mRNA_H-paniculata_contig4145.10657.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4145.10657.1
Unique NamemRNA_H-paniculata_contig4145.10657.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig4145.10657.1 vs. uniprot
Match: D7FKH7_ECTSI (40S ribosomal protein S3a n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKH7_ECTSI)

HSP 1 Score: 376 bits (965), Expect = 3.620e-126
Identity = 187/199 (93.97%), Postives = 194/199 (97.49%), Query Frame = 3 
Query:  177 GAEIASEGLKGRVFEFSLGDLNNDEDLGYRKIKLCCEDVQGTSVLTNFHGMDLTRDKLCSLIKKWQTLIEAQVDVRTTDGYLLRIACIGFTKKQDNQIKQTCYAQASQIRAVRKKMCDIMTEEATKCDLKELVQKFIPENISGEILKAVQSIYPMQNVYIRKVKALKKPKFDLTKLMEMHGDNTTEDVGMEMEREDEEE 773
            G +IASEGLKGRVFEFSLGDLN DEDLGYRK+KLCCEDVQGTSVLTNFHGMDLTRDKLCSLIKKWQTLIE QVDVRTTDGYLLRI+CIGFTKKQDNQIKQTCYAQASQIRAVRKKMCDIM+EEA+KCDL+ELV KFIPENISGEILKAVQSIYPMQNVYIRKVKALKKPKFDLTKLMEMHGDNTTED+GMEMEREDE E
Sbjct:   52 GTKIASEGLKGRVFEFSLGDLNADEDLGYRKVKLCCEDVQGTSVLTNFHGMDLTRDKLCSLIKKWQTLIEGQVDVRTTDGYLLRISCIGFTKKQDNQIKQTCYAQASQIRAVRKKMCDIMSEEASKCDLRELVLKFIPENISGEILKAVQSIYPMQNVYIRKVKALKKPKFDLTKLMEMHGDNTTEDIGMEMEREDEGE 250
[Close]
BLAST of mRNA_H-paniculata_contig4145.10657.1 vs. uniprot
Match: A0A7S2Y1J4_9STRA (40S ribosomal protein S3a n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y1J4_9STRA)

HSP 1 Score: 295 bits (755), Expect = 5.020e-94
Identity = 148/194 (76.29%), Postives = 168/194 (86.60%), Query Frame = 3 
Query:  177 GAEIASEGLKGRVFEFSLGDLNNDEDLGYRKIKLCCEDVQGTSVLTNFHGMDLTRDKLCSLIKKWQTLIEAQVDVRTTDGYLLRIACIGFTKKQDNQIKQTCYAQASQIRAVRKKMCDIMTEEATKCDLKELVQKFIPENISGEILKAVQSIYPMQNVYIRKVKALKKPKFDLTKLMEMHGDNTTEDVGMEMER 758
            G +IASEGL+GRVFEFSL DLN+DE+  YRKIKLC E+VQGTS LTNFHGMDLTRDKLCSLIKKWQTLIEA+VDV+TTDGY +R+ CIGFTK+  NQIK+T YAQASQ++A+RKKM DIMTEEA KCDLKELV KFIPE+IS EI KA Q I+P+QNV+IRKVK LKKP+FDL KLMEMHGD   EDVG  + R
Sbjct:   78 GTKIASEGLQGRVFEFSLADLNHDEEQAYRKIKLCVEEVQGTSCLTNFHGMDLTRDKLCSLIKKWQTLIEARVDVKTTDGYFMRLFCIGFTKRMPNQIKKTAYAQASQVKAIRKKMVDIMTEEAVKCDLKELVAKFIPESISTEIEKACQGIFPLQNVFIRKVKMLKKPRFDLIKLMEMHGDGG-EDVGAGVSR 270
[Close]
BLAST of mRNA_H-paniculata_contig4145.10657.1 vs. uniprot
Match: A0A835Z1K4_9STRA (40S ribosomal protein S3a n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1K4_9STRA)

HSP 1 Score: 289 bits (740), Expect = 4.070e-92
Identity = 143/194 (73.71%), Postives = 163/194 (84.02%), Query Frame = 3 
Query:  177 GAEIASEGLKGRVFEFSLGDLNNDEDLGYRKIKLCCEDVQGTSVLTNFHGMDLTRDKLCSLIKKWQTLIEAQVDVRTTDGYLLRIACIGFTKKQDNQIKQTCYAQASQIRAVRKKMCDIMTEEATKCDLKELVQKFIPENISGEILKAVQSIYPMQNVYIRKVKALKKPKFDLTKLMEMHGDNTTEDVGMEMER 758
            G +IASEGLKGRVFE SLGDLNNDE+ G+RKIKLCCEDVQGT+ LT FHGMDLTRDKLCSLIKKWQTLIEAQVDVRTTDGY LR+ CIGFTKK D Q+K TCYA+A+Q+RA+R+KM +IMT+E +KCDLKELVQKF+ + +S  I KA + I P+QNV IRK K LKKPKFDLTKLMEMH    TED G  + R
Sbjct:   53 GTKIASEGLKGRVFEVSLGDLNNDEEHGFRKIKLCCEDVQGTNCLTTFHGMDLTRDKLCSLIKKWQTLIEAQVDVRTTDGYYLRVFCIGFTKKTDGQVKATCYAKAAQVRAIRRKMTEIMTDECSKCDLKELVQKFVLDTVSERITKAARGIVPLQNVLIRKCKVLKKPKFDLTKLMEMH----TEDAGAAVAR 242
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BLAST of mRNA_H-paniculata_contig4145.10657.1 vs. uniprot
Match: A0A7S2W4V3_9STRA (40S ribosomal protein S3a n=2 Tax=Sar TaxID=2698737 RepID=A0A7S2W4V3_9STRA)

HSP 1 Score: 279 bits (714), Expect = 3.090e-88
Identity = 140/196 (71.43%), Postives = 160/196 (81.63%), Query Frame = 3 
Query:  177 GAEIASEGLKGRVFEFSLGDLNNDEDLGYRKIKLCCEDVQGTSVLTNFHGMDLTRDKLCSLIKKWQTLIEAQVDVRTTDGYLLRIACIGFTKKQDNQIKQTCYAQASQIRAVRKKMCDIMTEEATKCDLKELVQKFIPENISGEILKAVQSIYPMQNVYIRKVKALKKPKFDLTKLMEMHGDNTTEDVGMEMERED 764
            G +IASE LK RVFE SL DLN++ +L YRKI+LCC+DVQG  VLTNFHGMD+TRDKLCSLIKKWQTLIEA+VDVRTTDGY LR+ CIGFT+K  NQIK+T YAQA Q+R +RKKM DIMT E  KCDLKELV KF+ E I  EI KA + IYP+QN YIRKVK LKKPKFDL KLME+H D T  DVG +++RED
Sbjct:   51 GTKIASETLKNRVFEVSLADLNDNAELAYRKIRLCCDDVQGDKVLTNFHGMDMTRDKLCSLIKKWQTLIEARVDVRTTDGYTLRLFCIGFTQKNKNQIKKTWYAQAGQVRQIRKKMVDIMTAECVKCDLKELVAKFVAETIGKEIEKAAEGIYPIQNCYIRKVKLLKKPKFDLVKLMELHAD-TGNDVGAKVDRED 245
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BLAST of mRNA_H-paniculata_contig4145.10657.1 vs. uniprot
Match: A0A812NHF5_SYMMI (40S ribosomal protein S3a n=2 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812NHF5_SYMMI)

HSP 1 Score: 276 bits (706), Expect = 5.260e-87
Identity = 145/198 (73.23%), Postives = 165/198 (83.33%), Query Frame = 3 
Query:  177 GAEIASEGLKGRVFEFSLGDLNN-DEDLGYRKIKLCCEDVQGTSVLTNFHGMDLTRDKLCSLIKKWQTLIEAQVDVRTTDGYLLRIACIGFTKKQDNQ-IKQTCYAQASQIRAVRKKMCDIMTEEATKCDLKELVQKF--IPENISGEILKAVQSIYPMQNVYIRKVKALKKPKFDLTKLMEMHGDNTTEDVGMEMER 758
            G +IASEGLKGRVFE SL DLN  DE  GYRKIKL CEDV G  VLTNFHGMD+TRDKLCSLI+KWQTLIEA VDVRTTDGY+LR+ CIGFTKKQ NQ  K TCYAQ+ Q+RA+R+KM DIMTEEA+KCDLKELVQKF  +PE+I  EI KA QSI+P+QNV IRKVK L+KPKFDL KLME+HGD+  ED G  +++
Sbjct:   49 GTKIASEGLKGRVFEVSLADLNGGDESQGYRKIKLVCEDVNGYEVLTNFHGMDITRDKLCSLIRKWQTLIEAFVDVRTTDGYVLRMFCIGFTKKQGNQQAKSTCYAQSGQVRAIRRKMFDIMTEEASKCDLKELVQKFCSMPESIGHEIEKACQSIFPLQNVCIRKVKVLRKPKFDLVKLMELHGDSG-EDTGAALDK 245
[Close]
BLAST of mRNA_H-paniculata_contig4145.10657.1 vs. uniprot
Match: A0A7S1TRR2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TRR2_9STRA)

HSP 1 Score: 273 bits (697), Expect = 1.260e-85
Identity = 129/185 (69.73%), Postives = 158/185 (85.41%), Query Frame = 3 
Query:  177 GAEIASEGLKGRVFEFSLGDLNNDEDLGYRKIKLCCEDVQGTSVLTNFHGMDLTRDKLCSLIKKWQTLIEAQVDVRTTDGYLLRIACIGFTKKQDNQIKQTCYAQASQIRAVRKKMCDIMTEEATKCDLKELVQKFIPENISGEILKAVQSIYPMQNVYIRKVKALKKPKFDLTKLMEMHGDNTT 731
            G +IAS+ LKGRVFE +L DLN DED  YRKI+L CEDVQG +VLTNFHGMD+TRDK+CS+I+KWQTLIEA+ DVRTTDGY+LR+ CIGFTKK  +Q+K+ CYAQ+SQI+A+R++M + MTEEA+KCDL+ELV KFIPE I  +I KA Q+IYP+QNV+IRKVK LKKPKFD+ K ME+HGD  T
Sbjct:   70 GTKIASDALKGRVFEVNLADLNKDEDRAYRKIRLVCEDVQGDNVLTNFHGMDMTRDKICSVIRKWQTLIEARCDVRTTDGYILRMFCIGFTKKSQDQLKKACYAQSSQIKAIRRRMVERMTEEASKCDLRELVLKFIPEVIGEDIEKACQNIYPLQNVFIRKVKVLKKPKFDIVKFMELHGDMAT 254
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BLAST of mRNA_H-paniculata_contig4145.10657.1 vs. uniprot
Match: RS3A_ORYSJ (40S ribosomal protein S3a n=56 Tax=Poaceae TaxID=4479 RepID=RS3A_ORYSJ)

HSP 1 Score: 270 bits (689), Expect = 1.880e-84
Identity = 135/200 (67.50%), Postives = 161/200 (80.50%), Query Frame = 3 
Query:  177 GAEIASEGLKGRVFEFSLGDLNNDEDLGYRKIKLCCEDVQGTSVLTNFHGMDLTRDKLCSLIKKWQTLIEAQVDVRTTDGYLLRIACIGFTKKQDNQIKQTCYAQASQIRAVRKKMCDIMTEEATKCDLKELVQKFIPENISGEILKAVQSIYPMQNVYIRKVKALKKPKFDLTKLMEMHGDNTTEDVGMEMEREDEEEA 776
            G +IASEGLK RVFE SL DL NDED  YRKI+L  EDVQG +VLTNF GM  T DKL SL+KKWQTLIEA VDV+TTDGY+LR+ CIGFTK++ NQ+K+TCYAQASQIR +R+KM +IM  +A+ CDLKELV KFIPE I  EI KA  SI+P+QNV++RKVK LK PKFDL KLME+HGD   ED+G +++R  E+EA
Sbjct:   53 GTKIASEGLKHRVFEVSLADLQNDEDQAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVKKWQTLIEAHVDVKTTDGYMLRLFCIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMANQASSCDLKELVSKFIPEVIGKEIEKATSSIFPLQNVFVRKVKILKAPKFDLGKLMEVHGDYAKEDIGTKLDRPAEDEA 252
[Close]
BLAST of mRNA_H-paniculata_contig4145.10657.1 vs. uniprot
Match: F0YJC6_AURAN (40S ribosomal protein S3a n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YJC6_AURAN)

HSP 1 Score: 268 bits (686), Expect = 6.670e-84
Identity = 134/199 (67.34%), Postives = 156/199 (78.39%), Query Frame = 3 
Query:  177 GAEIASEGLKGRVFEFSLGDLNNDEDLGYRKIKLCCEDVQGTSVLTNFHGMDLTRDKLCSLIKKWQTLIEAQVDVRTTDGYLLRIACIGFTKKQDNQIKQTCYAQASQIRAVRKKMCDIMTEEATKCDLKELVQKFIPENISGEILKAVQSIYPMQNVYIRKVKALKKPKFDLTKLMEMHGDNTTEDVGMEMEREDEEE 773
            G +IAS+ LKGRVF+ SL DLNNDED  YRKIKL CED+QG + LTNFHGMD+TRDKL SLIKKWQTLIE  VDV+TTDGY LR+ CI FT K  NQI + CYA ++Q+R +RKKM +IM +EATKCDLKELV K IPE +  EI KA   I+P+QNV++RKVK LKKPKFDLTKLME+HGD   ED G  + RE E E
Sbjct:   53 GTKIASDALKGRVFDLSLADLNNDEDQTYRKIKLVCEDIQGYNCLTNFHGMDMTRDKLASLIKKWQTLIEGNVDVKTTDGYTLRMFCIAFTTKMPNQIAKMCYANSAQVRLIRKKMVEIMRDEATKCDLKELVLKLIPEYMGTEIEKACAGIFPLQNVFVRKVKVLKKPKFDLTKLMELHGDAGNEDSGAAVPREGEGE 251
[Close]
BLAST of mRNA_H-paniculata_contig4145.10657.1 vs. uniprot
Match: A0A7S2AV79_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2AV79_9STRA)

HSP 1 Score: 266 bits (679), Expect = 6.760e-84
Identity = 129/184 (70.11%), Postives = 152/184 (82.61%), Query Frame = 3 
Query:  216 FEFSLGDLNNDEDLGYRKIKLCCEDVQGTSVLTNFHGMDLTRDKLCSLIKKWQTLIEAQVDVRTTDGYLLRIACIGFTKKQDNQIKQTCYAQASQIRAVRKKMCDIMTEEATKCDLKELVQKFIPENISGEILKAVQSIYPMQNVYIRKVKALKKPKFDLTKLMEMHGDNTTEDVGMEMEREDE 767
            FE SL D NNDED  YRKIKLCCEDVQG +VLTNFHGMDLTRDKLCSLIKKW +LIEA  DVRTTDGY+LR+ CI FT K  NQ+K+TCYAQ++QIRA+RKKM ++MTEEA+KCDL+ELVQK IPE+I  EI K  Q ++P+++ +IRKVK LKKPKFD+TKLMEMHGD   ED G  + R +E
Sbjct:    1 FEVSLADRNNDEDQQYRKIKLCCEDVQGFNVLTNFHGMDLTRDKLCSLIKKWGSLIEANADVRTTDGYMLRLFCIAFTTKMPNQMKKTCYAQSAQIRAIRKKMVNVMTEEASKCDLRELVQKLIPESIGAEIEKVCQCVFPLRDTFIRKVKVLKKPKFDITKLMEMHGDVAGEDTGTGVNRGEE 184
[Close]
BLAST of mRNA_H-paniculata_contig4145.10657.1 vs. uniprot
Match: RS3A2_ARATH (40S ribosomal protein S3a-2 n=77 Tax=Brassicales TaxID=3699 RepID=RS3A2_ARATH)

HSP 1 Score: 268 bits (685), Expect = 7.480e-84
Identity = 138/206 (66.99%), Postives = 163/206 (79.13%), Query Frame = 3 
Query:  177 GAEIASEGLKGRVFEFSLGDLNNDEDLGYRKIKLCCEDVQGTSVLTNFHGMDLTRDKLCSLIKKWQTLIEAQVDVRTTDGYLLRIACIGFTKKQDNQIKQTCYAQASQIRAVRKKMCDIMTEEATKCDLKELVQKFIPENISGEILKAVQSIYPMQNVYIRKVKALKKPKFDLTKLMEMHGDNTTEDVGMEMEREDEEEAGEDDNE 794
            G +IASEGLK RVFE SL DL NDED  YRKI+L  EDVQG +VLT F GMD T DKL SL+KKWQTLIEA VDV+TTDGY LR+ CI FTK++ NQ+K+TCYAQ+SQIR +R+KM +IM +EA+ CDLKELV KFIPE I  EI KA Q IYP+QNV+IRKVK LK PKFDL KLME+HGD T EDVG++++R  +E   E+  E
Sbjct:   53 GTKIASEGLKHRVFEVSLADLQNDEDNAYRKIRLRAEDVQGRNVLTQFWGMDFTTDKLRSLVKKWQTLIEAHVDVKTTDGYTLRMFCIAFTKRRANQVKRTCYAQSSQIRQIRRKMSEIMVKEASSCDLKELVAKFIPEAIGREIEKATQGIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYTAEDVGVKVDRPADETMVEEPTE 258
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4145.10657.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FKH7_ECTSI3.620e-12693.9740S ribosomal protein S3a n=2 Tax=Ectocarpus TaxID... [more]
A0A7S2Y1J4_9STRA5.020e-9476.2940S ribosomal protein S3a n=1 Tax=Fibrocapsa japon... [more]
A0A835Z1K4_9STRA4.070e-9273.7140S ribosomal protein S3a n=1 Tax=Tribonema minus ... [more]
A0A7S2W4V3_9STRA3.090e-8871.4340S ribosomal protein S3a n=2 Tax=Sar TaxID=269873... [more]
A0A812NHF5_SYMMI5.260e-8773.2340S ribosomal protein S3a n=2 Tax=Symbiodinium mic... [more]
A0A7S1TRR2_9STRA1.260e-8569.73Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
RS3A_ORYSJ1.880e-8467.5040S ribosomal protein S3a n=56 Tax=Poaceae TaxID=4... [more]
F0YJC6_AURAN6.670e-8467.3440S ribosomal protein S3a n=1 Tax=Aureococcus anop... [more]
A0A7S2AV79_9STRA6.760e-8470.11Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
RS3A2_ARATH7.480e-8466.9940S ribosomal protein S3a-2 n=77 Tax=Brassicales T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4145contigH-paniculata_contig4145:12445..15679 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score378.6
Seed ortholog evalue2e-102
Seed eggNOG ortholog2880.D7FKH7
Preferred nameRS3A
KEGG rclassRC00434
KEGG koko:K01807,ko:K02984
KEGG ReactionR01056
KEGG Pathwayko00030,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko03010,map00030,map00710,map01100,map01110,map01120,map01130,map01200,map01230,map03010
KEGG ModuleM00004,M00007,M00165,M00167,M00177,M00179,M00580
Hectar predicted targeting categoryother localisation
GOsGO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005829,GO:0005840,GO:0005844,GO:0005886,GO:0005911,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009506,GO:0009507,GO:0009536,GO:0009987,GO:0010467,GO:0015935,GO:0016020,GO:0019538,GO:0022626,GO:0022627,GO:0030054,GO:0030312,GO:0031974,GO:0031981,GO:0032991,GO:0034641,GO:0034645,GO:0042788,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0055044,GO:0070013,GO:0071704,GO:0071944,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904
EggNOG free text desc.structural constituent of ribosome
EggNOG OGsCOG1890@1,KOG1628@2759
EC5.3.1.6
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko01000,ko03011
Exons5
Model size1427
Cds size687
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930263.6179574-UTR-H-paniculata_contig4145:12444..125571622930263.6179574-UTR-H-paniculata_contig4145:12444..12557Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4145 12445..12557 +
1691481215.93858-UTR-H-paniculata_contig4145:12444..125571691481215.93858-UTR-H-paniculata_contig4145:12444..12557Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4145 12445..12557 +
1622930263.7334096-UTR-H-paniculata_contig4145:15052..156791622930263.7334096-UTR-H-paniculata_contig4145:15052..15679Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4145 15053..15679 +
1691481216.020346-UTR-H-paniculata_contig4145:15052..156791691481216.020346-UTR-H-paniculata_contig4145:15052..15679Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4145 15053..15679 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930263.6324654-CDS-H-paniculata_contig4145:12557..127011622930263.6324654-CDS-H-paniculata_contig4145:12557..12701Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4145 12558..12701 +
1691481215.9521284-CDS-H-paniculata_contig4145:12557..127011691481215.9521284-CDS-H-paniculata_contig4145:12557..12701Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4145 12558..12701 +
1622930263.645791-CDS-H-paniculata_contig4145:13421..135951622930263.645791-CDS-H-paniculata_contig4145:13421..13595Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4145 13422..13595 +
1691481215.9618154-CDS-H-paniculata_contig4145:13421..135951691481215.9618154-CDS-H-paniculata_contig4145:13421..13595Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4145 13422..13595 +
1622930263.6659455-CDS-H-paniculata_contig4145:13823..139751622930263.6659455-CDS-H-paniculata_contig4145:13823..13975Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4145 13824..13975 +
1691481215.9720366-CDS-H-paniculata_contig4145:13823..139751691481215.9720366-CDS-H-paniculata_contig4145:13823..13975Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4145 13824..13975 +
1622930263.689761-CDS-H-paniculata_contig4145:14342..144521622930263.689761-CDS-H-paniculata_contig4145:14342..14452Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4145 14343..14452 +
1691481215.9897876-CDS-H-paniculata_contig4145:14342..144521691481215.9897876-CDS-H-paniculata_contig4145:14342..14452Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4145 14343..14452 +
1622930263.7157001-CDS-H-paniculata_contig4145:14945..150521622930263.7157001-CDS-H-paniculata_contig4145:14945..15052Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4145 14946..15052 +
1691481216.008559-CDS-H-paniculata_contig4145:14945..150521691481216.008559-CDS-H-paniculata_contig4145:14945..15052Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4145 14946..15052 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4145.10657.1prot_H-paniculata_contig4145.10657.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4145 12558..15052 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4145.10657.1

>prot_H-paniculata_contig4145.10657.1 ID=prot_H-paniculata_contig4145.10657.1|Name=mRNA_H-paniculata_contig4145.10657.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=229bp
MSCLSPSCHLRCDAADEWMDNGAEIASEGLKGRVFEFSLGDLNNDEDLGY
RKIKLCCEDVQGTSVLTNFHGMDLTRDKLCSLIKKWQTLIEAQVDVRTTD
GYLLRIACIGFTKKQDNQIKQTCYAQASQIRAVRKKMCDIMTEEATKCDL
KELVQKFIPENISGEILKAVQSIYPMQNVYIRKVKALKKPKFDLTKLMEM
HGDNTTEDVGMEMEREDEEEAGEDDNEE*
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mRNA from alignment at H-paniculata_contig4145:12445..15679+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4145.10657.1 ID=mRNA_H-paniculata_contig4145.10657.1|Name=mRNA_H-paniculata_contig4145.10657.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3235bp|location=Sequence derived from alignment at H-paniculata_contig4145:12445..15679+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGTTGAAGCAAGCCCCAAACGGAGATAATATACAAGATGTCAATAAGTAA
GTGGGATGTAGTATCATCGCCAGTGATTCGAGAACGATCGAGTGCGAATA
CAAAACCTGATGTATGAGCTGTCTGTCCCCATCGTGTCATCTTCGATGCG
ACGCGGCTGATGAATGGATGGATAACGGAGCAGAGATCGCGTCTGAAGGG
TTGAAAGGACGTGTATTCGAGTTTTCACTTGGAGACTTGAACAACGACGA
GGACCTGGTGAGTGCCAGTCTACGAGTGATCGATGCAGAGTAATCACGCT
CCGCTTGTGGGGCAATTGGCACGAGTTATCACATTCAAGTATACGTGCTC
TATCAATCACTGTATAGTTACGAAGCATTTGAAGTGTCAGCGACATTTTT
TTTTTCCTGTTGCAGTGCCTGACCCTACACACAGAGGGTAGGGACTCCTG
AGTTGATTTTGTTCGGGTACATGAAGGCAAAATGCGGAGATGTGAGGTTG
GGTTGCTATCACATTTCGCCAACAGGATTATTTGTTTTTAAAGATATGAC
ATGTAATGAGTGACCCATCAAGACACGCTATGGTACGCTGAATTTGTGTC
AGATGCTTTTTTTTGGTGTACATCTACTTAACACGCGCTTACACGCAGGT
ACCTTACGTCCCGAGTTGATGTTAGCATATCGCAAGCGGCTACTGGGTGT
TGGCTGAGGGTCAAAGTTTCACGTACATCGACAGGAAACATGGTCATATT
CCCACCAACTTGGGCTCGAGTGTTATTCTAGCTTGCTTTGCTCCACCTTT
TTTTATCGTGTACCGTTAGACTTACCCACGTTTCTCAACGTGAAAGATCT
CGTTACTAGAATCCATGAAGTATTTATTCCATCAGCTCCATGCAATGTGT
CCATGAACTGGACGCCACTGGACCTCCGTCTAATATCAACTGCCCTGTGA
TGGCTTTGCGTATCTCTTCACATGCAGGGGTACCGGAAGATCAAGCTTTG
TTGTGAGGATGTTCAGGGCACTTCTGTCTTGACCAACTTTCACGGAATGG
ATCTTACCCGCGACAAGCTCTGCTCTTTGATCAAAAAGTGGCAGACGCTA
ATCGAGGCGCAGGTGGACGTGCGCACCACCGACGGATACCTTCTCCGCAT
CGTAAGTACAGTCATGCTCACATGAAGCCAAACCGTCAAAGACGAAAGCA
TTCAAACACGTGGGAGGGTGTGCTTTCTTATCGAGCGCGCTTTTTACGTC
TGGCAGGTCGTCGACCTTTCTCAAATTTCCCTAGTATTCGAATGTGAAAG
TAGATGACCAAAATAGTGATCAATTGAGCATGATGAGATTCCCGTCCGGA
ATGCGGGTCTACTCTTGAACGTTAACCAGGCATGCATCGGCTTCACCAAG
AAGCAGGACAACCAAATCAAGCAGACATGCTACGCGCAGGCGTCGCAGAT
CCGAGCTGTCCGCAAAAAGATGTGTGACATCATGACGGAGGAGGCAACCA
AGTGTGACCTTAAGGAGCTCGTCCAGAAGTTGTAAGTGAACTATTCGACG
CTCAAGAATGTAGGTTACTACTTTGCGATGATGTCGATACCTTAGGCCTT
GCCCCCCTGACATTTGATGAGGTAATATTTCATAATTTGATTTTCTGGAG
ACGGCACAATGCTTGGTTGAATAAAGTCTTCAGTAGGCTGGATGTGCTTT
GATCATGCGAATTGGGAGATGACACGATAGAGTTCGTAGCTGGAACTTTC
GAAGACTAGACAAATTGTTCACATACGTGGTAATCTCAAGGTAGCCTTTT
TCCCCCGATATGAGGTGTATGATTTGGCATCAGATGCCTCATGATGCGTA
TCGTTCCAAACTTCGTTGTTTTCCCTTTCCCCCGTTTGATATACGCAGTA
TCCCCGAAAACATCTCTGGGGAGATTCTCAAGGCCGTGCAGAGCATCTAC
CCCATGCAAAACGTCTATATTCGCAAAGTGAAGGCGCTCAAGAAGCCCAA
GTTCGACCGTAAGTCTATTTGAGTGTTGTCTCGGATTTGCACTTGAATTT
TTGATGAGTTTTCCGTCGATATGTAAGGTGGTATCCTGAACACGGTATCA
ATTGATGCTTGGAAACCGAACACACAATGAAGACGCGCTCAAAAATATTG
TTTTTGGTCGTGTTGGACTTCGGTAAGATGGATGACTAACTGGGTCATGT
GAGCGTTGAGGTCTTTACCTGTCAAGTTCCGGTCCGTCTTCGAGCTCATC
ACGGAAATTTTTAAATATAGCCCCTGCGAGTATTTTATTATATCCACATG
GGCTCCATATTCCATATACATTTGAATTGAATTCGGTCCAAGTGAGGTCG
AAGGTGACCAAGTCCAAATAATATCTCGTTGGTCGAATTATATTATGGGC
CGCCATGAAAAGCGATGGGAAACGGGGAACTTGAAGTGCTGACGCTGTAT
CTCATTTTCCTTGCTCTGGTATTTCCCAACATGGGCGTGATTCTACTGCA
GTCACTAAGCTGATGGAGATGCACGGTGACAACACCACCGAGGACGTGGG
GATGGAGATGGAGAGGGAAGACGAGGAAGAGGCTGGGGAGGATGATAACG
AAGAGTAGACTGCTTCCTCTCTATTTCTCTGTCCACTCAAAGACGTCTGC
AACGCTGTTTTGGCCTGGGATTCTTCAACCCTTTAGTTTGCACCTTGTGT
CCGATGACTCTGTCTCTGGCCACATGGAAAGAGTCCACGTGGCTAGAAGT
CCGCACATCTATCTGTGCGGTTTCGGTGCGAAGGGATATCTGATGTTTTC
GGGGGATTGAAGAATCATGGGGTGGCCGGAAAGGTGTTGGGGGACACTTT
TTCCTGCCGGCGATCGGTGTCGCTGCATCGATCGTGCTAATTAATGCGAG
CTCACAGAACCAAAAAGAAAGATGTGTATCGTACAACTGGTGAAGATGGA
AAACGAGGTACAACTCGTGATTTGTCCCTACATCCGCAAGGGTCTGCCTT
GCTCTGGGTCACCATGTACTGCGTAACGAACGTGAAGAACGAGACATGGC
TTTTGACATGTGTCCAGACTGGCAACGTCGACCACTACCTCACTGTCCTG
ATGGTTCGTGTACCATATTCTTCTGGATAGTAAATTATGTCCATGAGTCC
TGCTCCTGTTAAAAAACTTACTAGGATGGAAAGTTTGCTCATTCATCCCT
TCATGTTTGGCTGCTTCTCACAGTTCATTACCCTG
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Coding sequence (CDS) from alignment at H-paniculata_contig4145:12445..15679+

>mRNA_H-paniculata_contig4145.10657.1 ID=mRNA_H-paniculata_contig4145.10657.1|Name=mRNA_H-paniculata_contig4145.10657.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1374bp|location=Sequence derived from alignment at H-paniculata_contig4145:12445..15679+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGCTGTCTGTCCCCATCGTGTCATCTTCGATGCGACGCGGCTGATGA
ATGGATGGATAACGGAGCAGAGATCGCGTCTGAAGGGTTGAAAGGACGTG
TATTCGAGTTTTCACTTGGAGACTTGAACAACGACGAGGACCTGATGAGC
TGTCTGTCCCCATCGTGTCATCTTCGATGCGACGCGGCTGATGAATGGAT
GGATAACGGAGCAGAGATCGCGTCTGAAGGGTTGAAAGGACGTGTATTCG
AGTTTTCACTTGGAGACTTGAACAACGACGAGGACCTGGGGTACCGGAAG
ATCAAGCTTTGTTGTGAGGATGTTCAGGGCACTTCTGTCTTGACCAACTT
TCACGGAATGGATCTTACCCGCGACAAGCTCTGCTCTTTGATCAAAAAGT
GGCAGACGCTAATCGAGGCGCAGGTGGACGTGCGCACCACCGACGGATAC
CTTCTCCGCATCGGGTACCGGAAGATCAAGCTTTGTTGTGAGGATGTTCA
GGGCACTTCTGTCTTGACCAACTTTCACGGAATGGATCTTACCCGCGACA
AGCTCTGCTCTTTGATCAAAAAGTGGCAGACGCTAATCGAGGCGCAGGTG
GACGTGCGCACCACCGACGGATACCTTCTCCGCATCGCATGCATCGGCTT
CACCAAGAAGCAGGACAACCAAATCAAGCAGACATGCTACGCGCAGGCGT
CGCAGATCCGAGCTGTCCGCAAAAAGATGTGTGACATCATGACGGAGGAG
GCAACCAAGTGTGACCTTAAGGAGCTCGTCCAGAAGTTGCATGCATCGGC
TTCACCAAGAAGCAGGACAACCAAATCAAGCAGACATGCTACGCGCAGGC
GTCGCAGATCCGAGCTGTCCGCAAAAAGATGTGTGACATCATGACGGAGG
AGGCAACCAAGTGTGACCTTAAGGAGCTCGTCCAGAAGTTTATCCCCGAA
AACATCTCTGGGGAGATTCTCAAGGCCGTGCAGAGCATCTACCCCATGCA
AAACGTCTATATTCGCAAAGTGAAGGCGCTCAAGAAGCCCAAGTTCGACC
TATCCCCGAAAACATCTCTGGGGAGATTCTCAAGGCCGTGCAGAGCATCT
ACCCCATGCAAAACGTCTATATTCGCAAAGTGAAGGCGCTCAAGAAGCCC
AAGTTCGACCTCACTAAGCTGATGGAGATGCACGGTGACAACACCACCGA
GGACGTGGGGATGGAGATGGAGAGGGAAGACGAGGAAGAGGCTGGGGAGG
ATGATAACGAAGAGTAGTCACTAAGCTGATGGAGATGCACGGTGACAACA
CCACCGAGGACGTGGGGATGGAGATGGAGAGGGAAGACGAGGAAGAGGCT
GGGGAGGATGATAACGAAGAGTAG
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