mRNA_H-paniculata_contig41915.10757.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig41915.10757.1
Unique NamemRNA_H-paniculata_contig41915.10757.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig41915.10757.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig41915contigH-paniculata_contig41915:746..1455 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size347
Cds size345
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930275.7877991-CDS-H-paniculata_contig41915:745..8061622930275.7877991-CDS-H-paniculata_contig41915:745..806Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig41915 746..806 -
1691481221.1525762-CDS-H-paniculata_contig41915:745..8061691481221.1525762-CDS-H-paniculata_contig41915:745..806Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig41915 746..806 -
1622930275.8038516-CDS-H-paniculata_contig41915:1171..14551622930275.8038516-CDS-H-paniculata_contig41915:1171..1455Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig41915 1172..1455 -
1691481221.173552-CDS-H-paniculata_contig41915:1171..14551691481221.173552-CDS-H-paniculata_contig41915:1171..1455Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig41915 1172..1455 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig41915.10757.1prot_H-paniculata_contig41915.10757.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig41915 746..1455 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig41915.10757.1

>prot_H-paniculata_contig41915.10757.1 ID=prot_H-paniculata_contig41915.10757.1|Name=mRNA_H-paniculata_contig41915.10757.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=115bp
YGHGDYSRRWLSRYLHRKLDHFHEIVHLFHTLSICQYWPSRSHRQYWPSR
SPVAHSPALDHSARAHSHCSTSPPRPRPSQQQHWRATGRAAIHSRLLTVS
EGIAEQAGTQRRCK*
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mRNA from alignment at H-paniculata_contig41915:746..1455-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig41915.10757.1 ID=mRNA_H-paniculata_contig41915.10757.1|Name=mRNA_H-paniculata_contig41915.10757.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=710bp|location=Sequence derived from alignment at H-paniculata_contig41915:746..1455- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TATGGTCACGGTGATTATTCCCGTCGATGGTTGAGTCGATATTTACACCG
AAAATTAGATCATTTCCACGAAATTGTGCACTTGTTCCATACTTTATCCA
TATGTCAATATTGGCCATCCAGATCCCATCGACAATATTGGCCGTCCAGA
TCTCCAGTCGCCCACTCGCCTGCCCTCGATCACAGTGCGCGTGCACATTC
ACACTGCTCCACGTCCCCACCTCGACCACGGCCGTCTCAGCAGCAACACT
GGAGAGCTACAGGCCGAGCCGCCATCCACTCAAGGTATGAAGCGTCGTGC
ACAACTGTTTAGAGTAAATTGTTTCGTAGATTTGCTTGTTTATGCAATGA
CCTCGATCTTGTTCTGTGTTGGGTGTTTCATGTTCTTCTTGTTTGTAGCT
GTAGTGCAGTTCAAAAATCGCTAGGTGCAAGTGCTGGTGTCGCTTCGACG
CCAAGCATCACTGTTGTTGACCTATCTCGTCGTTTGTTATGGATGTACAG
CACTGATGGCTCGTGGAAGTGGATAGCAATGTTGTTGTGGCTGTGTAGAG
CGGCAATTTTCAAATTCATTCGTTTGTTCGCCATGATAGTGCTCTGCTCC
CTGGCTGTTCTTGTCCCTGTTATACAGAGCGTAACCCTAACCCTAAGAGG
CTCTTGACTGTGAGCGAAGGAATAGCGGAGCAGGCTGGTACACAGAGGAG
ATGCAAGTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig41915:746..1455-

>mRNA_H-paniculata_contig41915.10757.1 ID=mRNA_H-paniculata_contig41915.10757.1|Name=mRNA_H-paniculata_contig41915.10757.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=690bp|location=Sequence derived from alignment at H-paniculata_contig41915:746..1455- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TATGGTCACGGTGATTATTCCCGTCGATGGTTGAGTCGATATTTACACCG
AAAATTAGATCATTTCCACGAAATTGTGCACTTGTTCCATACTTTATCCA
TATGTCAATATTGGCCATCCAGATCCCATCGACAATATTGGCCGTCCAGA
TCTCCAGTCGCCCACTCGCCTGCCCTCGATCACAGTGCGCGTGCACATTC
ACACTGCTCCACGTCCCCACCTCGACCACGGCCGTCTCAGCAGCAACACT
GGAGAGCTACAGGCCGAGCCGCCATCCACTCAAGTATGGTCACGGTGATT
ATTCCCGTCGATGGTTGAGTCGATATTTACACCGAAAATTAGATCATTTC
CACGAAATTGTGCACTTGTTCCATACTTTATCCATATGTCAATATTGGCC
ATCCAGATCCCATCGACAATATTGGCCGTCCAGATCTCCAGTCGCCCACT
CGCCTGCCCTCGATCACAGTGCGCGTGCACATTCACACTGCTCCACGTCC
CCACCTCGACCACGGCCGTCTCAGCAGCAACACTGGAGAGCTACAGGCCG
AGCCGCCATCCACTCAAGGCTCTTGACTGTGAGCGAAGGAATAGCGGAGC
AGGCTGGTACACAGAGGAGATGCAAGTAGGCTCTTGACTGTGAGCGAAGG
AATAGCGGAGCAGGCTGGTACACAGAGGAGATGCAAGTAG
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