mRNA_H-paniculata_contig4192.10758.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
|
Overview
Homology
BLAST of mRNA_H-paniculata_contig4192.10758.1 vs. uniprot
Match: D7FMP7_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMP7_ECTSI) HSP 1 Score: 326 bits (835), Expect = 1.420e-90 Identity = 317/625 (50.72%), Postives = 364/625 (58.24%), Query Frame = 1
Query: 367 YDNDRIRRRCRLXXXXXXXXXXXXXXXXXXXXXXXXXXFPGLKPRYCSEHKQNGMLNLKTRAFRCKYRGPQVGEHVTPEEAALLRLPGGKTAPCNRACRYAYPGEEAVYCVKHKINGMVDVVNPSCKMQDCLEEPTXXXXXXXXXXXXXXXAVGMKPIAVVRPAALHWSAELRRQAKVQARERSKVDNEVEVGSAKCMPLPPKAATLEEKQRRLDIAAHAVM----------EAQAAQXXXXXXXXXXXSMALNTREMLSASTAPIVPPFS--HEDMGPS--SITSAELTLAFSGLPDEDLAAAAAAASGNLSLPSHAPASGSF-----MGYVMGTGSSSGAHGGGFAVPAPQQPSGLPGIVGAESGPAKKRRRAGEGMPGTAVGPGMITLAASTXXXXXXXXXXXXXNPPSPAFTD-STYHT-YSNELMAPLSTGPAAATPATSIAPHHSNHLLPMHMVTTSYXXXXXXXXXXXXXXXXXXAPMILAQTATDPARMAAAAPVDLLSLAPVAPAXXXXXXXGLSA---------------GMVGGLDGMGMAAAAL-AVGSKCAVADCVAPATFGHPGPGHIPTHCLTHCEEGMHRLAAEIRPVAPV--VAPPLDSETGKRKAEE 2124
YD DRIRRRCRL XXXXXXXXXXXXXXXXX FPGLKPR+CSEHKQ+GMLNLKTRAFRCKYRG G + + ++ LP GKT PCNRACRYAYPGEEAVYC KHK+NGMVDV+NPSC XXXXXXXXXXXXXXX MKPIA +P LHWSAELRRQA ARER+K++ E+E GSA+C PLPPKA T EEK+ R EA AA +MALN+REMLSAST PIVPPF+ E P SITSAEL LAFSGLP++D+ +AAAA + + G G+ H G PA P +SGPAKKRRR +G GPG+ AS+ XXXXXXXXXXX + + D + YH S+E+MA L +P M T XXXXXXXXXXXXXXXX ++ + A PV ++S A XXXXXXX M+ + MA A + A+GSKCAVADC APATFGHPGPGH+PTHCLTHCEEGMHRLAA+ VAP+ VAPP E G A E
Sbjct: 245 YDRDRIRRRCRLHKLDDMVXXXXXXXXXXXXXXXXXCGFPGLKPRFCSEHKQDGMLNLKTRAFRCKYRGV-AGLGIADDP--MMPLPAGKTQPCNRACRYAYPGEEAVYCQKHKLNGMVDVINPSCXXXXXXXXXXXXXXXXXXXXXXXXXXXXMKPIAAQKPTGLHWSAELRRQATANARERNKMEAEMEAGSARCTPLPPKAGTPEEKRMRXXXXXXXXXXXXXXXXRGPEAAAA------------NMALNSREMLSASTYPIVPPFTTNEEVAAPPGMSITSAELALAFSGLPEDDMHSAAAAXXXXXXXXXXXXXXXXXXXXPPLPALPGIGTE---HLGRAVAPAAGTP---------DSGPAKKRRRGSDGSATPTSGPGVDAYEASSAAXXXXXXXXXXXXXSTVQYADHAAYHAALSSEMMAGL---------------------MPSMMQTIGELPXXXXXXXXXXXXXXXXXXXXXXLSSAE-ALAHGFVPVPMVSTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAMLSSPEAFVMAGAVVPAIGSKCAVADCAAPATFGHPGPGHVPTHCLTHCEEGMHRLAADADRVAPLPLVAPP---ENGTAAAGE 817
BLAST of mRNA_H-paniculata_contig4192.10758.1 vs. uniprot
Match: A0A6H5KYH5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYH5_9PHAE) HSP 1 Score: 293 bits (750), Expect = 1.590e-78 Identity = 292/791 (36.92%), Postives = 343/791 (43.36%), Query Frame = 1
Query: 376 DRIRRRCRLXXXXXXXXXXXXXXXXXXXXXXXXXXFPGLKPRYCSEHKQNGMLNLK-------------------------------------------------------------------TRAFRCKYRGPQVGEHVTPEEAALLRLPGGKTAPCNRACRYAYPGEEAVYCVKHKINGMVDVVNPSCKMQDCLEEPTXXXXXXXXXXXXXXXAVGMKPIAVVRPAALHWSAELRRQAKVQARERSKVDNEVEVGSAKCMPLPPKAATLEEKQRRLDIAAHAVM----------EAQAAQXXXXXXXXXXXSMALNTREMLSASTAPIVPPFS-HEDMGPS---SITSAELTLAFSGLPDEDLAAAAAAASGNLSLPSHAPASGSFMGYVMGTGSSSGAHGGGFAVPAPQQPSGLPGI-------------------VGAESGPAKKRRRAGEGMPGTAVGPGMITLAASTXXXXXXXXXXXXXNPPSPA---FTD-STYHT-YSNELMAPLSTGPAAATPATSIAPHHSNHLLPMHMVTTSYXXXXXXXXXXXXXXXXXXAPMILAQTATDPARMAAAAPVDLLSLAPVAPAXXXXXXXGLSAGMVGGLDGMGMAAAAL-AVGSKCAVADCVAPATFGHPGPGHIPTHCLTHCEEGMHRLAAEIRPVAPV--VAPPLDSETGKRKAEEMDGGGMDLTTDP--------------------------------VAATAVAAAAVTTAPGTGEIAAMPTVVAVQPKAKRARKATAQAGEGIMLLAGAVAS 2328
DRIRRRCRL FPGLKPR+CSEHKQ+GMLNLK TRAFRCKYRG G + + ++ LP GKT PCNRACRYAYPGEEAVYC KHK+NGMVDV+NPSCK AVGMKPIA +P LHW+AELRRQA ARER+K++ E+E GSA+C PLPPKA T EEK+ R EA AA +MALN+REMLSAST PIVPPF+ +E+M SITSAEL LAFSGLP++D+ +AAAA F+ P P LPGI +SGPAKKRRR +G GPG+ AS+ XXXXXXXXX F D + YH S+E+MA L P+ P + XXXXX PM+ XXXXXXX M+ + MA A + A+GSKCAVADC APATFGHPGPGH+PTHCLTHCEEGMHRLAA+ VAP+ VAPP + + A ++ VA+ AA T E +P V K K+ +K AGEGIMLLAGAVAS
Sbjct: 262 DRIRRRCRLHKLDDMVDVKSPRCEMAGCRKQPCCGFPGLKPRFCSEHKQDGMLNLKVPYRRCLNTTTPPSPVFAIGVGFSSLAWQRRCKTSPPLGVCHRGIGFSSPANDVVKQANSLRELGNQTRAFRCKYRGV-AGLGIADDP--MMPLPAGKTQPCNRACRYAYPGEEAVYCQKHKLNGMVDVINPSCKAH---------------------MAVGMKPIAAQKPTGLHWNAELRRQATANARERNKMEAEMEAGSARCTPLPPKAGTPEEKRMRXXXXXXXXXXXXXXXXRGPEAAAA------------NMALNSREMLSASTYPIVPPFTTNEEMAAPPGMSITSAELALAFSGLPEDDMHSAAAAXXXXXXXXXXXXXXXXXXXXX-------------FSPPLPA----LPGIGTEHLGRAAALPXXXXXXXXXXDSGPAKKRRRGSDGSATPTSGPGVDAYEASSVAAAXXXXXXXXXXXXXXXXVQFADQAAYHAALSSEMMAGLM--PSMMQPIGELPXXXXXXXXXXXXXXXXXXXXXXLSSADALVHGFVPVPMVSTAXXXXXXXX-----XXXXXXXXXXXXXXXXXXXXXXEAMLSSPEAFVMAGAVVPAIGSKCAVADCAAPATFGHPGPGHVPTHCLTHCEEGMHRLAADADRVAPLPLVAPPENGTSSVPAAGPVEAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVASLEAAA--------TAEPPPVPMKVEETGKVKKNKKKAPAAGEGIMLLAGAVAS 984
BLAST of mRNA_H-paniculata_contig4192.10758.1 vs. uniprot
Match: D7FQ52_ECTSI (EsV-1-7 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQ52_ECTSI) HSP 1 Score: 147 bits (370), Expect = 2.320e-32 Identity = 110/219 (50.23%), Postives = 123/219 (56.16%), Query Frame = 1
Query: 367 YDNDRIRRRCRLXXXXXXXXXXXXXXXXXXXXXXXXXXFPGLKPRYCSEHKQNGMLNLKTRAFRCKYRGPQ-----VGEHVTPEEAALLRLPGGKTAP-----------CNRACRYAYPGEEAVYCVKHKINGMVDVVNPSCKMQDCLEEPTXXXXXXXXXXXXXXXAVGMKPIAVVRPAALHWSAELRRQAKVQARERSKVDNEVEVGSAKCMPLPPK 975
+ DR+RRRCRLXXXXXXXXXXXXXXXXXXXXXXX G K R+CSEHKQ GM+NLKTRAFRCK+RG GK AP CNRACR+AYP E AVYC H + GMVDV+NP C M DCLE PT GM+ I LHWS+E RRQA A E ++ + GSAK LPPK
Sbjct: 246 FKTDRVRRRCRLXXXXXXXXXXXXXXXXXXXXXXXCCGHLGAKARFCSEHKQEGMVNLKTRAFRCKHRGEPKPXXXXXXXXXXXXXXXXXTRNGKGAPPNKKKSRRAVTCNRACRFAYPNEMAVYCAVHALEGMVDVLNPQCSMDDCLEIPTYGFAGEQPTFCMVHSGPGMQVIMPQSTNVLHWSSEARRQAAASALEAKRIAGLRQAGSAKVSTLPPK 464 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4192.10758.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig4192.10758.1 >prot_H-paniculata_contig4192.10758.1 ID=prot_H-paniculata_contig4192.10758.1|Name=mRNA_H-paniculata_contig4192.10758.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=827bp MVNLTVKHCEYTECVTQPSFNYQGQRKARFCARHRLEHMVDVLDRHCAQQback to top mRNA from alignment at H-paniculata_contig4192:604..15743+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig4192.10758.1 ID=mRNA_H-paniculata_contig4192.10758.1|Name=mRNA_H-paniculata_contig4192.10758.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=15140bp|location=Sequence derived from alignment at H-paniculata_contig4192:604..15743+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig4192:604..15743+ >mRNA_H-paniculata_contig4192.10758.1 ID=mRNA_H-paniculata_contig4192.10758.1|Name=mRNA_H-paniculata_contig4192.10758.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=4962bp|location=Sequence derived from alignment at H-paniculata_contig4192:604..15743+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |