK+R
Sbjct: 1 MSSLRNVVKRREHKERGQLRERKKLGLLEKHKDYVKRARDYNKKQDHLKALAVKAAFRNPDEFYFRMNSTRTEDGVHVSTHNHHKQLSAEALKVLKTQDLAYLHMKRAVDLRKAEKLNEGLHFIDAAGKDNKHVVFVDSKDEVESFDVAKHFDTVPEIADRAFNRLRKDTLKTVSLPAVQDKKTLKKLGIERDAVYRELNDRLQRASTIDRMRAKLDLERKVQ-AKGKKMKIKDAEDGQPAVYRWKKQR 248
BLAST of mRNA_H-paniculata_contig421.10788.1 vs. uniprot
Match: D0NVW8_PHYIT (U3 small nucleolar RNA-associated protein 11 n=14 Tax=Phytophthora TaxID=4783 RepID=D0NVW8_PHYIT) HSP 1 Score: 233 bits (593), Expect = 6.480e-70 Identity = 133/249 (53.41%), Postives = 169/249 (67.87%), Query Frame = 3
Query: 63 MSSLRNAVKRVEHKERAQPSSRRRLGLLEKHKDYVLRARNYGAKRDRVKALKLKAAMKNPDEFYFAMHRQKTQNGVH--TLDGTESLPHDVIQMLKTQDLGYVHTQRAADERKAAKLRESLHMLEAGSQNKHTIFFDSEKEAKRFDVAKHFDTVPELAGRAFNRPRISTLETAQVTG-ATNRKQLRKLLKRKDASYGELLQRLERVGKLKKAEDHLVAQQTMMNSKGTKRKVKEAENGQPAVYKWKKER 800
MSSLRN VKR EHKER Q RR+LGLLEKHKDYV RAR+Y +K+ R+K L+LKAA++NPDEFY M KT+ GVH T + +S+ + ++ LKTQDL Y+H +RA D RKA +L LH ++A N HT+F D E++ FDVA+HFDT PEL RAFNR R LETA++ A N KQ K+ KDA Y EL RL R KL + L ++ + +KG K+KVK AENG PAVY+WK++R
Sbjct: 1 MSSLRNVVKRREHKERGQLRERRKLGLLEKHKDYVKRARDYNSKQKRLKTLQLKAALRNPDEFYHRMRGTKTEGGVHVSTHNHIKSVETEALRTLKTQDLAYLHMKRAVDLRKAERLNRGLHFVDAPKNNNHTVFVDDEEQVDSFDVAEHFDTAPELVDRAFNRIRKRDLETAELPDLAANPKQKYKMQVEKDAMYRELRDRLARANKLGQMSAKLDLERKVQ-AKGRKKKVKAAENGMPAVYRWKQQR 248
BLAST of mRNA_H-paniculata_contig421.10788.1 vs. uniprot
Match: A0A0P1B0R4_PLAHL (U3 small nucleolar RNA-associated protein 11 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1B0R4_PLAHL) HSP 1 Score: 231 bits (588), Expect = 3.600e-69 Identity = 131/249 (52.61%), Postives = 172/249 (69.08%), Query Frame = 3
Query: 63 MSSLRNAVKRVEHKERAQPSSRRRLGLLEKHKDYVLRARNYGAKRDRVKALKLKAAMKNPDEFYFAMHRQKTQNGVH--TLDGTESLPHDVIQMLKTQDLGYVHTQRAADERKAAKLRESLHMLEAGSQNKHTIFFDSEKEAKRFDVAKHFDTVPELAGRAFNRPRISTLETAQVTG-ATNRKQLRKLLKRKDASYGELLQRLERVGKLKKAEDHLVAQQTMMNSKGTKRKVKEAENGQPAVYKWKKER 800
MSSLRN VKR EHKER Q RR+LGLLEKHKDYV RA++Y +K+ R+K L+LKAA++NPDEFY MH KT+ GVH T + +SL + ++ LKTQDL Y+H +RA D RKA +L LH ++A NKHT+F D +++ + FDVA++FDTVPELA RAFNR R LE ++ A + KQ K+ +DA Y EL RL R K+ + L ++ + +KG KRKVK AENG PAVY+WK++R
Sbjct: 1 MSSLRNVVKRREHKERGQLRDRRKLGLLEKHKDYVKRAQDYNSKQKRLKMLQLKAALRNPDEFYHRMHNNKTEGGVHISTHNHLKSLSTEALRTLKTQDLAYLHLKRAVDLRKAERLNRGLHFVDAPKDNKHTVFVDDKEQVENFDVAQYFDTVPELADRAFNRIRRRDLEMVELPDMAASPKQKYKMQVERDALYRELRDRLTRAKKIGQMSAKLDLERKVQ-AKGRKRKVKAAENGMPAVYRWKQQR 248
BLAST of mRNA_H-paniculata_contig421.10788.1 vs. uniprot
Match: A0A4D9DA46_9STRA (U3 small nucleolar RNA-associated protein 11 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DA46_9STRA) HSP 1 Score: 228 bits (581), Expect = 4.080e-68 Identity = 127/247 (51.42%), Postives = 174/247 (70.45%), Query Frame = 3
Query: 66 SSLRNAVKRVEHKERAQPSSRRRLGLLEKHKDYVLRARNYGAKRDRVKALKLKAAMKNPDEFYFAMHRQKTQNGVHTLDGTE-SLPHDVIQMLKTQDLGYVHTQRAADERKAAKLRESLHMLEAGSQNKHTIFFDSEKEAKRFDVAKHFDTVPELAGRAFNRPRISTLET-AQVTGATNRKQLRKLLKRKDASYGELLQRLERVGKLKKAEDHLVAQQTMMNSKGTKRKVKEAENGQPAVYKWKKER 800
+SLRNA+ R +KER+QP++R++ GLLEKHKDYV RA +Y K + +L+ KAA +NPDEFYFAM + +T+ GVH + E SLPHD I +LKTQD+ YV +RA D +KA KL+ LH L + NKHT+F D+E E + FD AKHF T P L RAFNRP++ TLET V G N +L+K+ K ++ +Y EL +RL+R K+ +H+ ++ +M KG KRKV+EAE+G+PAV+KWK+ER
Sbjct: 4 ASLRNAIPRKTNKERSQPAARKKFGLLEKHKDYVQRANDYKRKSKALASLREKAAFRNPDEFYFAMTKGQTKEGVHRVRPAEASLPHDHIALLKTQDMRYVTMKRALDVKKAEKLQAGLHFLTEEAANKHTVFVDTEAEVETFDPAKHFGTDPALVTRAFNRPKLETLETPGAVLGVANVGELKKVRKAREKAYTELGERLKRSLSFKEVLEHMQVEKNVMG-KGRKRKVQEAEDGKPAVFKWKRER 249
BLAST of mRNA_H-paniculata_contig421.10788.1 vs. uniprot
Match: A0A7S0UKD3_9STRA (U3 small nucleolar RNA-associated protein 11 n=1 Tax=Pseudo-nitzschia delicatissima TaxID=44447 RepID=A0A7S0UKD3_9STRA) HSP 1 Score: 227 bits (578), Expect = 2.080e-67 Identity = 128/269 (47.58%), Postives = 176/269 (65.43%), Query Frame = 3
Query: 63 MSSLRNAVKRVEHKERAQPSSRRRLGLLEKHKDYVLRARNYGAKRDRVKALKLKAAMKNPDEFYFAMHRQKTQNGVH-TLDGTESLPHDVIQMLKTQDLGYVHTQRAADERKAAKLRESLHMLEA------GSQNKHTIFFDSEKEAKRFDVAKHFDTVPELAGRAFNRPRISTLETAQVTGATNRKQL----------------RKLLKRKDASYGELLQRLERVGKLKKAEDHLVAQQTMMNSKGTKRKVKEAENGQPAVYKWKKER 800
MSSLRNAVKR+ HKER+QP R+ LG+LEK KDY RA +Y K DR+KA++ K AMKNPDEFYF MH K +NG H + + L ++++++K QDL YV Q+ D +KA KL+ SLH+L+A GS+ KHTIF S+KEA FDVA+HFDT+PE GRAFNR R +E + +QL +KL K + ++Y E+ R ER K++ AEDHL+ ++ +++SKG KRK+K E+G+PA YKW+++R
Sbjct: 1 MSSLRNAVKRIAHKERSQPLDRQHLGILEKKKDYKQRAIDYHRKEDRIKAMQQKVAMKNPDEFYFGMHNSKVENGKHRSSEDYRVLDPELVKVMKDQDLSYVRMQKQKDIKKAEKLQASLHLLDADNEDAVGSKRKHTIFVKSKKEASEFDVAQHFDTIPEFEGRAFNRLRKRDIEKLSKNNTSGERQLTTEELHKLRKTEQKLAKKLAKARASAYREMESRRERADKMRTAEDHLITEK-LVSSKGRKRKLKTGEDGKPAQYKWRRKR 268
BLAST of mRNA_H-paniculata_contig421.10788.1 vs. uniprot
Match: A0A3R7K0P1_9STRA (U3 small nucleolar RNA-associated protein 11 n=4 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7K0P1_9STRA) HSP 1 Score: 226 bits (577), Expect = 3.020e-67 Identity = 129/250 (51.60%), Postives = 169/250 (67.60%), Query Frame = 3
Query: 60 SMSSLRNAVKRVEHKERAQPSSRRRLGLLEKHKDYVLRARNYGAKRDRVKALKLKAAMKNPDEFYFAMHRQKTQNGVH--TLDGTESLPHDVIQMLKTQDLGYVHTQRAADERKAAKLRESLHMLEAGSQNKHTIFFDSEKEAKRFDVAKHFDTVPELAGRAFNRPRISTLETAQVTG-ATNRKQLRKLLKRKDASYGELLQRLERVGKLKKAEDHLVAQQTMMNSKGTKRKVKEAENGQPAVYKWKKER 800
SMSSLRN VKR EHKER Q RR+LGLLEKHKDYV RA++Y K+ ++ L+LKA+M+NPDEFY+ M KT+ GVH T + + L + ++ LKTQDL Y+H +RA D RKA KL LH ++ NKHT+F D + + +FDVA+HFDT PELA RAFNR R + LET ++ A + KQ K+ KDA Y EL RLER K+ + L ++ + +KG K KVK AE+G PAVY+WK++R
Sbjct: 21 SMSSLRNVVKRREHKERGQLRERRKLGLLEKHKDYVKRAKDYNQKQKHLRNLQLKASMRNPDEFYYKMIHGKTEGGVHISTHNHAKQLNAEALRTLKTQDLAYLHMKRAVDLRKAEKLNRGLHFIDTPKNNKHTVFVDEDDDVNKFDVAEHFDTAPELADRAFNRLRKADLETMELPDLAADPKQKYKMQVEKDAMYRELRDRLERAKKIGRMSAKLDLERKVQ-AKGKKMKVKGAEDGMPAVYRWKQQR 269 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig421.10788.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig421.10788.1 >prot_H-paniculata_contig421.10788.1 ID=prot_H-paniculata_contig421.10788.1|Name=mRNA_H-paniculata_contig421.10788.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=249bp MSSLRNAVKRVEHKERAQPSSRRRLGLLEKHKDYVLRARNYGAKRDRVKAback to top mRNA from alignment at H-paniculata_contig421:23249..28107- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig421.10788.1 ID=mRNA_H-paniculata_contig421.10788.1|Name=mRNA_H-paniculata_contig421.10788.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4859bp|location=Sequence derived from alignment at H-paniculata_contig421:23249..28107- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig421:23249..28107- >mRNA_H-paniculata_contig421.10788.1 ID=mRNA_H-paniculata_contig421.10788.1|Name=mRNA_H-paniculata_contig421.10788.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1494bp|location=Sequence derived from alignment at H-paniculata_contig421:23249..28107- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |