mRNA_H-paniculata_contig4153.10673.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4153.10673.1
Unique NamemRNA_H-paniculata_contig4153.10673.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig4153.10673.1 vs. uniprot
Match: D8LBD9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBD9_ECTSI)

HSP 1 Score: 219 bits (559), Expect = 3.300e-69
Identity = 119/163 (73.01%), Postives = 135/163 (82.82%), Query Frame = 1
Query:    1 MARGRSFRPSGESKRQARVSQLMTSELAEILRLGHGIKTKDKIADDVRCKISVVDVDMSPDLRSAKVFVSVYGDVLEKREAYAWCVKNTKAIRRALAASLKDMKRVPELYFKDTDIGAAVDLMALIEKVGAEDDAAVAA-----RGGADGADDLGEDDIYTFD 474
            MARG +FR + ESKRQARVSQL+T ELA+ILRLGHGIKTKDKI DDVRC+I+VVDVDMSPDLRSAKVF+SVYGDVLEKREAYAWCVKNTKAIR AL A LK MKRVPEL+FKDTDI AAVDLMALI++V  ++D   AA         +G + + EDD +TFD
Sbjct:   73 MARGSTFRSTTESKRQARVSQLLTGELAKILRLGHGIKTKDKIDDDVRCRIAVVDVDMSPDLRSAKVFISVYGDVLEKREAYAWCVKNTKAIRMALCAELKGMKRVPELFFKDTDISAAVDLMALIDRVSGDEDGNEAALRDDGEEEIEGFEGVTEDDFFTFD 235          
BLAST of mRNA_H-paniculata_contig4153.10673.1 vs. uniprot
Match: A0A835ZHE8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHE8_9STRA)

HSP 1 Score: 159 bits (403), Expect = 4.850e-46
Identity = 80/118 (67.80%), Postives = 99/118 (83.90%), Query Frame = 1
Query:   34 ESKRQARVSQLMTSELAEILRLGHGIKTKDKIADDVRCKISVVDVDMSPDLRSAKVFVSVYGDVLEKREAYAWCVKNTKAIRRALAASLKDMKRVPELYFKDTDIGAAVDLMALIEKV 387
            ESKRQAR+SQL+T+ELA I+RLGH +K    ++D++R KIS+VDV++SPDLR+A++FVSVYGD LEKREAY WCV+NT  IR AL+  LKDMK VPEL F+ TDIGAAVD+M LI KV
Sbjct:   68 ESKRQARISQLLTAELASIIRLGHHVKGSKALSDELRSKISIVDVNVSPDLRNARIFVSVYGDRLEKREAYGWCVRNTGGIRFALSQRLKDMKGVPELTFQQTDIGAAVDVMHLIGKV 185          
BLAST of mRNA_H-paniculata_contig4153.10673.1 vs. uniprot
Match: A0A7S2DN30_9STRA (Hypothetical protein n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DN30_9STRA)

HSP 1 Score: 142 bits (358), Expect = 6.760e-39
Identity = 74/132 (56.06%), Postives = 98/132 (74.24%), Query Frame = 1
Query:    1 MARGRSFRPSGESKRQARVSQLMTSELAEILRLGHGIKTKDKIADDVRCKISVVDVDMSPDLRSAKVFVSVYGDVLEKREAYAWCVKNTKAIRRALAASLKDMKRVPELYFKDTDIGAAVDLMALIEKVGAE 396
            M+RG +     ESKRQ RVSQ++ SE+  ILR G     K  I D +R KIS+VDV MSPDLR+AKV+VSV+GD++++R+AY+W V N+KAI+ +LA SL  MK VP+LYFK+TD+ AAVD+M  IE + AE
Sbjct:   45 MSRGNAVSKGRESKRQGRVSQVIRSEIVTILRRGSMKYMKKDIGDTLRQKISIVDVHMSPDLRTAKVYVSVFGDIVDRRQAYSWLVMNSKAIKHSLAQSLSAMKTVPDLYFKETDLAAAVDVMTTIESIHAE 176          
BLAST of mRNA_H-paniculata_contig4153.10673.1 vs. uniprot
Match: A0A7S1U3D0_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U3D0_9STRA)

HSP 1 Score: 120 bits (302), Expect = 3.750e-31
Identity = 62/128 (48.44%), Postives = 92/128 (71.88%), Query Frame = 1
Query:    4 ARGRSF-RPSGESKRQARVSQLMTSELAEILRLGHGIKTKDKIADDVRCKISVVDVDMSPDLRSAKVFVSVYGDVLEKREAYAWCVKNTKAIRRALAASLKDMKRVPELYFKDTDIGAAVDLMALIEK 384
            ARG S  R   ES+RQ+R++QL+ +E++ IL  GHG+++   I  ++R  IS+VDVD+SPDLR+  ++VSV GD   KREA+AW V++T+A+R  LA   + +KR+PE+ FK  D+ AAVD+  LIE+
Sbjct:   30 ARGGSLVRRRDESRRQSRIAQLVKAEVSAILLTGHGVRSPRDIDGELRKAISIVDVDVSPDLRNCNIYVSVRGDGAGKREAFAWLVRSTRALRHVLAQRNRGLKRIPEILFKQADVSAAVDVFRLIEE 157          
BLAST of mRNA_H-paniculata_contig4153.10673.1 vs. uniprot
Match: A0A7R9W0U4_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W0U4_9STRA)

HSP 1 Score: 116 bits (291), Expect = 3.260e-29
Identity = 64/127 (50.39%), Postives = 86/127 (67.72%), Query Frame = 1
Query:   19 FRPSGESKRQARVSQLMTSELAEILRLGHGIKTKDKIADDVRCKISVVDVDMSPDLRSAKVFVSVYG----DVLEKREAYAWCVKNTKAIRRALAASLKDMKRVPELYFKDTDIGAAVDLMALIEKV 387
            +  S  SKRQ RV  ++ SELA I++ G  IK  D I D++R +I+VV+ D+SPDLR A+V VS+ G      ++KR AY+W V++TK IR A+A  LK MK  P+L F   D+GAAVD+M LIEKV
Sbjct:   49 YAASDRSKRQERVGHVVRSELARIIQAGFPIKNVDPIDDELRRRINVVNADVSPDLRHARVTVSIIGRGETSTVDKRRAYSWLVRSTKMIRHAMAQRLKHMKVCPDLKFVQADVGAAVDVMRLIEKV 175          
BLAST of mRNA_H-paniculata_contig4153.10673.1 vs. uniprot
Match: A0A7S2SUM5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SUM5_9STRA)

HSP 1 Score: 110 bits (275), Expect = 6.370e-27
Identity = 62/128 (48.44%), Postives = 85/128 (66.41%), Query Frame = 1
Query:    4 ARGRSFRPSGESKRQARVSQLMTSELAEILRLGHGIKTKDKIADDVRCKISVVDVDMSPDLRSAKVFVSVYGDVLEKREAYAWCVKNTKAIRRALAASLKDMKRVPELYFKDTDIGAAVDLMALIEKV 387
            ARG       ESKRQARV+QL+ +EL++++R G    TK  I +  R KIS+VDV MSPDLR+AKVFVSV+    E R+AYAW V+++ A R  L+  L+ M+ VP L F+  D+  AVD+M  I+ +
Sbjct:   56 ARGPGVGRRDESKRQARVAQLVRAELSQVIRQGTRANTKG-ITEATRQKISIVDVHMSPDLRNAKVFVSVFASGPESRQAYAWLVQSSGAFRHELSQELRHMRSVPALTFRRADVAEAVDVMVAIDNL 182          
BLAST of mRNA_H-paniculata_contig4153.10673.1 vs. uniprot
Match: A0A7S2NYX9_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2NYX9_9STRA)

HSP 1 Score: 110 bits (276), Expect = 7.840e-27
Identity = 65/131 (49.62%), Postives = 83/131 (63.36%), Query Frame = 1
Query:   34 ESKRQARVSQLMTSELAEILRLGHGIKTKDKIAD-DVRCKISVVDVDMSPDLRSAKVFVSVYGD------------VLEKREAYAWCVKNTKAIRRALAASLKDMKRVPELYFKDTDIGAAVDLMALIEKV 387
            +SKRQ RV QL+ SE+A I++LGH IK  D   D D+R +ISVV+ D+SPDLR A++ VSV               V+EKR AY+W VK+TK IR ALA  L  MK +P L F   D+GAAVD+M  I  +
Sbjct:   66 KSKRQFRVGQLVRSEIASIIKLGHEIKHTDGSLDSDLRLRISVVNADVSPDLRQARITVSVISKPNTDETAKLSDTVVEKRVAYSWLVKHTKNIRHALAQRLSHMKTIPNLTFAQADVGAAVDVMNKINNI 196          
BLAST of mRNA_H-paniculata_contig4153.10673.1 vs. uniprot
Match: A0A7S2UPV8_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UPV8_9STRA)

HSP 1 Score: 109 bits (273), Expect = 1.710e-26
Identity = 62/125 (49.60%), Postives = 83/125 (66.40%), Query Frame = 1
Query:   37 SKRQARVSQLMTSELAEILRLGHGIKTKDKIADDVRCKISVVDVDMSPDLRSAKVFVSVYGD--------VLEKREAYAWCVKNTKAIRRALAASLKDMKRVPELYFKDTDIGAAVDLMALIEKV 387
            SKRQ RV  L+ +E++ IL L H IK  D +  ++R +ISVV+VD+SPDL  A++ VS+ G         V+++R AY+W V++TK IR ALA  L  MK VP L F   D+GAAVD+M LIEKV
Sbjct:   63 SKRQERVGHLVRAEISSILTLSHEIKHSDYLEGELRKRISVVNVDVSPDLAQARITVSLVGGNHDTKEDAVVDQRRAYSWLVRSTKMIRHALAQRLSHMKGVPNLTFVLADVGAAVDVMQLIEKV 187          
BLAST of mRNA_H-paniculata_contig4153.10673.1 vs. uniprot
Match: A0A7S3VER5_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3VER5_9STRA)

HSP 1 Score: 105 bits (261), Expect = 2.380e-24
Identity = 73/178 (41.01%), Postives = 96/178 (53.93%), Query Frame = 1
Query:    1 MARGRSFRPSGE--SKRQARVSQLMTSELAEILRLGHGIK-TKDKIADDVRCKISVVDVDMSPDLRSAKVFVSVY-----------------------------------------GD-VLEKREAYAWCVKNTKAIRRALAASLKDMKRVPELYFKDTDIGAAVDLMALIEKVGAED 399
            MA GRS   S    SKRQ RV  ++ +E+A I++LGH IK +   I DD+R +I+VV  D+SPDLR A++ VS+                                          GD V+++R AY+W VKNTK IR AL+  LK MK +P+L F   D+GAAVD+M LIEKV A D
Sbjct:   48 MAYGRSTPISSRDRSKRQERVGHVVRTEIASIVQLGHQIKYSHGNIDDDLRRRINVVSADVSPDLRQARITVSIIKPTKCRVLEGEEDDXXXXXXXXXXXXXXXXEPKQVFTMNNSGDAVMDRRRAYSWLVKNTKQIRHALSQRLKHMKTIPDLTFVQADVGAAVDVMNLIEKVSAGD 225          
BLAST of mRNA_H-paniculata_contig4153.10673.1 vs. uniprot
Match: A0A7S3F0D2_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3F0D2_9EUKA)

HSP 1 Score: 102 bits (253), Expect = 4.610e-24
Identity = 61/126 (48.41%), Postives = 81/126 (64.29%), Query Frame = 1
Query:   52 RVSQLMTSELAEILRLG--HGIKTKDKIADDVRCKISVVDVDMSPDLRSAKVFVSVYGDVLEKREAYAWCVKNTKAIRRALAASLKDMKRVPELYFKDTDIGAAVDLMALIEKVGAEDDAAVAARG 423
            RV Q++ SELA +L  G  HG K   KI+  +   IS+VD+DMSPDLR+A+V VS+ GD  +K  A  W   + K IR  LA  LK MKR+P+L F+  D+GAAVD+M  I+++  E   A AARG
Sbjct:    3 RVGQVVRSELATVLHSGAVHGNK---KISGRLLSMISIVDIDMSPDLRNARVKVSIIGDRKDKISAVRWLQGSAKPIRHVLAQRLKGMKRIPQLSFQHVDVGAAVDMMVKIQELSEERQRAEAARG 125          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4153.10673.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LBD9_ECTSI3.300e-6973.01Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835ZHE8_9STRA4.850e-4667.80Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2DN30_9STRA6.760e-3956.06Hypothetical protein n=2 Tax=Dictyocha speculum Ta... [more]
A0A7S1U3D0_9STRA3.750e-3148.44Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7R9W0U4_9STRA3.260e-2950.39Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A7S2SUM5_9STRA6.370e-2748.44Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2NYX9_9STRA7.840e-2749.62Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S2UPV8_9STRA1.710e-2649.60Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A7S3VER5_9STRA2.380e-2441.01Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A7S3F0D2_9EUKA4.610e-2448.41Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4153contigH-paniculata_contig4153:6124..6636 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score223.8
Seed ortholog evalue6.2e-56
Seed eggNOG ortholog2880.D8LBD9
KEGG koko:K02834
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Ribosome-binding factor A
EggNOG OGs2CYHW@1,2S4H5@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009
Exons1
Model size513
Cds size513
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930265.843617-CDS-H-paniculata_contig4153:6123..66361622930265.843617-CDS-H-paniculata_contig4153:6123..6636Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4153 6124..6636 -
1691481216.8765697-CDS-H-paniculata_contig4153:6123..66361691481216.8765697-CDS-H-paniculata_contig4153:6123..6636Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4153 6124..6636 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4153.10673.1prot_H-paniculata_contig4153.10673.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4153 6124..6636 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4153.10673.1

>prot_H-paniculata_contig4153.10673.1 ID=prot_H-paniculata_contig4153.10673.1|Name=mRNA_H-paniculata_contig4153.10673.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=171bp
MARGRSFRPSGESKRQARVSQLMTSELAEILRLGHGIKTKDKIADDVRCK
ISVVDVDMSPDLRSAKVFVSVYGDVLEKREAYAWCVKNTKAIRRALAASL
KDMKRVPELYFKDTDIGAAVDLMALIEKVGAEDDAAVAARGGADGADDLG
EDDIYTFDFDEGDDEDEVEGF
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mRNA from alignment at H-paniculata_contig4153:6124..6636-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4153.10673.1 ID=mRNA_H-paniculata_contig4153.10673.1|Name=mRNA_H-paniculata_contig4153.10673.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=513bp|location=Sequence derived from alignment at H-paniculata_contig4153:6124..6636- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCGCGCGGAAGATCTTTTCGTCCGAGCGGAGAGTCGAAGAGACAGGC TCGCGTCTCGCAGCTCATGACCTCGGAGCTGGCGGAAATTTTGAGGCTGG GACACGGAATTAAGACGAAGGACAAGATAGCGGACGATGTACGATGCAAG ATATCCGTTGTTGATGTCGACATGTCACCGGACCTGCGGTCGGCTAAGGT ATTTGTGTCAGTCTACGGAGACGTGCTGGAGAAGCGAGAAGCATACGCGT GGTGTGTGAAGAACACAAAAGCGATTCGAAGGGCGCTAGCGGCGAGTTTG AAGGACATGAAGCGAGTGCCGGAGCTATACTTTAAGGACACGGACATCGG AGCGGCGGTAGATTTGATGGCGTTGATTGAGAAGGTCGGCGCGGAGGACG ATGCAGCTGTGGCGGCGAGGGGGGGTGCCGACGGCGCAGACGACTTGGGC GAAGATGACATATACACCTTTGACTTTGATGAAGGCGACGATGAGGACGA GGTGGAAGGGTTT
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Coding sequence (CDS) from alignment at H-paniculata_contig4153:6124..6636-

>mRNA_H-paniculata_contig4153.10673.1 ID=mRNA_H-paniculata_contig4153.10673.1|Name=mRNA_H-paniculata_contig4153.10673.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1026bp|location=Sequence derived from alignment at H-paniculata_contig4153:6124..6636- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCGCGCGGAAGATCTTTTCGTCCGAGCGGAGAGTCGAAGAGACAGGC
TCGCGTCTCGCAGCTCATGACCTCGGAGCTGGCGGAAATTTTGAGGCTGG
GACACGGAATTAAGACGAAGGACAAGATAGCGGACGATGTACGATGCAAG
ATATCCGTTGTTGATGTCGACATGTCACCGGACCTGCGGTCGGCTAAGGT
ATTTGTGTCAGTCTACGGAGACGTGCTGGAGAAGCGAGAAGCATACGCGT
GGTGTGTGAAGAACACAAAAGCGATTCGAAGGGCGCTAGCGGCGAGTTTG
AAGGACATGAAGCGAGTGCCGGAGCTATACTTTAAGGACACGGACATCGG
AGCGGCGGTAGATTTGATGGCGTTGATTGAGAAGGTCGGCGCGGAGGACG
ATGCAGCTGTGGCGGCGAGGGGGGGTGCCGACGGCGCAGACGACTTGGGC
GAAGATGACATATACACCTTTGACTTTGATGAAGGCGACGATGAGGACGA
GGTGGAAGGGTTTATGGCGCGCGGAAGATCTTTTCGTCCGAGCGGAGAGT
CGAAGAGACAGGCTCGCGTCTCGCAGCTCATGACCTCGGAGCTGGCGGAA
ATTTTGAGGCTGGGACACGGAATTAAGACGAAGGACAAGATAGCGGACGA
TGTACGATGCAAGATATCCGTTGTTGATGTCGACATGTCACCGGACCTGC
GGTCGGCTAAGGTATTTGTGTCAGTCTACGGAGACGTGCTGGAGAAGCGA
GAAGCATACGCGTGGTGTGTGAAGAACACAAAAGCGATTCGAAGGGCGCT
AGCGGCGAGTTTGAAGGACATGAAGCGAGTGCCGGAGCTATACTTTAAGG
ACACGGACATCGGAGCGGCGGTAGATTTGATGGCGTTGATTGAGAAGGTC
GGCGCGGAGGACGATGCAGCTGTGGCGGCGAGGGGGGGTGCCGACGGCGC
AGACGACTTGGGCGAAGATGACATATACACCTTTGACTTTGATGAAGGCG
ACGATGAGGACGAGGTGGAAGGGTTT
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