mRNA_H-paniculata_contig41834.10741.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig41834.10741.1
Unique NamemRNA_H-paniculata_contig41834.10741.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig41834.10741.1 vs. uniprot
Match: A0A5K1JYL8_9APHY (Isocitrate lyase (ICL) (Isocitrase) (Isocitratase) (MICA) -isocitrate glyoxylate-lyase))) (Fragment) n=1 Tax=Ganoderma boninense TaxID=34458 RepID=A0A5K1JYL8_9APHY)

HSP 1 Score: 61.6 bits (148), Expect = 3.710e-10
Identity = 31/56 (55.36%), Postives = 40/56 (71.43%), Query Frame = 1
Query:    1 DNQGAEKMARNKHTSRRTRHIDVKHHIVRDAVEVGKVDVAYVGTGKQHSDVLTKAL 168
            DNQ A  +A+N     RT+HI V+HH +RD +E G++ VAYV TG Q +DVLTKAL
Sbjct:  130 DNQSAMALAKNSEFHDRTKHIAVRHHFIRDEIEEGRIRVAYVPTGDQVADVLTKAL 185          
BLAST of mRNA_H-paniculata_contig41834.10741.1 vs. uniprot
Match: UPI001CC20AEF (Ty1/Copia family ribonuclease HI n=1 Tax=Pseudomonas aeruginosa TaxID=287 RepID=UPI001CC20AEF)

HSP 1 Score: 58.5 bits (140), Expect = 8.430e-10
Identity = 28/56 (50.00%), Postives = 39/56 (69.64%), Query Frame = 1
Query:    1 DNQGAEKMARNKHTSRRTRHIDVKHHIVRDAVEVGKVDVAYVGTGKQHSDVLTKAL 168
            DNQGA K+A+++    RT+HIDV+HH VRD  E   +D+ Y+ T K  +D+LTK L
Sbjct:   27 DNQGAMKLAQSRSYHSRTKHIDVRHHFVRDMCEQSVIDLKYLSTDKMPADILTKGL 82          
BLAST of mRNA_H-paniculata_contig41834.10741.1 vs. uniprot
Match: A0A0L7QKC3_9HYME (Copia protein n=1 Tax=Habropoda laboriosa TaxID=597456 RepID=A0A0L7QKC3_9HYME)

HSP 1 Score: 58.2 bits (139), Expect = 1.570e-9
Identity = 30/56 (53.57%), Postives = 39/56 (69.64%), Query Frame = 1
Query:    1 DNQGAEKMARNKHTSRRTRHIDVKHHIVRDAVEVGKVDVAYVGTGKQHSDVLTKAL 168
            DNQGA K+A N     RT+HIDV+HH VRDA+    +++ YV TG+  +DVLTK L
Sbjct:   33 DNQGAIKLAENPVFHNRTKHIDVRHHFVRDALRDKAIELKYVPTGEMVADVLTKGL 88          
BLAST of mRNA_H-paniculata_contig41834.10741.1 vs. uniprot
Match: A0A8D8LBR2_9HEMI (Copia protein n=1 Tax=Cacopsylla melanoneura TaxID=428564 RepID=A0A8D8LBR2_9HEMI)

HSP 1 Score: 59.3 bits (142), Expect = 3.610e-9
Identity = 28/56 (50.00%), Postives = 40/56 (71.43%), Query Frame = 1
Query:    1 DNQGAEKMARNKHTSRRTRHIDVKHHIVRDAVEVGKVDVAYVGTGKQHSDVLTKAL 168
            DNQ A  MA+N+   +RT+H+D+K+H +RD VE G V + YV T KQ +D+ TK+L
Sbjct:  152 DNQSAIHMAKNRENGKRTKHVDIKYHFIRDEVEKGNVILKYVPTDKQVADMFTKSL 207          
BLAST of mRNA_H-paniculata_contig41834.10741.1 vs. uniprot
Match: A0A182G3Q0_AEDAL (Uncharacterized protein n=1 Tax=Aedes albopictus TaxID=7160 RepID=A0A182G3Q0_AEDAL)

HSP 1 Score: 56.6 bits (135), Expect = 5.650e-9
Identity = 29/56 (51.79%), Postives = 37/56 (66.07%), Query Frame = 1
Query:    1 DNQGAEKMARNKHTSRRTRHIDVKHHIVRDAVEVGKVDVAYVGTGKQHSDVLTKAL 168
            DNQ A  +A+N     RT+HID++HH +RDA E G V V Y+ T KQ +D LTK L
Sbjct:   31 DNQSAISVAKNGGYQPRTKHIDIRHHFIRDAWEKGDVQVVYISTDKQTADGLTKPL 86          
BLAST of mRNA_H-paniculata_contig41834.10741.1 vs. uniprot
Match: A0A6A3XRN8_9STRA (Uncharacterized protein n=7 Tax=Phytophthora TaxID=4783 RepID=A0A6A3XRN8_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 6.030e-9
Identity = 29/56 (51.79%), Postives = 39/56 (69.64%), Query Frame = 1
Query:    1 DNQGAEKMARNKHTSRRTRHIDVKHHIVRDAVEVGKVDVAYVGTGKQHSDVLTKAL 168
            DNQGA  +A+N     RT+H+D++HH +R+ VE G V V YV T  Q +D+LTKAL
Sbjct:   48 DNQGAIALAQNAGYHARTKHVDIRHHFIRENVERGTVKVEYVDTKNQLADMLTKAL 103          
BLAST of mRNA_H-paniculata_contig41834.10741.1 vs. uniprot
Match: A0A0A9YPH4_LYGHE (Copia protein n=1 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9YPH4_LYGHE)

HSP 1 Score: 59.3 bits (142), Expect = 6.810e-9
Identity = 26/56 (46.43%), Postives = 40/56 (71.43%), Query Frame = 1
Query:    1 DNQGAEKMARNKHTSRRTRHIDVKHHIVRDAVEVGKVDVAYVGTGKQHSDVLTKAL 168
            DNQ    +ARN+  S+R +HID+KHH +R+ V+ G + + YV T +Q++D+LTK L
Sbjct:  273 DNQSCIHLARNRENSKRIKHIDIKHHFIREKVDEGVIKLNYVSTSEQNADILTKGL 328          
BLAST of mRNA_H-paniculata_contig41834.10741.1 vs. uniprot
Match: A0A8D9ANA1_9HEMI (Copia protein n=3 Tax=Cacopsylla melanoneura TaxID=428564 RepID=A0A8D9ANA1_9HEMI)

HSP 1 Score: 59.3 bits (142), Expect = 7.230e-9
Identity = 28/56 (50.00%), Postives = 40/56 (71.43%), Query Frame = 1
Query:    1 DNQGAEKMARNKHTSRRTRHIDVKHHIVRDAVEVGKVDVAYVGTGKQHSDVLTKAL 168
            DNQ A  MA+N+   +RT+H+D+K+H +RD VE G V + YV T KQ +D+ TK+L
Sbjct:  536 DNQSAIHMAKNRENGKRTKHVDIKYHFIRDEVEKGNVILKYVPTDKQVADMFTKSL 591          
BLAST of mRNA_H-paniculata_contig41834.10741.1 vs. uniprot
Match: A0A0J7KA47_LASNI (Retroelement pol polyprotein n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7KA47_LASNI)

HSP 1 Score: 59.3 bits (142), Expect = 7.280e-9
Identity = 28/56 (50.00%), Postives = 41/56 (73.21%), Query Frame = 1
Query:    1 DNQGAEKMARNKHTSRRTRHIDVKHHIVRDAVEVGKVDVAYVGTGKQHSDVLTKAL 168
            DNQG+ K+ +N    +RT+HIDV+ H +R+  E G+VD+ YV + KQ +D+LTKAL
Sbjct: 1157 DNQGSIKLVKNLEFHKRTKHIDVRFHFIREVYENGQVDIKYVPSSKQLADILTKAL 1212          
BLAST of mRNA_H-paniculata_contig41834.10741.1 vs. uniprot
Match: A0A4Y9YHS6_9AGAM (Integrase catalytic domain-containing protein n=1 Tax=Dentipellis fragilis TaxID=205917 RepID=A0A4Y9YHS6_9AGAM)

HSP 1 Score: 59.3 bits (142), Expect = 7.290e-9
Identity = 31/56 (55.36%), Postives = 40/56 (71.43%), Query Frame = 1
Query:    1 DNQGAEKMARNKHTSRRTRHIDVKHHIVRDAVEVGKVDVAYVGTGKQHSDVLTKAL 168
            DNQ A  +ARN     RT+HIDV+HH +R+ VE G +D+ YV TG+Q +DVLTK L
Sbjct: 1355 DNQSAMAIARNPAFHARTKHIDVRHHFLREKVEEGILDLEYVPTGEQVADVLTKGL 1410          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig41834.10741.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5K1JYL8_9APHY3.710e-1055.36Isocitrate lyase (ICL) (Isocitrase) (Isocitratase)... [more]
UPI001CC20AEF8.430e-1050.00Ty1/Copia family ribonuclease HI n=1 Tax=Pseudomon... [more]
A0A0L7QKC3_9HYME1.570e-953.57Copia protein n=1 Tax=Habropoda laboriosa TaxID=59... [more]
A0A8D8LBR2_9HEMI3.610e-950.00Copia protein n=1 Tax=Cacopsylla melanoneura TaxID... [more]
A0A182G3Q0_AEDAL5.650e-951.79Uncharacterized protein n=1 Tax=Aedes albopictus T... [more]
A0A6A3XRN8_9STRA6.030e-951.79Uncharacterized protein n=7 Tax=Phytophthora TaxID... [more]
A0A0A9YPH4_LYGHE6.810e-946.43Copia protein n=1 Tax=Lygus hesperus TaxID=30085 R... [more]
A0A8D9ANA1_9HEMI7.230e-950.00Copia protein n=3 Tax=Cacopsylla melanoneura TaxID... [more]
A0A0J7KA47_LASNI7.280e-950.00Retroelement pol polyprotein n=1 Tax=Lasius niger ... [more]
A0A4Y9YHS6_9AGAM7.290e-955.36Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig41834contigH-paniculata_contig41834:5..172 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size168
Cds size147
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930273.56718-UTR-H-paniculata_contig41834:4..251622930273.56718-UTR-H-paniculata_contig41834:4..25Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig41834 5..25 +
1691481220.1265757-UTR-H-paniculata_contig41834:4..251691481220.1265757-UTR-H-paniculata_contig41834:4..25Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig41834 5..25 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930273.5824864-CDS-H-paniculata_contig41834:25..1721622930273.5824864-CDS-H-paniculata_contig41834:25..172Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig41834 26..172 +
1691481220.1456459-CDS-H-paniculata_contig41834:25..1721691481220.1456459-CDS-H-paniculata_contig41834:25..172Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig41834 26..172 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig41834.10741.1prot_H-paniculata_contig41834.10741.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig41834 26..172 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig41834.10741.1

>prot_H-paniculata_contig41834.10741.1 ID=prot_H-paniculata_contig41834.10741.1|Name=mRNA_H-paniculata_contig41834.10741.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=49bp
MARNKHTSRRTRHIDVKHHIVRDAVEVGKVDVAYVGTGKQHSDVLTKAL
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mRNA from alignment at H-paniculata_contig41834:5..172+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig41834.10741.1 ID=mRNA_H-paniculata_contig41834.10741.1|Name=mRNA_H-paniculata_contig41834.10741.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=168bp|location=Sequence derived from alignment at H-paniculata_contig41834:5..172+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACAATCAAGGGGCCGAAAAGATGGCCCGCAACAAGCACACCAGTCGGAG GACGCGTCACATCGACGTGAAGCACCACATTGTTCGCGATGCGGTTGAGG TTGGGAAGGTGGACGTGGCCTATGTGGGAACGGGAAAGCAGCACTCGGAC GTACTCACGAAGGCGTTG
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Coding sequence (CDS) from alignment at H-paniculata_contig41834:5..172+

>mRNA_H-paniculata_contig41834.10741.1 ID=mRNA_H-paniculata_contig41834.10741.1|Name=mRNA_H-paniculata_contig41834.10741.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=294bp|location=Sequence derived from alignment at H-paniculata_contig41834:5..172+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCCCGCAACAAGCACACCAGTCGGAGGACGCGTCACATCGACGTGAA
GCACCACATTGTTCGCGATGCGGTTGAGGTTGGGAAGGTGGACGTGGCCT
ATGTGGGAACGGGAAAGCAGCACTCGGACGTACTCACGAAGGCGTTGATG
GCCCGCAACAAGCACACCAGTCGGAGGACGCGTCACATCGACGTGAAGCA
CCACATTGTTCGCGATGCGGTTGAGGTTGGGAAGGTGGACGTGGCCTATG
TGGGAACGGGAAAGCAGCACTCGGACGTACTCACGAAGGCGTTG
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