mRNA_H-paniculata_contig41460.10659.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig41460.10659.1
Unique NamemRNA_H-paniculata_contig41460.10659.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig41460.10659.1 vs. uniprot
Match: A0A6H5KNM8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNM8_9PHAE)

HSP 1 Score: 115 bits (288), Expect = 1.340e-27
Identity = 73/144 (50.69%), Postives = 88/144 (61.11%), Query Frame = 1
Query:    1 VLTPFFTDTSQDYVMTATLHIGCATEGATIYYTLEGGDP--------GKGAPGSREYDGKVVVSDIGPHTLRAIGTKDGMENSDIAQKDFMVEASERVATPKLTFDGD---VEPGHGEQAFLRNVTITMSCSTPNATIYYTTDG 399
            V TP FT T+Q  VM+ T HI C TEGATI YTL+G DP         + APG     G V V  IG  T+RA+ TK+GMENSD AQK   ++  ++V  P L F G+    +    E AFLR V ITM+CSTPNAT+ YTTDG
Sbjct:  295 VATPRFTGTAQHSVMSYTDHIECDTEGATIRYTLDGSDPVTTTTTSVHEVAPG-----GSVFVKTIGTVTIRAVATKEGMENSDEAQKTVTIQ--DQVEDPALFFAGESATADVTQEENAFLRTVAITMNCSTPNATVRYTTDG 431          
BLAST of mRNA_H-paniculata_contig41460.10659.1 vs. uniprot
Match: D8LI16_ECTSI (NAGPA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI16_ECTSI)

HSP 1 Score: 115 bits (287), Expect = 3.900e-27
Identity = 71/139 (51.08%), Postives = 84/139 (60.43%), Query Frame = 1
Query:    1 VLTPFFTDTSQDYVMTATLHIGCATEGATIYYTLEGGDPGKGAPGSREY---DGKVVVSDIGPHTLRAIGTKDGMENSDIAQKDFMVEASERVATPKLTFDGD---VEPGHGEQAFLRNVTITMSCSTPNATIYYTTDG 399
            V TP FT T+Q  VM+ T HI C TEGATI YTL+G DP      S       G V V  IG  T+RA+ TK+GMENSD AQK   ++  E+V  P L F G+    +    E AFLR V ITM+CSTPN T+ YTTDG
Sbjct:  278 VATPRFTGTAQHSVMSYTDHIECDTEGATIRYTLDGSDPVSTTTASVHEVPPGGSVFVKTIGTVTIRAVATKEGMENSDEAQKTITIQ--EQVEDPALFFAGESATADVTDEENAFLRTVAITMNCSTPNTTVRYTTDG 414          
BLAST of mRNA_H-paniculata_contig41460.10659.1 vs. uniprot
Match: A0A1H9B4M9_9FIRM (Putative cell wall binding repeat-containing protein n=1 Tax=Lachnospiraceae bacterium NE2001 TaxID=1520823 RepID=A0A1H9B4M9_9FIRM)

HSP 1 Score: 73.9 bits (180), Expect = 1.050e-12
Identity = 47/133 (35.34%), Postives = 69/133 (51.88%), Query Frame = 1
Query:    1 VLTPFFTDTSQDYVMTATLHIGCATEGATIYYTLEGGDPGKGAPGSREYDGKVVVSDIGPHTLRAIGTKDGMENSDIAQKDFMVEASERVATPKLTFDGDVEPGHGEQAFLRNVTITMSCSTPNATIYYTTDG 399
            V TP F+     Y    ++ I CAT+GA IYYT +G DP      S  Y   + V +    T++AI  K+GM +S +A+  + +     V TP  +      P  G   + +  T+T+SC+T +A IYYTTDG
Sbjct:  218 VATPTFSPVEGTYTSVQSVEIDCATDGAIIYYTTDGSDP---TISSSVYSAAISVDET--KTIKAIAVKEGMSDSAVAEATYTINIPV-VETPTFS------PAAG--TYTKTQTVTISCATEDAKIYYTTDG 336          
BLAST of mRNA_H-paniculata_contig41460.10659.1 vs. uniprot
Match: A0A3S0DUP1_9HYPH (DUF2793 domain-containing protein n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A3S0DUP1_9HYPH)

HSP 1 Score: 72.8 bits (177), Expect = 2.510e-12
Identity = 50/133 (37.59%), Postives = 69/133 (51.88%), Query Frame = 1
Query:    1 VLTPFFTDTSQDYVMTATLHIGCATEGATIYYTLEGGDPGKGAPGSREYDGKVVVSDIGPHTLRAIGTKDGMENSDIAQKDFMVEASERVATPKLTFDGDVEPGHGEQAFLRNVTITMSCSTPNATIYYTTDG 399
            V TP F+  +  Y  T ++ I C T GATIYYT +G  P      S  Y G + V+     T++A+  K GM +S +    + +  S+ VATP  +      P  G     ++VTI  SC+T  ATIYYTTDG
Sbjct:  507 VSTPTFSPAAGSYTGTQSVTISCTTSGATIYYTTDGSTP---TTSSSVYAGAISVAATA--TVKALAVKSGMADSAVGSAAYTITLSQ-VATPTFS------PAAGSYTGTQSVTI--SCATSGATIYYTTDG 625          
BLAST of mRNA_H-paniculata_contig41460.10659.1 vs. uniprot
Match: A0A7S1CJG4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CJG4_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 2.800e-12
Identity = 48/132 (36.36%), Postives = 74/132 (56.06%), Query Frame = 1
Query:   10 PFFTDTSQD--YVMTATLHIGCATEGATIYYTLEGGDPGKGAPGSREYDGKVVVSDIGPHTLRAIGTKDGMENSDIAQKDFMVEASERVATPKLTFDGDVEPGHGEQAFLRNVTITMSCSTPNATIYYTTDG 399
            P F   S D  +V++ T+ + CA++GAT+++T +G  P   +P    Y G    + IG  T +AIG K G  +S +A   F +   ++VA P ++ D    P  G   F  +VTIT++ +T  ATI+YTTDG
Sbjct:   82 PQFFPPSDDRTHVLSVTISLDCASDGATVHFTTDGSTPTAASP---VYSGPFEWTTIGVTTFKAIGVKAGDVDSPVAVAHFTI--LDKVADPVISTD----PA-GPPPFTTSVTITITTATDGATIHYTTDG 203          
BLAST of mRNA_H-paniculata_contig41460.10659.1 vs. uniprot
Match: A0A534KPI5_9EURY (Uncharacterized protein n=1 Tax=Euryarchaeota archaeon TaxID=2026739 RepID=A0A534KPI5_9EURY)

HSP 1 Score: 72.4 bits (176), Expect = 3.440e-12
Identity = 51/133 (38.35%), Postives = 72/133 (54.14%), Query Frame = 1
Query:    1 VLTPFFTDTSQDYVMTATLHIGCATEGATIYYTLEGGDPGKGAPGSREYDGKVVVSDIGPHTLRAIGTKDGMENSDIAQKDFMVEASERVATPKLTFDGDVEPGHGEQAFLRNVTITMSCSTPNATIYYTTDG 399
            V TP F+  +  Y  + T+ I  +T GATIYYT++G  P   +P    Y G V V+     T++A+    GM NS +A   + +    RVATP  +      PG G  +  R+V+I  S +TP ATIYYTT+G
Sbjct:  719 VATPAFSPAAGTYTSSVTVTISDSTAGATIYYTIDGSTPTTASP---VYAGSVTVTQA--TTVKAMAAASGMTNSAVASAPYTI----RVATPTFS------PGGGTYSGPRSVSI--SDTTPGATIYYTTNG 834          
BLAST of mRNA_H-paniculata_contig41460.10659.1 vs. uniprot
Match: A0A7I8DIB0_9FIRM (Chitinase n=1 Tax=Anaerocolumna chitinilytica TaxID=1727145 RepID=A0A7I8DIB0_9FIRM)

HSP 1 Score: 69.7 bits (169), Expect = 2.820e-11
Identity = 44/133 (33.08%), Postives = 65/133 (48.87%), Query Frame = 1
Query:    1 VLTPFFTDTSQDYVMTATLHIGCATEGATIYYTLEGGDPGKGAPGSREYDGKVVVSDIGPHTLRAIGTKDGMENSDIAQKDFMVEASERVATPKLTFDGDVEPGHGEQAFLRNVTITMSCSTPNATIYYTTDG 399
            V TP F+     Y  T  + I C+T G+TI YTL G +P      S  Y G + ++     T++A     GM +S  A   + +  ++  A P  +      P  G   +  N+ +T++CST NATI YTTDG
Sbjct:   86 VATPTFSPAGGTYTTTQNVTIACSTAGSTIRYTLNGSEP---TSSSTAYTGAIAIAST--TTVKAKAFASGMTDSQTASATYTINKADTTANPVFS------PAAG--TYYGNLNVTLTCSTSNATIRYTTDG 205          
BLAST of mRNA_H-paniculata_contig41460.10659.1 vs. uniprot
Match: UPI00051BF846 (chitobiase/beta-hexosaminidase C-terminal domain-containing protein n=1 Tax=Clostridium sp. KNHs205 TaxID=1449050 RepID=UPI00051BF846)

HSP 1 Score: 68.9 bits (167), Expect = 5.240e-11
Identity = 44/133 (33.08%), Postives = 66/133 (49.62%), Query Frame = 1
Query:    1 VLTPFFTDTSQDYVMTATLHIGCATEGATIYYTLEGGDPGKGAPGSREYDGKVVVSDIGPHTLRAIGTKDGMENSDIAQKDFMVEASERVATPKLTFDGDVEPGHGEQAFLRNVTITMSCSTPNATIYYTTDG 399
            V TP  +     Y  + ++ I C+T G+TI YTL+G +P      S  Y G + +S     T++A     GM +S  A   + +   + V+ P  T      P  G   +  N+ +T++CST NATI YTTDG
Sbjct:   86 VATPVLSPAGGTYTASQSVTITCSTAGSTIRYTLDGNEP---TASSTAYTGAITISATA--TVKAKAFASGMNDSQTASATYTINKPDTVSAPVFT------PAAG--TYYGNLNVTLTCSTSNATIRYTTDG 205          
BLAST of mRNA_H-paniculata_contig41460.10659.1 vs. uniprot
Match: UPI000694A2A9 (glycoside hydrolase family 3 C-terminal domain-containing protein n=1 Tax=Thermotoga profunda TaxID=1508420 RepID=UPI000694A2A9)

HSP 1 Score: 68.2 bits (165), Expect = 1.040e-10
Identity = 47/127 (37.01%), Postives = 68/127 (53.54%), Query Frame = 1
Query:   28 SQDYVMTATLHIGCATEGATIYYTLEGGDPGKGAPGSREYDGKVV---VSDIGPHTLRAIGTKDGMENSDIAQKDFMVEASERVATPKLTFDGDVEPGHGEQAFLRNVTITMSCSTPNATIYYTTDG 399
            S  Y +   + +  +T GA IYYT++G DP            +VV   +S     TL+ +  KDGME+SD+    +++    RV+TPK +      PG G+   L    IT+SC+TP ATIY+TTDG
Sbjct:   36 SGTYDLPQMVTVSSSTPGAQIYYTIDGTDP------LSSQTRRVVRWFISVNTSMTLKLVAVKDGMESSDVVTYQYII----RVSTPKAS------PGPGDWKKLPEK-ITLSCATPGATIYFTTDG 145          
BLAST of mRNA_H-paniculata_contig41460.10659.1 vs. uniprot
Match: A0A1V5URV1_9BACT (Putative kinase inhibitor protein n=1 Tax=bacterium ADurb.Bin243 TaxID=1866936 RepID=A0A1V5URV1_9BACT)

HSP 1 Score: 67.8 bits (164), Expect = 1.380e-10
Identity = 49/132 (37.12%), Postives = 69/132 (52.27%), Query Frame = 1
Query:    7 TPFFTDTSQDYVMTATLHIGCATEGATIYYTLEGGDPGKGAPGSREYDGKVVVSDIGPHTLRAIGTKDGMENSDIAQKDFMVEASE-RVATPKLTFDGDVEPGHGEQAFLRNVTITMSCSTPNATIYYTTDG 399
            TP F+  +  Y  T ++ I CAT  A IYYTL+G  P      S  Y G + VS     T++AI  K GM NSDIA  ++ +     +VA P  +    V  G     +    T+T++C+TP A IYY+T+G
Sbjct:  386 TPVFSIAAGTYAATQSVEITCATPNAKIYYTLDGTAP---TSSSTLYSGTLSVSITS--TIKAIAIKTGMANSDIAMANYTINIPALQVAKPVFS----VLAG----TYTTAQTLTITCATPGAIIYYSTNG 504          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig41460.10659.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KNM8_9PHAE1.340e-2750.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LI16_ECTSI3.900e-2751.08NAGPA domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A1H9B4M9_9FIRM1.050e-1235.34Putative cell wall binding repeat-containing prote... [more]
A0A3S0DUP1_9HYPH2.510e-1237.59DUF2793 domain-containing protein n=1 Tax=Hyphomic... [more]
A0A7S1CJG4_9STRA2.800e-1236.36Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A534KPI5_9EURY3.440e-1238.35Uncharacterized protein n=1 Tax=Euryarchaeota arch... [more]
A0A7I8DIB0_9FIRM2.820e-1133.08Chitinase n=1 Tax=Anaerocolumna chitinilytica TaxI... [more]
UPI00051BF8465.240e-1133.08chitobiase/beta-hexosaminidase C-terminal domain-c... [more]
UPI000694A2A91.040e-1037.01glycoside hydrolase family 3 C-terminal domain-con... [more]
A0A1V5URV1_9BACT1.380e-1037.12Putative kinase inhibitor protein n=1 Tax=bacteriu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig41460contigH-paniculata_contig41460:148..1013 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score115.2
Seed ortholog evalue2.4e-23
Seed eggNOG ortholog2880.D8LI16
Preferred nameNAGPA
KEGG koko:K01125
KEGG Pathwayko04142,map04142
Hectar predicted targeting categoryother localisation
GOsGO:0002790,GO:0003674,GO:0003824,GO:0003944,GO:0004553,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0005975,GO:0006464,GO:0006605,GO:0006622,GO:0006623,GO:0006807,GO:0006810,GO:0006886,GO:0006996,GO:0007033,GO:0007034,GO:0007040,GO:0007041,GO:0008104,GO:0008150,GO:0008152,GO:0009306,GO:0009987,GO:0015031,GO:0015833,GO:0015929,GO:0016020,GO:0016021,GO:0016043,GO:0016787,GO:0016798,GO:0019538,GO:0031224,GO:0031226,GO:0032940,GO:0033036,GO:0033299,GO:0033365,GO:0034613,GO:0036211,GO:0042886,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044425,GO:0044459,GO:0044464,GO:0045184,GO:0046903,GO:0046907,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0061462,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0072594,GO:0072665,GO:0072666,GO:0080171,GO:1901564
EggNOG free text desc.N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase
EggNOG OGs28JJ0@1,2QRY5@2759
EC3.1.4.45
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons2
Model size399
Cds size399
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930263.9951336-CDS-H-paniculata_contig41460:147..2851622930263.9951336-CDS-H-paniculata_contig41460:147..285Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig41460 148..285 -
1691481216.1112444-CDS-H-paniculata_contig41460:147..2851691481216.1112444-CDS-H-paniculata_contig41460:147..285Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig41460 148..285 -
1622930264.0154483-CDS-H-paniculata_contig41460:752..10131622930264.0154483-CDS-H-paniculata_contig41460:752..1013Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig41460 753..1013 -
1691481216.1311457-CDS-H-paniculata_contig41460:752..10131691481216.1311457-CDS-H-paniculata_contig41460:752..1013Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig41460 753..1013 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig41460.10659.1prot_H-paniculata_contig41460.10659.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig41460 148..1013 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig41460.10659.1

>prot_H-paniculata_contig41460.10659.1 ID=prot_H-paniculata_contig41460.10659.1|Name=mRNA_H-paniculata_contig41460.10659.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=133bp
VLTPFFTDTSQDYVMTATLHIGCATEGATIYYTLEGGDPGKGAPGSREYD
GKVVVSDIGPHTLRAIGTKDGMENSDIAQKDFMVEASERVATPKLTFDGD
VEPGHGEQAFLRNVTITMSCSTPNATIYYTTDG
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mRNA from alignment at H-paniculata_contig41460:148..1013-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig41460.10659.1 ID=mRNA_H-paniculata_contig41460.10659.1|Name=mRNA_H-paniculata_contig41460.10659.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=866bp|location=Sequence derived from alignment at H-paniculata_contig41460:148..1013- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGTTGACTCCCTTCTTCACGGACACTAGCCAAGACTACGTCATGACAGC AACCTTGCACATCGGCTGCGCCACAGAAGGGGCCACGATCTATTACACCC TGGAGGGCGGGGACCCCGGTAAAGGGGCGCCAGGATCGCGGGAGTACGAT GGTAAGGTGGTTGTGAGTGATATCGGACCGCACACGCTGCGTGCCATCGG TACAAAGGATGGGATGGAAAACTCGGACATTGCCCAGAAGGACTTCATGG TCGAGGCGAGTGTGCGTTTGTGTGTGTTTCTTATGTATATTCATTAACTA CGTGTGTTGTTACAGGTAAATGTAATGACTTTGTACTCACGTGACCAAAA TAGCGTGTACAGTATGGGTGCTGTGTGTGTAGTACAGATATGTATCATCT GATATAGGCGTTGATAAACCTGTTTCGAGAATCTACAGCTTCACCATAAC AATACCAGTACTAAATAGTTGTATAACGCTAATCCTGTAGGCATATGCAA GGATTCTTATTTGTAAATCATGTTAAAATACTGTACACTCGAACCGATGA GCCACCAGAGAAGAATGTGTGTTGCCCGCCTACCGTACGCAAATAGTCCC GGACATGACGAGATCAACTCTAGTCTACCCTGTGTGTACTACTGCAGTAC ATCTCTTCTTTTTTTTCCTGCATTTCAGCTGAACCCCCTCCCCCTCCTCC GCCCGCTCCGAATAACGCGCAAACGCAGGAACGAGTTGCTACTCCCAAAC TCACGTTCGACGGTGATGTGGAACCCGGCCATGGCGAGCAGGCCTTCCTC CGCAACGTGACTATCACTATGTCATGCTCCACGCCCAACGCGACCATCTA CTATACGACAGACGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig41460:148..1013-

>mRNA_H-paniculata_contig41460.10659.1 ID=mRNA_H-paniculata_contig41460.10659.1|Name=mRNA_H-paniculata_contig41460.10659.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=798bp|location=Sequence derived from alignment at H-paniculata_contig41460:148..1013- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGTTGACTCCCTTCTTCACGGACACTAGCCAAGACTACGTCATGACAGC
AACCTTGCACATCGGCTGCGCCACAGAAGGGGCCACGATCTATTACACCC
TGGAGGGCGGGGACCCCGGTAAAGGGGCGCCAGGATCGCGGGAGTACGAT
GGTAAGGTGGTTGTGAGTGATATCGGACCGCACACGCTGCGTGCCATCGG
TACAAAGGATGGGATGGAAAACTCGGACATTGCCCAGAAGGACTTCATGG
TCGAGGCGAGTGTGTTGACTCCCTTCTTCACGGACACTAGCCAAGACTAC
GTCATGACAGCAACCTTGCACATCGGCTGCGCCACAGAAGGGGCCACGAT
CTATTACACCCTGGAGGGCGGGGACCCCGGTAAAGGGGCGCCAGGATCGC
GGGAGTACGATGGTAAGGTGGTTGTGAGTGATATCGGACCGCACACGCTG
CGTGCCATCGGTACAAAGGATGGGATGGAAAACTCGGACATTGCCCAGAA
GGACTTCATGGTCGAGGCGAGTGAACGAGTTGCTACTCCCAAACTCACGT
TCGACGGTGATGTGGAACCCGGCCATGGCGAGCAGGCCTTCCTCCGCAAC
GTGACTATCACTATGTCATGCTCCACGCCCAACGCGACCATCTACTATAC
GACAGACGGGGAACGAGTTGCTACTCCCAAACTCACGTTCGACGGTGATG
TGGAACCCGGCCATGGCGAGCAGGCCTTCCTCCGCAACGTGACTATCACT
ATGTCATGCTCCACGCCCAACGCGACCATCTACTATACGACAGACGGG
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