mRNA_H-paniculata_contig42052.10780.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-paniculata_contig42052.10780.1
Unique Name	mRNA_H-paniculata_contig42052.10780.1
Type	mRNA
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)

Homology

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BLAST of mRNA_H-paniculata_contig42052.10780.1 vs. uniprot
Match: A0A6H5K198_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K198_9PHAE)

HSP 1 Score: 103 bits (257), Expect = 1.990e-24
Identity = 54/100 (54.00%), Postives = 68/100 (68.00%), Query Frame = -1

Query:    1 HAVTRLLKRLGIKSTVEDGDPFTADRDYRMDIVVPAGEVRDASINAFRVKGLPIDVTHADPQSTGHLERGSAAIDGSASAISEARKSAHYARRGHVSFDE 300
            +A++R L  L +K  VE G PFT +R+  MDIV+  G + +AS   +R KG+ +DVTHADPQ+  HL  GSA  DG A+  SEARK  HYAR GHVSFDE
Sbjct:  137 YALSRALNGLRVKHDVESGAPFTGERNLSMDIVIRPGALTNASSPGYRNKGILLDVTHADPQAQVHLRNGSATSDGIAAQASEARKRQHYARPGHVSFDE 236

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BLAST of mRNA_H-paniculata_contig42052.10780.1 vs. uniprot
Match: A0A6H5JH58_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH58_9PHAE)

HSP 1 Score: 105 bits (261), Expect = 3.710e-24
Identity = 52/100 (52.00%), Postives = 70/100 (70.00%), Query Frame = -1

Query:    1 HAVTRLLKRLGIKSTVEDGDPFTADRDYRMDIVVPAGEVRDASINAFRVKGLPIDVTHADPQSTGHLERGSAAIDGSASAISEARKSAHYARRGHVSFDE 300
            +A+++ L  + +K  VE G PFT  R+  MDIV+  G +R+A+ + +R KG+ +DVTHADPQ+  HL  GSA  DG+A+  SEARK  HYAR GHVSFDE
Sbjct: 1981 YAISKALNGIAVKHDVESGAPFTGARNLSMDIVIRPGALRNAASSVYRNKGILLDVTHADPQAQVHLRNGSATSDGTAAQASEARKRQHYARPGHVSFDE 2080

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BLAST of mRNA_H-paniculata_contig42052.10780.1 vs. uniprot
Match: A0A6H5KDZ4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDZ4_9PHAE)

HSP 1 Score: 103 bits (257), Expect = 3.920e-24
Identity = 54/100 (54.00%), Postives = 68/100 (68.00%), Query Frame = -1

Query:    1 HAVTRLLKRLGIKSTVEDGDPFTADRDYRMDIVVPAGEVRDASINAFRVKGLPIDVTHADPQSTGHLERGSAAIDGSASAISEARKSAHYARRGHVSFDE 300
            +A++R L  L +K  VE G PFT +R+  MDIV+  G + +AS   +R KG+ +DVTHADPQ+  HL  GSA  DG A+  SEARK  HYAR GHVSFDE
Sbjct:  191 YALSRALNGLRVKHDVESGAPFTGERNLSMDIVIRPGALTNASSPGYRNKGILLDVTHADPQAQVHLRNGSATSDGIAAQASEARKRQHYARPGHVSFDE 290

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BLAST of mRNA_H-paniculata_contig42052.10780.1 vs. uniprot
Match: A0A6H5KEX1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEX1_9PHAE)

HSP 1 Score: 103 bits (257), Expect = 4.660e-24
Identity = 54/100 (54.00%), Postives = 68/100 (68.00%), Query Frame = -1

Query:    1 HAVTRLLKRLGIKSTVEDGDPFTADRDYRMDIVVPAGEVRDASINAFRVKGLPIDVTHADPQSTGHLERGSAAIDGSASAISEARKSAHYARRGHVSFDE 300
            +A++R L  L +K  VE G PFT +R+  MDIV+  G + +AS   +R KG+ +DVTHADPQ+  HL  GSA  DG A+  SEARK  HYAR GHVSFDE
Sbjct:  114 YALSRALNGLRVKHDVESGAPFTGERNLSMDIVIRPGALTNASSPGYRNKGILLDVTHADPQAQVHLRNGSATSDGIAAQASEARKRQHYARPGHVSFDE 213

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BLAST of mRNA_H-paniculata_contig42052.10780.1 vs. uniprot
Match: A0A6H5LLI3_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LLI3_9PHAE)

HSP 1 Score: 103 bits (257), Expect = 7.970e-24
Identity = 54/100 (54.00%), Postives = 68/100 (68.00%), Query Frame = -1

Query:    1 HAVTRLLKRLGIKSTVEDGDPFTADRDYRMDIVVPAGEVRDASINAFRVKGLPIDVTHADPQSTGHLERGSAAIDGSASAISEARKSAHYARRGHVSFDE 300
            +A++R L  L +K  VE G PFT +R+  MDIV+  G + +AS   +R KG+ +DVTHADPQ+  HL  GSA  DG A+  SEARK  HYAR GHVSFDE
Sbjct:  280 YALSRALNGLRVKHDVESGAPFTGERNLSMDIVIRPGALTNASSPGYRNKGILLDVTHADPQAQVHLRNGSATSDGIAAQASEARKRQHYARPGHVSFDE 379

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BLAST of mRNA_H-paniculata_contig42052.10780.1 vs. uniprot
Match: A0A6H5K195_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K195_9PHAE)

HSP 1 Score: 103 bits (258), Expect = 9.230e-24
Identity = 54/100 (54.00%), Postives = 68/100 (68.00%), Query Frame = -1

Query:    1 HAVTRLLKRLGIKSTVEDGDPFTADRDYRMDIVVPAGEVRDASINAFRVKGLPIDVTHADPQSTGHLERGSAAIDGSASAISEARKSAHYARRGHVSFDE 300
            +A++R L  L +K  VE G PFT +R+  MDIV+  G + +AS   +R KG+ +DVTHADPQ+  HL  GSA  DG A+  SEARK  HYAR GHVSFDE
Sbjct:  993 YALSRALNGLRVKHDVESGAPFTGERNLSMDIVIRPGALTNASSPGYRKKGILLDVTHADPQAQVHLRNGSATSDGIAAQASEARKRQHYARPGHVSFDE 1092

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BLAST of mRNA_H-paniculata_contig42052.10780.1 vs. uniprot
Match: A0A6H5JTC7_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTC7_9PHAE)

HSP 1 Score: 103 bits (257), Expect = 1.240e-23
Identity = 53/100 (53.00%), Postives = 69/100 (69.00%), Query Frame = -1

Query:    1 HAVTRLLKRLGIKSTVEDGDPFTADRDYRMDIVVPAGEVRDASINAFRVKGLPIDVTHADPQSTGHLERGSAAIDGSASAISEARKSAHYARRGHVSFDE 300
            +A++R L  L +K  VE G PFT +R+  MD+V+  G + +AS   +R KG+ +DVTHADPQ+  HL  GSA  DG+A+  SEARK  HYAR GHVSFDE
Sbjct:  667 YALSRALNGLRVKHDVESGAPFTGERNLSMDLVIRPGALTNASSPGYRNKGVLLDVTHADPQAQVHLRNGSATSDGTAAQASEARKRQHYARPGHVSFDE 766

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BLAST of mRNA_H-paniculata_contig42052.10780.1 vs. uniprot
Match: A0A6H5JUN7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUN7_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 1.490e-23
Identity = 53/100 (53.00%), Postives = 67/100 (67.00%), Query Frame = -1

Query:    1 HAVTRLLKRLGIKSTVEDGDPFTADRDYRMDIVVPAGEVRDASINAFRVKGLPIDVTHADPQSTGHLERGSAAIDGSASAISEARKSAHYARRGHVSFDE 300
            +A++R    L +K  VE G PFT +R+  MDIV+  G + +AS   +R KG+ +DVTHADPQ+  HL  GSA  DG A+  SEARK  HYAR GHVSFDE
Sbjct:  123 YALSRACNGLRVKHDVESGAPFTGERNLSMDIVIRPGALTNASSPGYRNKGILLDVTHADPQAQVHLRNGSATSDGIAAQASEARKRQHYARPGHVSFDE 222

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BLAST of mRNA_H-paniculata_contig42052.10780.1 vs. uniprot
Match: A0A6H5JS53_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS53_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 3.180e-23
Identity = 54/96 (56.25%), Postives = 64/96 (66.67%), Query Frame = -1

Query:    1 RLLKRLGIKSTVEDGDPFTADRDYRMDIVVPAGEVRDASINAFRVKGLPIDVTHADPQSTGHLERGSAAIDGSASAISEARKSAHYARRGHVSFDE 288
            R L  LG+K  VE G PFT  R+  MDIV+  G + +AS   +R KG+ +DVTHADPQ+  HL  GSA  DG A+  SEARK  HYAR GHVSFDE
Sbjct:  247 RALNGLGVKHDVESGAPFTGARNLSMDIVIRPGALTNASSPGYRNKGILLDVTHADPQAQVHLRNGSATSDGIAAQASEARKRQHYARPGHVSFDE 342

[Close]

BLAST of mRNA_H-paniculata_contig42052.10780.1 vs. uniprot
Match: A0A6H5JHZ7_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHZ7_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 5.670e-23
Identity = 53/100 (53.00%), Postives = 67/100 (67.00%), Query Frame = -1

Query:    1 HAVTRLLKRLGIKSTVEDGDPFTADRDYRMDIVVPAGEVRDASINAFRVKGLPIDVTHADPQSTGHLERGSAAIDGSASAISEARKSAHYARRGHVSFDE 300
            +A++R L  L +K  VE G PFT +R+  MDIV+  G + +AS   +R KG  +DVTHADP +  HL  GSA  DG+A+  SEARK  HYAR GHVSFDE
Sbjct:  512 YALSRALNGLRVKHDVESGAPFTGERNLSMDIVIRPGALTNASSPGYRNKGTLLDVTHADPHAQVHLRNGSATSDGTAAQASEARKRQHYARPGHVSFDE 611

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig42052.10780.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig42052.10780.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16


Match Name	E-value	Identity	Description
A0A6H5K198_9PHAE	1.990e-24	54.00	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JH58_9PHAE	3.710e-24	52.00	Reverse transcriptase domain-containing protein n=...	[more]
A0A6H5KDZ4_9PHAE	3.920e-24	54.00	Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KEX1_9PHAE	4.660e-24	54.00	Uncharacterized protein (Fragment) n=1 Tax=Ectocar...	[more]
A0A6H5LLI3_9PHAE	7.970e-24	54.00	Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K195_9PHAE	9.230e-24	54.00	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JTC7_9PHAE	1.240e-23	53.00	Reverse transcriptase domain-containing protein n=...	[more]
A0A6H5JUN7_9PHAE	1.490e-23	53.00	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JS53_9PHAE	3.180e-23	56.25	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JHZ7_9PHAE	5.670e-23	53.00	Reverse transcriptase domain-containing protein (F...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig42052	contig	H-paniculata_contig42052:41..343 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Exons	1
Model size	303
Cds size	303
Stop	1
Start	0

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622930279.730546-CDS-H-paniculata_contig42052:40..343	1622930279.730546-CDS-H-paniculata_contig42052:40..343	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig42052 41..343 +
1691481222.94374-CDS-H-paniculata_contig42052:40..343	1691481222.94374-CDS-H-paniculata_contig42052:40..343	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig42052 41..343 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig42052.10780.1	prot_H-paniculata_contig42052.10780.1	Halopteris paniculata Hal_grac_a_UBK monoicous	polypeptide	H-paniculata_contig42052 41..343 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-paniculata_contig42052:41..343+
coding sequence from alignment at H-paniculata_contig42052:41..343+

protein sequence of mRNA_H-paniculata_contig42052.10780.1

>prot_H-paniculata_contig42052.10780.1 ID=prot_H-paniculata_contig42052.10780.1|Name=mRNA_H-paniculata_contig42052.10780.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=101bp
LVEGHVSSSSVVRAFARLGNGGGRAVDSSAPALEVPCRLGICVRDVDREA
LDAEGVDGSISDLSCRDDDVHSVVPVRRKRVSVLYRALDAQSLKESCDRV
*

mRNA from alignment at H-paniculata_contig42052:41..343+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-paniculata_contig42052.10780.1 ID=mRNA_H-paniculata_contig42052.10780.1|Name=mRNA_H-paniculata_contig42052.10780.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=303bp|location=Sequence derived from alignment at H-paniculata_contig42052:41..343+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTCGTCGAAGGACACGTGTCCTCTTCGAGCGTAGTGCGCGCTTTTGCGCG
CCTCGGAAATGGCGGAGGCCGAGCCGTCGATAGCAGCGCTCCCGCGCTCG
AGGTGCCCTGTCGACTGGGGATCTGCGTGCGTGACGTCGATCGGGAGGCC
CTTGACGCGGAAGGCGTTGATGGAAGCATCTCGGACCTCTCCTGCCGGGA
CGACGATGTCCATTCGGTAGTCCCGGTCCGCCGTAAACGGGTCTCCGTCC
TCTACCGTGCTCTTGATGCCCAGTCGCTTAAGGAGTCGTGTGACCGCGTG
TAG

Coding sequence (CDS) from alignment at H-paniculata_contig42052:41..343+

>mRNA_H-paniculata_contig42052.10780.1 ID=mRNA_H-paniculata_contig42052.10780.1|Name=mRNA_H-paniculata_contig42052.10780.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=606bp|location=Sequence derived from alignment at H-paniculata_contig42052:41..343+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTCGTCGAAGGACACGTGTCCTCTTCGAGCGTAGTGCGCGCTTTTGCGCG
CCTCGGAAATGGCGGAGGCCGAGCCGTCGATAGCAGCGCTCCCGCGCTCG
AGGTGCCCTGTCGACTGGGGATCTGCGTGCGTGACGTCGATCGGGAGGCC
CTTGACGCGGAAGGCGTTGATGGAAGCATCTCGGACCTCTCCTGCCGGGA
CGACGATGTCCATTCGGTAGTCCCGGTCCGCCGTAAACGGGTCTCCGTCC
TCTACCGTGCTCTTGATGCCCAGTCGCTTAAGGAGTCGTGTGACCGCGTG
TAGCTCGTCGAAGGACACGTGTCCTCTTCGAGCGTAGTGCGCGCTTTTGC
GCGCCTCGGAAATGGCGGAGGCCGAGCCGTCGATAGCAGCGCTCCCGCGC
TCGAGGTGCCCTGTCGACTGGGGATCTGCGTGCGTGACGTCGATCGGGAG
GCCCTTGACGCGGAAGGCGTTGATGGAAGCATCTCGGACCTCTCCTGCCG
GGACGACGATGTCCATTCGGTAGTCCCGGTCCGCCGTAAACGGGTCTCCG
TCCTCTACCGTGCTCTTGATGCCCAGTCGCTTAAGGAGTCGTGTGACCGC
GTGTAG