mRNA_H-paniculata_contig42043.10779.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig42043.10779.1
Unique NamemRNA_H-paniculata_contig42043.10779.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig42043.10779.1 vs. uniprot
Match: D8LQJ6_ECTSI (Rhomboid domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQJ6_ECTSI)

HSP 1 Score: 112 bits (280), Expect = 2.900e-28
Identity = 55/78 (70.51%), Postives = 66/78 (84.62%), Query Frame = 1
Query:    1 VGFSGVLFTLALMESHRSTTLYRSIFGFIQVPTKLYPWALLV---VILPGISFMGHLSGILVGVLHVYGYTKPLLPSP 225
            VGFSGV+FTLALMES+RST   RS+FG ++VPT++YPW LLV   V +  ISF+GHLSGILVGV+HVYG TKPL+PSP
Sbjct:  131 VGFSGVIFTLALMESYRSTQPTRSVFGMMRVPTRMYPWVLLVLLSVFMRDISFVGHLSGILVGVMHVYGLTKPLMPSP 208          
BLAST of mRNA_H-paniculata_contig42043.10779.1 vs. uniprot
Match: A0A835Z1X9_9STRA (Rhomboid domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1X9_9STRA)

HSP 1 Score: 100 bits (250), Expect = 6.540e-24
Identity = 48/78 (61.54%), Postives = 63/78 (80.77%), Query Frame = 1
Query:    1 VGFSGVLFTLALMESHRSTTLYRSIFGFIQVPTKLYPWALLVVI---LPG-ISFMGHLSGILVGVLHVYGYTKPLLPS 222
            VGFSGV+FTLA+ME+ RS+  YR + G ++VPTKLYPWAL++V+   + G +SFMGHL+G +VG+LH YG T PLLPS
Sbjct:  132 VGFSGVIFTLAVMEAQRSSEPYRMLMGMVKVPTKLYPWALMIVLQVMMKGEVSFMGHLAGAIVGILHTYGLTAPLLPS 209          
BLAST of mRNA_H-paniculata_contig42043.10779.1 vs. uniprot
Match: A0A812V7G2_9DINO (RBL15 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812V7G2_9DINO)

HSP 1 Score: 92.0 bits (227), Expect = 3.180e-20
Identity = 48/77 (62.34%), Postives = 58/77 (75.32%), Query Frame = 1
Query:    1 VGFSGVLFTLALMESHRSTTLYRSIFGFIQVPTKLYPWALLVVI---LPGISFMGHLSGILVGVLHVYGYTKPLLPS 222
            VGFSGVLFTLA+ E+  S    RS+FG  +VPT+LYPW LLV++   +P ISF+GHLSG+LVGVLHV G    LLPS
Sbjct:  126 VGFSGVLFTLAVEEASLSPNPTRSVFGLFRVPTRLYPWVLLVLLQFAIPNISFLGHLSGLLVGVLHVGGLLAWLLPS 202          
BLAST of mRNA_H-paniculata_contig42043.10779.1 vs. uniprot
Match: A0A7S0K707_CAFRO (Hypothetical protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A7S0K707_CAFRO)

HSP 1 Score: 92.0 bits (227), Expect = 4.500e-20
Identity = 48/77 (62.34%), Postives = 58/77 (75.32%), Query Frame = 1
Query:    1 VGFSGVLFTLALMESHRSTTLYRSIFGFIQVPTKLYPWALLVVI---LPGISFMGHLSGILVGVLHVYGYTKPLLPS 222
            VGFSGVLFTLA+ E+  S    RS+FG  +VPT+LYPW LLV++   +P ISF+GHLSG+LVGVLHV G    LLPS
Sbjct:  126 VGFSGVLFTLAVEEASLSPNPTRSVFGLFRVPTRLYPWVLLVLLQFAIPNISFLGHLSGLLVGVLHVGGLLAWLLPS 202          
BLAST of mRNA_H-paniculata_contig42043.10779.1 vs. uniprot
Match: A0A7S2GX31_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2GX31_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 4.740e-20
Identity = 48/83 (57.83%), Postives = 63/83 (75.90%), Query Frame = 1
Query:    1 VGFSGVLFTLALMESHRSTTLYRSIFGFIQVPTKLYPWALLVVI---LPGISFMGHLSGILVGVLHVYGYTKP-LLPSPGGLK 237
            VGFSGV+F L+++ES+ +    RS+FGFI+VP+ LYPWALLVV+   +P ISF+GHLSGILVG L +YG   P +LPS   L+
Sbjct:  128 VGFSGVIFQLSVLESNINLDRTRSVFGFIKVPSYLYPWALLVVLQVLIPAISFLGHLSGILVGTLQLYGILDPFVLPSDDYLR 210          
BLAST of mRNA_H-paniculata_contig42043.10779.1 vs. uniprot
Match: A0A6U6ILB2_9STRA (Hypothetical protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A6U6ILB2_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 8.200e-19
Identity = 42/83 (50.60%), Postives = 60/83 (72.29%), Query Frame = 1
Query:    1 VGFSGVLFTLALMESHRSTTLYRSIFGFIQVPTKLYPWALLVVI---LPGISFMGHLSGILVGVLHVYGYTKPLLPSPGGLKI 240
            VGFSGV+F L+++E++ +    RS+FGF +VP  LYPWALL+ I   LP +SF+GHLSGI VG L +YG  + ++P+   LK+
Sbjct:  129 VGFSGVIFQLSVLEANLNPNSARSVFGFFRVPAYLYPWALLIAIQFILPQVSFVGHLSGIFVGTLQLYGVLEIIIPTDPYLKV 211          
BLAST of mRNA_H-paniculata_contig42043.10779.1 vs. uniprot
Match: W7TU50_9STRA (Peptidase S54, rhomboid domain protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TU50_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 8.990e-19
Identity = 47/82 (57.32%), Postives = 56/82 (68.29%), Query Frame = 1
Query:    4 GFSGVLFTLALMESHRST-TLYRSIFGFIQVPTKLYPWALLVVI---LPGISFMGHLSGILVGVLHVYGYTKPLLPSPGGLK 237
            GFSGV+FTLA++ESH S     RSI G  QVP + YPW LL++I   LP ISF+GHLSG+L+GVL  YG    L PS G L 
Sbjct:  166 GFSGVIFTLAVLESHSSPPNATRSIMGMCQVPARAYPWVLLIIIQLLLPRISFVGHLSGLLIGVLQSYGCLAFLFPSSGNLN 247          
BLAST of mRNA_H-paniculata_contig42043.10779.1 vs. uniprot
Match: A0A4D9CRG8_9STRA (Rhomboid domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CRG8_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 1.050e-18
Identity = 47/82 (57.32%), Postives = 56/82 (68.29%), Query Frame = 1
Query:    4 GFSGVLFTLALMESHRST-TLYRSIFGFIQVPTKLYPWALLVVI---LPGISFMGHLSGILVGVLHVYGYTKPLLPSPGGLK 237
            GFSGV+FTLA++ESH S     RSI G  QVP + YPW LL++I   LP ISF+GHLSG+L+GVL  YG    L PS G L 
Sbjct:  303 GFSGVIFTLAVLESHSSPPNATRSIMGMCQVPARAYPWVLLIIIQLLLPRISFVGHLSGLLIGVLQSYGCLAFLFPSSGNLN 384          
BLAST of mRNA_H-paniculata_contig42043.10779.1 vs. uniprot
Match: A0A7S0FT53_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0FT53_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 4.120e-18
Identity = 46/83 (55.42%), Postives = 58/83 (69.88%), Query Frame = 1
Query:    1 VGFSGVLFTLALMESHRSTTLYRSIFGFIQVPTKLYPWALLV---VILPGISFMGHLSGILVGVLHVYGYTKPL-LPSPGGLK 237
            VGFSGVLF L+++E++ S    RS+FG +QVP  LYPWALLV   + +P ISF+GHLSGI VG L +YG    L LPS   L+
Sbjct:  128 VGFSGVLFQLSVLEANLSPNSTRSVFGMVQVPAYLYPWALLVALQIFMPNISFVGHLSGIFVGTLQLYGVLDALVLPSDEYLR 210          
BLAST of mRNA_H-paniculata_contig42043.10779.1 vs. uniprot
Match: A0A150GYV7_GONPE (Rhomboid domain-containing protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150GYV7_GONPE)

HSP 1 Score: 82.8 bits (203), Expect = 5.860e-18
Identity = 40/77 (51.95%), Postives = 56/77 (72.73%), Query Frame = 1
Query:    1 VGFSGVLFTLALMESHRSTTLYRSIFGFIQVPTKLYPWALLV---VILPGISFMGHLSGILVGVLHVYGYTKPLLPS 222
            +GFSGV+F L ++++  S    RSIFG   VP +LYPWALLV   +++P +SF+GHLSG++VG L V+GY +PL  S
Sbjct:   28 IGFSGVIFGLIVVDTAASGAAQRSIFGLFTVPAQLYPWALLVFWQLLMPSVSFVGHLSGVVVGQLWVWGYLRPLALS 104          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig42043.10779.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQJ6_ECTSI2.900e-2870.51Rhomboid domain-containing protein n=1 Tax=Ectocar... [more]
A0A835Z1X9_9STRA6.540e-2461.54Rhomboid domain-containing protein n=1 Tax=Tribone... [more]
A0A812V7G2_9DINO3.180e-2062.34RBL15 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=2... [more]
A0A7S0K707_CAFRO4.500e-2062.34Hypothetical protein n=1 Tax=Cafeteria roenbergens... [more]
A0A7S2GX31_9STRA4.740e-2057.83Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A6U6ILB2_9STRA8.200e-1950.60Hypothetical protein n=2 Tax=Odontella aurita TaxI... [more]
W7TU50_9STRA8.990e-1957.32Peptidase S54, rhomboid domain protein n=1 Tax=Nan... [more]
A0A4D9CRG8_9STRA1.050e-1857.32Rhomboid domain-containing protein n=1 Tax=Nannoch... [more]
A0A7S0FT53_9STRA4.120e-1855.42Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]
A0A150GYV7_GONPE5.860e-1851.95Rhomboid domain-containing protein n=1 Tax=Gonium ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig42043contigH-paniculata_contig42043:645..1549 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score110.9
Seed ortholog evalue2.8e-22
Seed eggNOG ortholog2880.D8LQJ6
KEGG koko:K09651
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.serine-type endopeptidase activity
EggNOG OGsKOG2632@1,KOG2632@2759
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002
Exons2
Model size249
Cds size249
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930279.6569147-CDS-H-paniculata_contig42043:644..7671622930279.6569147-CDS-H-paniculata_contig42043:644..767Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig42043 645..767 -
1691481222.9230928-CDS-H-paniculata_contig42043:644..7671691481222.9230928-CDS-H-paniculata_contig42043:644..767Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig42043 645..767 -
1622930279.677858-CDS-H-paniculata_contig42043:1423..15491622930279.677858-CDS-H-paniculata_contig42043:1423..1549Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig42043 1424..1549 -
1691481222.934544-CDS-H-paniculata_contig42043:1423..15491691481222.934544-CDS-H-paniculata_contig42043:1423..1549Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig42043 1424..1549 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig42043.10779.1prot_H-paniculata_contig42043.10779.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig42043 645..1549 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig42043.10779.1

>prot_H-paniculata_contig42043.10779.1 ID=prot_H-paniculata_contig42043.10779.1|Name=mRNA_H-paniculata_contig42043.10779.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=83bp
VGFSGVLFTLALMESHRSTTLYRSIFGFIQVPTKLYPWALLVVILPGISF
MGHLSGILVGVLHVYGYTKPLLPSPGGLKIAP*
back to top

mRNA from alignment at H-paniculata_contig42043:645..1549-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig42043.10779.1 ID=mRNA_H-paniculata_contig42043.10779.1|Name=mRNA_H-paniculata_contig42043.10779.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=905bp|location=Sequence derived from alignment at H-paniculata_contig42043:645..1549- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTGGCTTCAGCGGCGTGCTCTTCACACTGGCTCTCATGGAAAGCCACAG GTCCACCACGCTTTATCGCTCGATCTTTGGCTTCATACAGGTCCCCACCA AGCTCTACCCTTGGGCCCTTCTGGTCGTCTAATCGGTGAGCAGCTACTGT AGTGCTGTTTATTGAATATATATATATCCAACATGTTCATCATAAGTTGA ACTTCCTGGCGTCATTAGATGTTTTTTTCCAAGTAGTGTACCATCTTGGG TATGCAATGGTTGCGACCGCGATAAGCAGCAGGAGGAACCGGCACATTTT TTTCGATTGAATAGCGCCCTCATGCGATACAATAGGTCTCATCAGACAAG GTTTCCTGTGTGGAAAGGGTTCCTGCGTGGAAACGGAGGAAGGAGACTGG AGTTCGCCTCTACGTATGATAATCGACCGCCCATTGAATTGATGGCTTTG GTGGTCTCGCTGGGGTGGTGAACTCTTGACGGAGATGCTAGCCTTTTTCA GTTGGCCCGTTGGCGAAAATGCACCACTCTCATCCAATTTCACATAGCAG CGACAAATGACGTTGACTCAACCTCACGAAACTGCCCCACAACATGGAAA GAGAAGAAAGGGGATATGAAACCGCTCTGTTTGTGAGGCGACGTCACGCA TGTTGGAAGCCTCTAGTCCCCATCCACCAACCCACCCGTGCGAGACCCAA GTTTTCGGGAAGTGCTCATTGTTGGTGTGCTTGTAACGTGAAAACACATC GAAACTGCCTTTCATGCGCCGGCCGAACACAGGTGATACTCCCCGGCATT TCCTTCATGGGCCACTTGTCAGGCATTCTCGTGGGGGTCTTGCATGTTTA CGGGTACACCAAGCCCCTTTTGCCATCTCCAGGTGGGCTAAAAATAGCAC CGTAG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig42043:645..1549-

>mRNA_H-paniculata_contig42043.10779.1 ID=mRNA_H-paniculata_contig42043.10779.1|Name=mRNA_H-paniculata_contig42043.10779.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=498bp|location=Sequence derived from alignment at H-paniculata_contig42043:645..1549- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTGGCTTCAGCGGCGTGCTCTTCACACTGGCTCTCATGGAAAGCCACAG
GTCCACCACGCTTTATCGCTCGATCTTTGGCTTCATACAGGTCCCCACCA
AGCTCTACCCTTGGGCCCTTCTGGTCGTTGGCTTCAGCGGCGTGCTCTTC
ACACTGGCTCTCATGGAAAGCCACAGGTCCACCACGCTTTATCGCTCGAT
CTTTGGCTTCATACAGGTCCCCACCAAGCTCTACCCTTGGGCCCTTCTGG
TCGTGATACTCCCCGGCATTTCCTTCATGGGCCACTTGTCAGGCATTCTC
GTGGGGGTCTTGCATGTTTACGGGTACACCAAGCCCCTTTTGCCATCTCC
AGGTGGGCTAAAAATAGCACCGTAGGTGATACTCCCCGGCATTTCCTTCA
TGGGCCACTTGTCAGGCATTCTCGTGGGGGTCTTGCATGTTTACGGGTAC
ACCAAGCCCCTTTTGCCATCTCCAGGTGGGCTAAAAATAGCACCGTAG
back to top