mRNA_H-paniculata_contig42087.10783.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig42087.10783.1
Unique NamemRNA_H-paniculata_contig42087.10783.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig42087.10783.1 vs. uniprot
Match: A0A6H5JKS3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKS3_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 2.960e-11
Identity = 36/74 (48.65%), Postives = 48/74 (64.86%), Query Frame = 1 
Query:    1 MIESAGLSAQIQANEIFPSVKIPSGDSLWSLRNLWACHALNCTATRANEGCLSPYELWYGKVPQG--MLPFLKP 216
            +I  A L+++IQA E+FP    P+  +LW+     ACH LNCTAT AN G  SPYE+++GK P    + PFLKP
Sbjct:  386 IISDAALASRIQAKEMFPDA--PTDPALWAEAIACACHQLNCTATTANPGDKSPYEMFHGKPPPAGSVYPFLKP 457
[Close]
BLAST of mRNA_H-paniculata_contig42087.10783.1 vs. uniprot
Match: A0A6H5L175_9PHAE (Uncharacterized protein n=9 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L175_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 3.030e-11
Identity = 36/74 (48.65%), Postives = 48/74 (64.86%), Query Frame = 1 
Query:    1 MIESAGLSAQIQANEIFPSVKIPSGDSLWSLRNLWACHALNCTATRANEGCLSPYELWYGKVPQG--MLPFLKP 216
            +I  A L+++IQA E+FP    P+  +LW+     ACH LNCTAT AN G  SPYE+++GK P    + PFLKP
Sbjct:  868 IISDAALASRIQAKEMFPDA--PTDPALWAEAIACACHQLNCTATTANPGDKSPYEMFHGKPPPAGSVYPFLKP 939
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BLAST of mRNA_H-paniculata_contig42087.10783.1 vs. uniprot
Match: A0A6H5K9K6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9K6_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 2.360e-9
Identity = 31/63 (49.21%), Postives = 42/63 (66.67%), Query Frame = 1 
Query:    1 MIESAGLSAQIQANEIFPSVKIPSGDSLWSLRNLWACHALNCTATRANEGCLSPYELWYGKVP 189
            +I  A L+++IQA E+FP    P+  +LW+     ACH LNCTAT AN G  SPYE+++GK P
Sbjct:  129 IISDAALASRIQAKEMFPDA--PTDPALWAEAIACACHQLNCTATTANPGDKSPYEMFHGKPP 189
[Close]
BLAST of mRNA_H-paniculata_contig42087.10783.1 vs. uniprot
Match: A0A6H5JV95_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV95_9PHAE)

HSP 1 Score: 62.4 bits (150), Expect = 1.510e-8
Identity = 41/114 (35.96%), Postives = 63/114 (55.26%), Query Frame = 1 
Query:    1 MIESAGLSAQIQANEIFPSVKIPSGDSLWSLRNLWACHALNCTATRANEGCLSPYELWYGKVP--QGMLPFLKPWICP--QEAL*QTKAESCTLLLHSSFSQPSE*FCTRVFEE 330
            +I  A L+++IQA ++FP  +   G  LW+     ACH LNCTAT++NEG  S YE+++   P  +   PFLKP +    ++A  Q K E     L  +++ P +  C R+  E
Sbjct:  132 LITGAALASRIQATQLFPDAQNHPG--LWAEAISCACHQLNCTATKSNEGDKSAYEMFHDSPPPVRSTYPFLKPAVFKSRRKAKSQIKGEK-GWYLGPAYNHPRD--CVRMLTE 240
[Close]
BLAST of mRNA_H-paniculata_contig42087.10783.1 vs. uniprot
Match: A0A6H5JIN8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIN8_9PHAE)

HSP 1 Score: 62.4 bits (150), Expect = 1.770e-8
Identity = 32/74 (43.24%), Postives = 45/74 (60.81%), Query Frame = 1 
Query:    1 MIESAGLSAQIQANEIFPSVKIPSGDSLWSLRNLWACHALNCTATRANEGCLSPYELWYGKVPQ--GMLPFLKP 216
            +I  A L+++IQA ++FP    P+   LW+     ACH LNCTAT++NEG  S YE+++   P      PFLKP
Sbjct:  508 LITDAALASRIQATQLFPDA--PNHPGLWAEAISCACHQLNCTATKSNEGDKSAYEMFHDSPPPVGSTYPFLKP 579
[Close]
BLAST of mRNA_H-paniculata_contig42087.10783.1 vs. uniprot
Match: A0A6H5KAM7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAM7_9PHAE)

HSP 1 Score: 62.4 bits (150), Expect = 1.790e-8
Identity = 32/74 (43.24%), Postives = 45/74 (60.81%), Query Frame = 1 
Query:    1 MIESAGLSAQIQANEIFPSVKIPSGDSLWSLRNLWACHALNCTATRANEGCLSPYELWYGKVPQ--GMLPFLKP 216
            +I  A L+++IQA ++FP    P+   LW+     ACH LNCTAT++NEG  S YE+++   P      PFLKP
Sbjct:  131 LITDAALASRIQATQLFPDA--PNHPGLWAEAISCACHQLNCTATKSNEGDKSAYEMFHDSPPPVGSTYPFLKP 202
[Close]
BLAST of mRNA_H-paniculata_contig42087.10783.1 vs. uniprot
Match: A0A6H5JM30_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM30_9PHAE)

HSP 1 Score: 62.4 bits (150), Expect = 1.930e-8
Identity = 32/74 (43.24%), Postives = 45/74 (60.81%), Query Frame = 1 
Query:    1 MIESAGLSAQIQANEIFPSVKIPSGDSLWSLRNLWACHALNCTATRANEGCLSPYELWYGKVPQ--GMLPFLKP 216
            +I  A L+++IQA ++FP    P+   LW+     ACH LNCTAT++NEG  S YE+++   P      PFLKP
Sbjct:  758 LITDAALASRIQATQLFPDA--PNHPGLWAEAISCACHQLNCTATKSNEGDKSAYEMFHDSPPPVGSTYPFLKP 829
[Close]
BLAST of mRNA_H-paniculata_contig42087.10783.1 vs. uniprot
Match: A0A6H5K293_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K293_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 4.660e-8
Identity = 32/74 (43.24%), Postives = 45/74 (60.81%), Query Frame = 1 
Query:    1 MIESAGLSAQIQANEIFPSVKIPSGDSLWSLRNLWACHALNCTATRANEGCLSPYELWYGKVPQ--GMLPFLKP 216
            +I  A L+++IQA ++FP    P+   LW+     ACH LNCTAT++NEG  S YE+++   P      PFLKP
Sbjct:  136 LITDAALASRIQATQLFPDA--PNHPRLWAEAISCACHQLNCTATKSNEGDKSAYEMFHDPPPPVGSTSPFLKP 207
[Close]
BLAST of mRNA_H-paniculata_contig42087.10783.1 vs. uniprot
Match: A0A6H5JZ88_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ88_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 5.790e-8
Identity = 32/74 (43.24%), Postives = 45/74 (60.81%), Query Frame = 1 
Query:    1 MIESAGLSAQIQANEIFPSVKIPSGDSLWSLRNLWACHALNCTATRANEGCLSPYELWYGKVPQG--MLPFLKP 216
            +I  A L+++IQA ++FP    P+   LW+     ACH LNCTAT++NEG  S YE+++   P      PFLKP
Sbjct:  304 LITDAALASRIQATQLFPDA--PNHPGLWAEAISCACHQLNCTATKSNEGDNSAYEMFHDSSPPVGFTYPFLKP 375
[Close]
BLAST of mRNA_H-paniculata_contig42087.10783.1 vs. uniprot
Match: A0A6H5JAQ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAQ2_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 9.010e-8
Identity = 33/74 (44.59%), Postives = 46/74 (62.16%), Query Frame = 1 
Query:    1 MIESAGLSAQIQANEIFPSVKIPSGDSLWSLRNLWACHALNCTATRANEGCLSPYELWYGKV-PQGML-PFLKP 216
            +I  A L+++IQA ++FP    P+   LW+     ACH LNCTAT++NEG  S YE+++    P G   PFLKP
Sbjct:  810 LITDAALASRIQATQLFPDA--PNHPGLWAEAISCACHQLNCTATKSNEGDKSAYEMFHNSPSPVGSTYPFLKP 881
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig42087.10783.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A6H5JKS3_9PHAE2.960e-1148.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L175_9PHAE3.030e-1148.65Uncharacterized protein n=9 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K9K6_9PHAE2.360e-949.21Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JV95_9PHAE1.510e-835.96Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5JIN8_9PHAE1.770e-843.24Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KAM7_9PHAE1.790e-843.24Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JM30_9PHAE1.930e-843.24Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5K293_9PHAE4.660e-843.24Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JZ88_9PHAE5.790e-843.24Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5JAQ2_9PHAE9.010e-844.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig42087contigH-paniculata_contig42087:70..524 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size455
Cds size243
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930280.1627598-CDS-H-paniculata_contig42087:69..3121622930280.1627598-CDS-H-paniculata_contig42087:69..312Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig42087 70..312 +
1691481223.1781006-CDS-H-paniculata_contig42087:69..3121691481223.1781006-CDS-H-paniculata_contig42087:69..312Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig42087 70..312 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930280.1871486-UTR-H-paniculata_contig42087:312..5241622930280.1871486-UTR-H-paniculata_contig42087:312..524Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig42087 313..524 +
1691481223.1915975-UTR-H-paniculata_contig42087:312..5241691481223.1915975-UTR-H-paniculata_contig42087:312..524Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig42087 313..524 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig42087.10783.1prot_H-paniculata_contig42087.10783.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig42087 70..312 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig42087.10783.1

>prot_H-paniculata_contig42087.10783.1 ID=prot_H-paniculata_contig42087.10783.1|Name=mRNA_H-paniculata_contig42087.10783.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=81bp
MIESAGLSAQIQANEIFPSVKIPSGDSLWSLRNLWACHALNCTATRANEG
CLSPYELWYGKVPQGMLPFLKPWICPQEAL*
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mRNA from alignment at H-paniculata_contig42087:70..524+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig42087.10783.1 ID=mRNA_H-paniculata_contig42087.10783.1|Name=mRNA_H-paniculata_contig42087.10783.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=455bp|location=Sequence derived from alignment at H-paniculata_contig42087:70..524+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATCGAGTCGGCTGGTTTGTCTGCTCAGATTCAGGCCAATGAAATTTT
CCCTAGTGTGAAGATTCCGTCTGGTGATTCGTTGTGGTCGTTACGAAATC
TCTGGGCGTGTCACGCTCTGAACTGTACTGCGACAAGGGCGAATGAAGGC
TGCTTGTCGCCGTACGAATTATGGTATGGGAAGGTACCGCAAGGTATGCT
TCCATTCCTAAAACCGTGGATATGTCCACAGGAAGCGCTCTAACAAACTA
AAGCCGAAAGCTGTACGTTGTTATTACATAGCTCCTTCTCCCAACCGTCC
GAGTGATTCTGTACGCGTGTTTTTGAAGAGTGGTGCTCTTATAGACAGTA
GAGATGCCACTTGGCAATGCGTTTCACCCGTCCCTACCACTGTACCAACG
ATTTCTCTGCCAGATAATGGGGAGAATTCAGGAGGTGGGGAGGGAGGGAG
AAAGT
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Coding sequence (CDS) from alignment at H-paniculata_contig42087:70..524+

>mRNA_H-paniculata_contig42087.10783.1 ID=mRNA_H-paniculata_contig42087.10783.1|Name=mRNA_H-paniculata_contig42087.10783.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=486bp|location=Sequence derived from alignment at H-paniculata_contig42087:70..524+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATCGAGTCGGCTGGTTTGTCTGCTCAGATTCAGGCCAATGAAATTTT
CCCTAGTGTGAAGATTCCGTCTGGTGATTCGTTGTGGTCGTTACGAAATC
TCTGGGCGTGTCACGCTCTGAACTGTACTGCGACAAGGGCGAATGAAGGC
TGCTTGTCGCCGTACGAATTATGGTATGGGAAGGTACCGCAAGGTATGCT
TCCATTCCTAAAACCGTGGATATGTCCACAGGAAGCGCTCTAAATGATCG
AGTCGGCTGGTTTGTCTGCTCAGATTCAGGCCAATGAAATTTTCCCTAGT
GTGAAGATTCCGTCTGGTGATTCGTTGTGGTCGTTACGAAATCTCTGGGC
GTGTCACGCTCTGAACTGTACTGCGACAAGGGCGAATGAAGGCTGCTTGT
CGCCGTACGAATTATGGTATGGGAAGGTACCGCAAGGTATGCTTCCATTC
CTAAAACCGTGGATATGTCCACAGGAAGCGCTCTAA
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