mRNA_H-paniculata_contig4200.10772.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4200.10772.1
Unique NamemRNA_H-paniculata_contig4200.10772.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig4200.10772.1 vs. uniprot
Match: A0A6H5JMB5_9PHAE (JmjC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMB5_9PHAE)

HSP 1 Score: 183 bits (464), Expect = 4.420e-52
Identity = 87/123 (70.73%), Postives = 106/123 (86.18%), Query Frame = 1
Query:    7 QAGDAEVKVEWRASHDERFGRGQEKAMNFSEFLGELEKGSELLYLTTQDLGVDASGRPRVMAGPLDKLRGDFPLRPRLVGGLVPQNVNLWMGNSRGGKGSSSGLHHDFHDNLYVLLRGKKTFR 375
            +AGDAEVKVE+R   +ER+G+G E+ M F +FLGELE+ ++LLYLTTQ+LG+D +GRP +M+ PLD+LR DFPLRP L G LVPQNVNLWMG+++ G GSSSGLHHDFHDNLYVLLRGKKTFR
Sbjct:   84 KAGDAEVKVEYRGGAEERYGQGLERGMKFGDFLGELERKNDLLYLTTQELGLDPTGRPGLMSAPLDRLREDFPLRPGLAGALVPQNVNLWMGHTKEG-GSSSGLHHDFHDNLYVLLRGKKTFR 205          
BLAST of mRNA_H-paniculata_contig4200.10772.1 vs. uniprot
Match: D8LM10_ECTSI (JmjC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM10_ECTSI)

HSP 1 Score: 181 bits (460), Expect = 1.370e-51
Identity = 86/123 (69.92%), Postives = 105/123 (85.37%), Query Frame = 1
Query:    7 QAGDAEVKVEWRASHDERFGRGQEKAMNFSEFLGELEKGSELLYLTTQDLGVDASGRPRVMAGPLDKLRGDFPLRPRLVGGLVPQNVNLWMGNSRGGKGSSSGLHHDFHDNLYVLLRGKKTFR 375
            +AGDAEVKVE+R   +ER+G+G E+ M F +FLGELE+ ++LLYLTTQ+LG+D +GRP +M+ PLD+LR DFPLRP L G LVPQNVNLWMG+++ G GSSSGLHHDFHDNLYVLLRGKK FR
Sbjct:   84 KAGDAEVKVEYRGGAEERYGQGLERGMKFGDFLGELERKNDLLYLTTQELGLDPTGRPGLMSAPLDRLRNDFPLRPGLAGALVPQNVNLWMGHTKEG-GSSSGLHHDFHDNLYVLLRGKKMFR 205          
BLAST of mRNA_H-paniculata_contig4200.10772.1 vs. uniprot
Match: A0A7S0TJP2_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0TJP2_HEMAN)

HSP 1 Score: 142 bits (358), Expect = 9.090e-40
Identity = 72/122 (59.02%), Postives = 87/122 (71.31%), Query Frame = 1
Query:    7 QAGDAEVKVEWRASHDERFGRGQEKAMNFSEFLGELEKGSELLYLTTQDLGVDASGRPRVMAGPLDKLRGDFPLRPRLVGGLVPQNVNLWMGNSRGGKGSSSGLHHDFHDNLYVLLRGKKTF 372
            +AG A+V+VE+R S    FG G  K M F +FL + EK   LLYLTTQ L +   GRP +M+ PL  L+ DFPLRPRL+G LVP N NLWMGN+RG   SSSGLHHD+HDNLYVL+ G+K F
Sbjct:  130 RAGQAKVEVEFRESQSAPFGVGNSKEMLFKDFLADFEKPDSLLYLTTQPLPLRDDGRPSLMSHPLTDLQDDFPLRPRLMGRLVPANYNLWMGNNRGE--SSSGLHHDYHDNLYVLISGRKRF 249          
BLAST of mRNA_H-paniculata_contig4200.10772.1 vs. uniprot
Match: A0A8K1CH91_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CH91_PYTOL)

HSP 1 Score: 147 bits (370), Expect = 1.650e-39
Identity = 71/122 (58.20%), Postives = 91/122 (74.59%), Query Frame = 1
Query:   10 AGDAEVKVEWRASHDERFGRGQEKAMNFSEFLGELEKGSELLYLTTQDLGVDASGRPRVMAGPLDKLRGDFPLRPRLVGGLVPQNVNLWMGNSRGGKGSSSGLHHDFHDNLYVLLRGKKTFR 375
            AGD  +KVE R+   E+FGRG E  M F + L  +E+G E+ YLTTQD+  +  GRP +MA  + KL+ DFPL+P L+G LVPQN+N+WMGN++   GSSSGLHHD+HDNLY+LLRGKK FR
Sbjct:   99 AGDESLKVEERSKVTEKFGRGVEVDMQFKDMLRLIEEGDEMHYLTTQDVEANEDGRPEIMAPFVAKLQEDFPLQPALLGNLVPQNINIWMGNNK--DGSSSGLHHDYHDNLYILLRGKKRFR 218          
BLAST of mRNA_H-paniculata_contig4200.10772.1 vs. uniprot
Match: A9VAJ2_MONBE (Predicted protein n=1 Tax=Monosiga brevicollis TaxID=81824 RepID=A9VAJ2_MONBE)

HSP 1 Score: 148 bits (374), Expect = 6.130e-39
Identity = 71/122 (58.20%), Postives = 93/122 (76.23%), Query Frame = 1
Query:   10 AGDAEVKVEWRASHDERFGRGQEKAMNFSEFLGELEKGSELLYLTTQDLGVDASGRPRVMAGPLDKLRGDFPLRPRLVGGLVPQNVNLWMGNSRGGKGSSSGLHHDFHDNLYVLLRGKKTFR 375
            AG + VKVE R +   RFG+GQE+ M  ++ +  L++GS+L YLTTQ++G+D  GRP +MA P+ +LRG+FPLRP L+  LVP N NLW+GNSR   GSSSGLHHDFHDN+YVL+ G+K FR
Sbjct:  893 AGASSVKVEHRDNEASRFGQGQEETMTVTDLVQHLKQGSQLYYLTTQNMGLDEEGRPTLMASPVTELRGEFPLRPALLPTLVPFNYNLWVGNSR--TGSSSGLHHDFHDNIYVLIHGRKQFR 1012          
BLAST of mRNA_H-paniculata_contig4200.10772.1 vs. uniprot
Match: A0A836CK29_9STRA (Cupin-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CK29_9STRA)

HSP 1 Score: 143 bits (360), Expect = 9.190e-39
Identity = 67/118 (56.78%), Postives = 88/118 (74.58%), Query Frame = 1
Query:   25 VKVEWRASHDERFGRGQEKAMNFSEFLGELEKGSELLYLTTQDLGVDASGRPRVMAGPLDKLRGDFPLRPRLVGGLVPQNVNLWMGNS-RGGKGSSSGLHHDFHDNLYVLLRGKKTFR 375
            ++VE R +H+E FGRG+E+ M  + FL  +  G  LLYLTTQ+L V A GRP +++ P+  L  DFPLRP+L+  LVPQN+NLW G+S  G  GSS+GLHHD+HDNLYVLLRG+K F+
Sbjct:    1 MRVEHRQNHEEGFGRGRERVMTLAAFLDAIAGGDTLLYLTTQELEVSADGRPDIISTPITHLHADFPLRPQLLATLVPQNMNLWAGHSGEGADGSSTGLHHDYHDNLYVLLRGRKRFK 118          
BLAST of mRNA_H-paniculata_contig4200.10772.1 vs. uniprot
Match: F0W9V9_9STRA (Ion channel putative n=31 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W9V9_9STRA)

HSP 1 Score: 147 bits (370), Expect = 2.180e-38
Identity = 69/122 (56.56%), Postives = 94/122 (77.05%), Query Frame = 1
Query:   10 AGDAEVKVEWRASHDERFGRGQEKAMNFSEFLGELEKGSELLYLTTQDLGVDASGRPRVMAGPLDKLRGDFPLRPRLVGGLVPQNVNLWMGNSRGGKGSSSGLHHDFHDNLYVLLRGKKTFR 375
            +G+  V+VE+RA+  E FGRG+E  M+F  FL  +E+G  L YLTTQD+    SGRP +MA  + +LR DFP+RP L+G L+PQN+N+WMG++R   G+SSGLHHD+HDN+Y+LLRGKK+FR
Sbjct: 2155 SGEELVQVEYRANEMESFGRGRETQMSFHSFLQLVERGDTLHYLTTQDVEEGESGRPELMAPFVQRLRNDFPIRPALMGNLIPQNINVWMGHAR--NGASSGLHHDYHDNMYILLRGKKSFR 2274          
BLAST of mRNA_H-paniculata_contig4200.10772.1 vs. uniprot
Match: A0A2D4BXC6_PYTIN (Ion channel putative n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BXC6_PYTIN)

HSP 1 Score: 145 bits (367), Expect = 5.180e-38
Identity = 71/122 (58.20%), Postives = 90/122 (73.77%), Query Frame = 1
Query:   10 AGDAEVKVEWRASHDERFGRGQEKAMNFSEFLGELEKGSELLYLTTQDLGVDASGRPRVMAGPLDKLRGDFPLRPRLVGGLVPQNVNLWMGNSRGGKGSSSGLHHDFHDNLYVLLRGKKTFR 375
            AG+  +KVE R S  ++FGRG E  M F + L  +E G +L YLTTQD+  D  GRP VMA  + KL+ DFPLRP L+G LVPQN+N+WMGN++   GSS+GLHHD+HDNLY+LLRG+K FR
Sbjct:  526 AGETLLKVEERGSTTDKFGRGVEVDMQFKQLLSLIEAGDDLHYLTTQDVEADEDGRPEVMAPFIAKLQHDFPLRPALMGHLVPQNINIWMGNNK--HGSSTGLHHDYHDNLYILLRGRKRFR 645          
BLAST of mRNA_H-paniculata_contig4200.10772.1 vs. uniprot
Match: A0A5J4XLD0_9CHLO (JmjC domain-containing protein n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4XLD0_9CHLO)

HSP 1 Score: 142 bits (359), Expect = 7.790e-38
Identity = 67/123 (54.47%), Postives = 88/123 (71.54%), Query Frame = 1
Query:    7 QAGDAEVKVEWRASHDERFGRGQEKAMNFSEFLGELEKGSELLYLTTQDLGVDASGRPRVMAGPLDKLRGDFPLRPRLVGGLVPQNVNLWMGNSRGGKGSSSGLHHDFHDNLYVLLRGKKTFR 375
            +AG + V VE +    E FG+G++  M F + + +L KG++ LYLTTQ+ GVD  G P VM  P+ +L+GDFPLRP  +G LVPQ +NLWMG +    G+SSGLHHDFHDNLY+LLRG+K FR
Sbjct:   91 RAGGSNVLVEQKLESSEGFGKGRKVHMTFGQLVQQLHKGNDSLYLTTQEAGVDGDGHPHVMGFPVKELKGDFPLRPECMGNLVPQQINLWMGAAP--NGASSGLHHDFHDNLYILLRGRKRFR 211          
BLAST of mRNA_H-paniculata_contig4200.10772.1 vs. uniprot
Match: A0A5D6Y0Z1_9STRA (JmjC domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y0Z1_9STRA)

HSP 1 Score: 142 bits (359), Expect = 8.650e-38
Identity = 74/123 (60.16%), Postives = 89/123 (72.36%), Query Frame = 1
Query:   10 AGDAEVKVEWRASHDERFGRGQEKAMNFSEFLGELEKGSELLYLTTQDLGVDA-SGRPRVMAGPLDKLRGDFPLRPRLVGGLVPQNVNLWMGNSRGGKGSSSGLHHDFHDNLYVLLRGKKTFR 375
            AGDA + VE RA   E+FGRG E  M F E L  +  G EL YLTTQD+  D   GRP +MA  + +L+ DFPL+P L+G LVPQN+N+WMGN+R   GSSSGLHHD+HDNLY+LLRGKK FR
Sbjct:   99 AGDARLAVERRAGTHEKFGRGIEVPMRFRELLALIAGGDELHYLTTQDVEADEHDGRPELMAPFVARLQHDFPLQPALLGHLVPQNINIWMGNNR--DGSSSGLHHDYHDNLYILLRGKKRFR 219          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4200.10772.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JMB5_9PHAE4.420e-5270.73JmjC domain-containing protein n=1 Tax=Ectocarpus ... [more]
D8LM10_ECTSI1.370e-5169.92JmjC domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A7S0TJP2_HEMAN9.090e-4059.02Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A8K1CH91_PYTOL1.650e-3958.20Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A9VAJ2_MONBE6.130e-3958.20Predicted protein n=1 Tax=Monosiga brevicollis Tax... [more]
A0A836CK29_9STRA9.190e-3956.78Cupin-like domain-containing protein n=1 Tax=Tribo... [more]
F0W9V9_9STRA2.180e-3856.56Ion channel putative n=31 Tax=Albugo laibachii Nc1... [more]
A0A2D4BXC6_PYTIN5.180e-3858.20Ion channel putative n=1 Tax=Pythium insidiosum Ta... [more]
A0A5J4XLD0_9CHLO7.790e-3854.47JmjC domain-containing protein n=1 Tax=Trebouxia s... [more]
A0A5D6Y0Z1_9STRA8.650e-3860.16JmjC domain-containing protein n=1 Tax=Pythium bra... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4200contigH-paniculata_contig4200:14956..16026 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score182.6
Seed ortholog evalue1.2e-43
Seed eggNOG ortholog2880.D8LM10
Hectar predicted targeting categoryother localisation
GOsGO:0000228,GO:0000785,GO:0000790,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006325,GO:0006338,GO:0006464,GO:0006482,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0008214,GO:0009987,GO:0016043,GO:0016569,GO:0016570,GO:0016577,GO:0019538,GO:0031974,GO:0031981,GO:0032451,GO:0032452,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0051276,GO:0070013,GO:0070988,GO:0071704,GO:0071840,GO:0140096,GO:1901564
EggNOG free text desc.Cupin-like domain
EggNOG OGsCOG1226@1,KOG2508@2759
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size384
Cds size384
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930278.8686857-CDS-H-paniculata_contig4200:14955..151051622930278.8686857-CDS-H-paniculata_contig4200:14955..15105Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4200 14956..15105 +
1691481222.5974994-CDS-H-paniculata_contig4200:14955..151051691481222.5974994-CDS-H-paniculata_contig4200:14955..15105Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4200 14956..15105 +
1622930278.8854518-CDS-H-paniculata_contig4200:15792..160261622930278.8854518-CDS-H-paniculata_contig4200:15792..16026Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4200 15793..16026 +
1691481222.609264-CDS-H-paniculata_contig4200:15792..160261691481222.609264-CDS-H-paniculata_contig4200:15792..16026Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4200 15793..16026 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4200.10772.1prot_H-paniculata_contig4200.10772.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4200 14956..16026 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4200.10772.1

>prot_H-paniculata_contig4200.10772.1 ID=prot_H-paniculata_contig4200.10772.1|Name=mRNA_H-paniculata_contig4200.10772.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=128bp
VSQAGDAEVKVEWRASHDERFGRGQEKAMNFSEFLGELEKGSELLYLTTQ
DLGVDASGRPRVMAGPLDKLRGDFPLRPRLVGGLVPQNVNLWMGNSRGGK
GSSSGLHHDFHDNLYVLLRGKKTFRCDD
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mRNA from alignment at H-paniculata_contig4200:14956..16026+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4200.10772.1 ID=mRNA_H-paniculata_contig4200.10772.1|Name=mRNA_H-paniculata_contig4200.10772.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1071bp|location=Sequence derived from alignment at H-paniculata_contig4200:14956..16026+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTATCGCAGGCAGGCGATGCTGAGGTCAAGGTGGAGTGGCGCGCTAGCCA CGACGAGCGGTTTGGGAGGGGACAAGAGAAAGCAATGAACTTCAGCGAGT TTCTGGGGGAACTGGAAAAAGGGAGCGAGCTGCTTTATCTGACGACGCAG GTGATGGTGAAAAAAGGAAGCGAAAGGGATGCGGACACGATGCAGTCGGC GACCCACGTTACTTCTATGCAACTCCTTGCCTTAACAAAAATAATGGATG GGGGAAAAAGCAGTAGTCAGTCACATCGTGTTACTCTACTTGTAACCGTG CCTCTAGTATAATTATTGTGACTGTGATGTATGTGAGTCAATGTCACATA GGTTTTCCTATTGTATCACGGTTCATTGACTGACTATGGCGCACTGACTG TGGTGCCTTATCGTATACTCCAAACGGAAGGTTTGGATGCTGCGGGAAAA TAGTAGCTTCGAGGTCTGCGTGATTGTATTACATTGCTGATTTTTGTGTG ACACGCACCCAATCGTGCATGGATCAAGGACTGCACGAAATATGTCGCTG AATATTGGCCTATATTTAGTAGGTAACCGTAACAGGGAGCTCATCAAAAA CACGGACAATATTTCGGCTGAAGGGTTACCGCGTCCGGGGGTGGAGGGGG GGACAGATCATAAGTTCAAAAAAATTGTCTTGTAAAACCGTCGCGAGTCT TGGTATTCGTCCGGGTGAGTGAACCACTAAAACCTTTGGACAAAGTGAAA TTTATCCCGAGAACGTAATTACGGTCGAGTAATGGAAAATTAGTGCGAAG CTAATGGTTACATGTTGCTCATCGCGCGTCGAGGCAGGATCTGGGCGTGG ACGCAAGTGGGCGACCGAGGGTTATGGCTGGGCCACTGGACAAGCTCAGG GGCGACTTTCCTCTCCGCCCTCGGCTAGTCGGAGGTCTGGTGCCCCAGAA CGTGAACCTGTGGATGGGAAATAGTCGAGGGGGGAAGGGTTCTAGCAGTG GACTGCACCACGATTTTCATGACAATCTGTACGTCTTGCTACGAGGCAAG AAGACGTTCAGGTGCGACGAC
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Coding sequence (CDS) from alignment at H-paniculata_contig4200:14956..16026+

>mRNA_H-paniculata_contig4200.10772.1 ID=mRNA_H-paniculata_contig4200.10772.1|Name=mRNA_H-paniculata_contig4200.10772.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=768bp|location=Sequence derived from alignment at H-paniculata_contig4200:14956..16026+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTATCGCAGGCAGGCGATGCTGAGGTCAAGGTGGAGTGGCGCGCTAGCCA
CGACGAGCGGTTTGGGAGGGGACAAGAGAAAGCAATGAACTTCAGCGAGT
TTCTGGGGGAACTGGAAAAAGGGAGCGAGCTGCTTTATCTGACGACGCAG
GTATCGCAGGCAGGCGATGCTGAGGTCAAGGTGGAGTGGCGCGCTAGCCA
CGACGAGCGGTTTGGGAGGGGACAAGAGAAAGCAATGAACTTCAGCGAGT
TTCTGGGGGAACTGGAAAAAGGGAGCGAGCTGCTTTATCTGACGACGCAG
GATCTGGGCGTGGACGCAAGTGGGCGACCGAGGGTTATGGCTGGGCCACT
GGACAAGCTCAGGGGCGACTTTCCTCTCCGCCCTCGGCTAGTCGGAGGTC
TGGTGCCCCAGAACGTGAACCTGTGGATGGGAAATAGTCGAGGGGGGAAG
GGTTCTAGCAGTGGACTGCACCACGATTTTCATGACAATCTGTACGTCTT
GCTACGAGGCAAGAAGACGTTCAGGTGCGACGACGATCTGGGCGTGGACG
CAAGTGGGCGACCGAGGGTTATGGCTGGGCCACTGGACAAGCTCAGGGGC
GACTTTCCTCTCCGCCCTCGGCTAGTCGGAGGTCTGGTGCCCCAGAACGT
GAACCTGTGGATGGGAAATAGTCGAGGGGGGAAGGGTTCTAGCAGTGGAC
TGCACCACGATTTTCATGACAATCTGTACGTCTTGCTACGAGGCAAGAAG
ACGTTCAGGTGCGACGAC
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