mRNA_H-paniculata_contig41818.10737.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig41818.10737.1
Unique NamemRNA_H-paniculata_contig41818.10737.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig41818.10737.1 vs. uniprot
Match: A0A2K3K2M2_TRIPR (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3K2M2_TRIPR)

HSP 1 Score: 59.7 bits (143), Expect = 2.310e-8
Identity = 31/81 (38.27%), Postives = 48/81 (59.26%), Query Frame = 1
Query:   13 GSPSGVWSIFEDWFRGTTSGERTRV---RKDFENLAVQQNETPNEFLARSFAIVELMKEVGVDMAETEVHHQIARSLPDRF 246
            GSP  +W      ++G+T  +R ++   R+DFE LA++ NE+ N++ AR+ +IV  M   G  M  T+V  +I RSL  RF
Sbjct:   88 GSPRDIWEAMRTKYQGSTQVKRAQLQALRRDFEILAMKDNESINDYFARTLSIVNKMTAQGHKMESTDVVEKILRSLTSRF 168          
BLAST of mRNA_H-paniculata_contig41818.10737.1 vs. uniprot
Match: A0A2Z6MEK1_TRISU (Uncharacterized protein n=1 Tax=Trifolium subterraneum TaxID=3900 RepID=A0A2Z6MEK1_TRISU)

HSP 1 Score: 53.9 bits (128), Expect = 1.970e-6
Identity = 26/76 (34.21%), Postives = 47/76 (61.84%), Query Frame = 1
Query:   28 VWSIFEDWFRGTTSGERTRV---RKDFENLAVQQNETPNEFLARSFAIVELMKEVGVDMAETEVHHQIARSLPDRF 246
            +W      ++G+T+ +R  +   R++FE LAV+++E+ N++ AR+ AIV  M   G  M  T +  +I RS+P++F
Sbjct:   70 IWEATRRKYQGSTNVKRAHLQALRREFEVLAVKEDESVNDYFARTLAIVNRMSAQGETMEHTVIVEKILRSMPEKF 145          
BLAST of mRNA_H-paniculata_contig41818.10737.1 vs. uniprot
Match: UPI001E6954D1 (uncharacterized protein LOC123895786 n=1 Tax=Trifolium pratense TaxID=57577 RepID=UPI001E6954D1)

HSP 1 Score: 52.4 bits (124), Expect = 4.050e-6
Identity = 27/77 (35.06%), Postives = 45/77 (58.44%), Query Frame = 1
Query:   13 GSPSGVWSIFEDWFRGTTSGERTRV---RKDFENLAVQQNETPNEFLARSFAIVELMKEVGVDMAETEVHHQIARSL 234
            GSP  +W      ++G+   +R ++   R+DFE LA++ NE+ N++ AR+ ++V  M   G  M  T+V  +I RSL
Sbjct:   88 GSPRDIWEAMRTKYQGSIQVKRAQLQAQRRDFEILAMKDNESINDYFARTLSLVNKMTAQGHKMESTDVVEKILRSL 164          
BLAST of mRNA_H-paniculata_contig41818.10737.1 vs. uniprot
Match: A0A392NAW6_9FABA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392NAW6_9FABA)

HSP 1 Score: 51.6 bits (122), Expect = 1.140e-5
Identity = 26/80 (32.50%), Postives = 45/80 (56.25%), Query Frame = 1
Query:   16 SPSGVWSIFEDWFRGTTSGERTRV---RKDFENLAVQQNETPNEFLARSFAIVELMKEVGVDMAETEVHHQIARSLPDRF 246
            S   +W   +  ++G+T  +R ++   R DFE L +++NET +E+ AR+ AI   M   G  M +  +  +I RS+P +F
Sbjct:   62 SAKDIWDAMKRKYQGSTKVKRAQLQALRHDFEVLTMKENETVDEYFARTLAIANRMSAHGERMEQVTIVEKILRSMPAKF 141          
BLAST of mRNA_H-paniculata_contig41818.10737.1 vs. uniprot
Match: A0A1B5Z9B3_TRISU (Uncharacterized protein (Fragment) n=1 Tax=Trifolium subterraneum TaxID=3900 RepID=A0A1B5Z9B3_TRISU)

HSP 1 Score: 51.6 bits (122), Expect = 1.450e-5
Identity = 26/76 (34.21%), Postives = 46/76 (60.53%), Query Frame = 1
Query:   28 VWSIFEDWFRGTTSGERTRV---RKDFENLAVQQNETPNEFLARSFAIVELMKEVGVDMAETEVHHQIARSLPDRF 246
            +W   +  ++G+T  +R ++   RK+FE LA+ ++E+ NE+ AR+ AI   M   G  + +  V  +I RS+P+RF
Sbjct:   94 IWEAMKRKYQGSTKVKRAQLQSSRKEFELLAMGEDESVNEYFARTLAIANRMTAQGERVEQVVVVEKILRSMPERF 169          
BLAST of mRNA_H-paniculata_contig41818.10737.1 vs. uniprot
Match: A0A2H9ZYF2_9ASPA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Apostasia shenzhenica TaxID=1088818 RepID=A0A2H9ZYF2_9ASPA)

HSP 1 Score: 51.6 bits (122), Expect = 2.310e-5
Identity = 30/96 (31.25%), Postives = 51/96 (53.12%), Query Frame = 1
Query:   28 VWSIFEDWFRGTT---SGERTRVRKDFENLAVQQNETPNEFLARSFAIVELMKEVGVDMAETEVHHQIARSLPDRFAIAKDMMLMKKDLSRKDLEE 306
             W+I E  ++GT    +     +R+DFENL +  +E+  EF +R  A+V+ ++ +G  + E +V  ++ RSLP +F      +   KDL    L E
Sbjct:   11 AWTILETEYQGTNKVITVNLQNLRRDFENLVMNDSESVQEFSSRVNAVVKKIRTLGEILPEQKVVEKVLRSLPPKFNFVVAAIEESKDLRTYSLNE 106          
BLAST of mRNA_H-paniculata_contig41818.10737.1 vs. uniprot
Match: A0A6H5KAF3_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAF3_9PHAE)

HSP 1 Score: 49.7 bits (117), Expect = 9.350e-5
Identity = 24/102 (23.53%), Postives = 50/102 (49.02%), Query Frame = 1
Query:    1 MVIDGSPSGVWSIFEDWFRGTTSGERTRVRKDFENLAVQQNETPNEFLARSFAIVELMKEVGVDMAETEVHHQIARSLPDRFAIAKDMMLMKKDLSRKDLEE 306
            ++ DGSPSG W IF +++      E+ R+   +  L ++  ETP ++  R   +   +   GV  ++ + +  +   L D + + K + +     SR+ +E+
Sbjct:   94 IIADGSPSGGWKIFLNYYEPRARAEKERLSSQYHGLEMKVGETPQDYFGRFAVLRSRLAPHGVIFSDEDANAHMVYHLSDEYMMEKILTMSPIPRSREKIEK 195          
BLAST of mRNA_H-paniculata_contig41818.10737.1 vs. uniprot
Match: A0A392N378_9FABA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392N378_9FABA)

HSP 1 Score: 49.7 bits (117), Expect = 9.820e-5
Identity = 25/80 (31.25%), Postives = 43/80 (53.75%), Query Frame = 1
Query:   16 SPSGVWSIFEDWFRGTTSGERTRV---RKDFENLAVQQNETPNEFLARSFAIVELMKEVGVDMAETEVHHQIARSLPDRF 246
            S   +W      F G+T  +R ++   R++FE L + +NET N++ AR+ AI   M   G  M + ++  ++ RSL  +F
Sbjct:   89 SAKHIWDSMRSKFSGSTKVKRAQLQALRREFEILGMNENETINDYFARTLAIANRMTAQGERMEQVKIVEKVLRSLTPKF 168          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig41818.10737.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A2K3K2M2_TRIPR2.310e-838.27Retrovirus-related Pol polyprotein from transposon... [more]
A0A2Z6MEK1_TRISU1.970e-634.21Uncharacterized protein n=1 Tax=Trifolium subterra... [more]
UPI001E6954D14.050e-635.06uncharacterized protein LOC123895786 n=1 Tax=Trifo... [more]
A0A392NAW6_9FABA1.140e-532.50Retrovirus-related Pol polyprotein from transposon... [more]
A0A1B5Z9B3_TRISU1.450e-534.21Uncharacterized protein (Fragment) n=1 Tax=Trifoli... [more]
A0A2H9ZYF2_9ASPA2.310e-531.25Retrovirus-related Pol polyprotein from transposon... [more]
A0A6H5KAF3_9PHAE9.350e-523.53Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A392N378_9FABA9.820e-531.25Retrovirus-related Pol polyprotein from transposon... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig41818contigH-paniculata_contig41818:477..782 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size306
Cds size306
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930272.899241-CDS-H-paniculata_contig41818:476..7821622930272.899241-CDS-H-paniculata_contig41818:476..782Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig41818 477..782 -
1691481219.8794422-CDS-H-paniculata_contig41818:476..7821691481219.8794422-CDS-H-paniculata_contig41818:476..782Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig41818 477..782 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig41818.10737.1prot_H-paniculata_contig41818.10737.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig41818 477..782 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig41818.10737.1

>prot_H-paniculata_contig41818.10737.1 ID=prot_H-paniculata_contig41818.10737.1|Name=mRNA_H-paniculata_contig41818.10737.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=102bp
MVIDGSPSGVWSIFEDWFRGTTSGERTRVRKDFENLAVQQNETPNEFLAR
SFAIVELMKEVGVDMAETEVHHQIARSLPDRFAIAKDMMLMKKDLSRKDL
EE
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mRNA from alignment at H-paniculata_contig41818:477..782-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig41818.10737.1 ID=mRNA_H-paniculata_contig41818.10737.1|Name=mRNA_H-paniculata_contig41818.10737.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=306bp|location=Sequence derived from alignment at H-paniculata_contig41818:477..782- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTGATCGATGGCTCGCCATCTGGAGTGTGGAGTATCTTTGAAGACTG GTTCAGAGGCACAACATCTGGAGAGCGTACTAGAGTTCGTAAAGACTTTG AGAACTTGGCAGTACAACAAAATGAGACACCAAATGAATTTCTGGCTAGG TCTTTTGCCATTGTAGAGCTGATGAAGGAGGTTGGTGTTGACATGGCAGA GACAGAAGTTCACCATCAGATCGCTCGCTCTCTTCCCGATCGTTTCGCTA TTGCAAAAGACATGATGCTTATGAAAAAGGATTTGTCTAGGAAAGATCTT GAGGAA
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Coding sequence (CDS) from alignment at H-paniculata_contig41818:477..782-

>mRNA_H-paniculata_contig41818.10737.1 ID=mRNA_H-paniculata_contig41818.10737.1|Name=mRNA_H-paniculata_contig41818.10737.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=612bp|location=Sequence derived from alignment at H-paniculata_contig41818:477..782- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTGATCGATGGCTCGCCATCTGGAGTGTGGAGTATCTTTGAAGACTG
GTTCAGAGGCACAACATCTGGAGAGCGTACTAGAGTTCGTAAAGACTTTG
AGAACTTGGCAGTACAACAAAATGAGACACCAAATGAATTTCTGGCTAGG
TCTTTTGCCATTGTAGAGCTGATGAAGGAGGTTGGTGTTGACATGGCAGA
GACAGAAGTTCACCATCAGATCGCTCGCTCTCTTCCCGATCGTTTCGCTA
TTGCAAAAGACATGATGCTTATGAAAAAGGATTTGTCTAGGAAAGATCTT
GAGGAAATGGTGATCGATGGCTCGCCATCTGGAGTGTGGAGTATCTTTGA
AGACTGGTTCAGAGGCACAACATCTGGAGAGCGTACTAGAGTTCGTAAAG
ACTTTGAGAACTTGGCAGTACAACAAAATGAGACACCAAATGAATTTCTG
GCTAGGTCTTTTGCCATTGTAGAGCTGATGAAGGAGGTTGGTGTTGACAT
GGCAGAGACAGAAGTTCACCATCAGATCGCTCGCTCTCTTCCCGATCGTT
TCGCTATTGCAAAAGACATGATGCTTATGAAAAAGGATTTGTCTAGGAAA
GATCTTGAGGAA
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