mRNA_H-paniculata_contig4145.10656.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig4145.10656.1 vs. uniprot
Match: D7FKJ3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKJ3_ECTSI) HSP 1 Score: 368 bits (944), Expect = 1.220e-116 Identity = 212/341 (62.17%), Postives = 244/341 (71.55%), Query Frame = 2
Query: 125 AVALCVTGCTVVTEAFQTSFIVTSSSSLQRTAATHRSRTSLPRPVATGSHVSSDKTSACGHGSD---------RVTM------NLSRNELLKQVGLGFATLVVTAATGAAPAGAATGSAMEVMRLRFGDKLRRASTMLDELQDDIFNDDWDLVATYPNAFRSLVPVFTKYTDAAFPGDNPVDTTSRVALRYEVGRFFGAVERLKRAAEEQNQKEAQKAFAAMSVAYDRYLKAGNLYQNYDSVTSTEGLYASISKDDLRFLPPSKDPPKIKDNVLMLAGPDKGKTGYLIGMENAVRADLGGQAKAIVKLETSSTLGVREIKVVPLDYVAKTMEQTGLPKSPT 1102
AV L GC T AFQ S + LQR A R T + + +AC GS+ R T+ ++SR + KQ GL A + + ATGAAPA A GSA+EVMRLRFGDKLRRA+ MLDELQDDI N DWDLV TYPNAFR+LVPVFTKYTDAAFP D+PVDTTSRVALRYEVGRF+GAVERLKRAAE+QN +EAQ AFAAMSVAYDRYLKAGNLY YDSVTSTEG YA +S L+++PPSKDPPKIKDNVL++AGPDKGKTG++IG+E + KAIVKLETSS LG+REIKVVPLDYVAKT++Q G+ S T
Sbjct: 7 AVTLACAGCLSGTAAFQASLF--QGAPLQRARAAAAVRDGASTATTTADASARTQRTAC-RGSNGXXXXSVGTRTTVVMDGGGSVSRLDFFKQAGLSLAAVAMGGATGAAPAKAQAGSAVEVMRLRFGDKLRRAAKMLDELQDDISNSDWDLVTTYPNAFRTLVPVFTKYTDAAFPTDDPVDTTSRVALRYEVGRFYGAVERLKRAAEQQNSREAQSAFAAMSVAYDRYLKAGNLYDGYDSVTSTEGFYADVSNSSLKYVPPSKDPPKIKDNVLLVAGPDKGKTGFMIGVEGGSLS----ATKAIVKLETSSALGMREIKVVPLDYVAKTVDQQGMFNSKT 340
BLAST of mRNA_H-paniculata_contig4145.10656.1 vs. uniprot
Match: A0A7S3Y3I2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y3I2_HETAK) HSP 1 Score: 247 bits (630), Expect = 2.370e-71 Identity = 136/231 (58.87%), Postives = 163/231 (70.56%), Query Frame = 2
Query: 404 AAPAGAATGSAMEVMRLRFGDKLRRASTMLDELQDDIFNDDWDLVATYPNAFRSLVPVFTKYTDAAFPGDNPVDTTSRVALRYEVGRFFGAVERLKRAAEEQNQKEAQKAFAAMSVAYDRYLKAGNLYQNYDSVTSTEGLYASISKDDLRFLPPSKDPPKIKDNVLMLAGPDKGKTGYLIGMENAVRADLGGQAKAIVKLETSSTLG----VREIKVVPLDYVAKTMEQTG 1084
A PA AA A E +GD+LRR + LDELQ DIFN+DW+ VATYP FR+ VPVFT+YTDA F G+ D SRVALRYEVGR FGAVERLKRAAE+++ +EAQ AFA +SVAYDRYLKAG LY YD VTSTE +A + LRF PP+ DPPKIKD VL+ AGPDKGKTG LIG+E + + + IVKL+ +T+G +REIKVVP VAK ++ G
Sbjct: 69 ALPAAAAPAPAKEAALKGYGDRLRRIARTLDELQRDIFNEDWEFVATYPATFRAFVPVFTRYTDARFEGEGEADRQSRVALRYEVGRLFGAVERLKRAAEKKDPREAQAAFAQISVAYDRYLKAGYLYDAYDPVTSTEKFFADVPDSALRFAPPAADPPKIKDLVLLTAGPDKGKTGTLIGLEETLGSKGEKKKSGIVKLD--NTIGRVSKIREIKVVPYAIVAKRLDTEG 297
BLAST of mRNA_H-paniculata_contig4145.10656.1 vs. uniprot
Match: A0A7S3Y3T3_HETAK (Glutamyl-tRNA(Gln) amidotransferase subunit B, mitochondrial n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y3T3_HETAK) HSP 1 Score: 242 bits (617), Expect = 1.880e-64 Identity = 129/213 (60.56%), Postives = 156/213 (73.24%), Query Frame = 2
Query: 458 FGDKLRRASTMLDELQDDIFNDDWDLVATYPNAFRSLVPVFTKYTDAAFPGDNPVDTTSRVALRYEVGRFFGAVERLKRAAEEQNQKEAQKAFAAMSVAYDRYLKAGNLYQNYDSVTSTEGLYASISKDDLRFLPPSKDPPKIKDNVLMLAGPDKGKTGYLIGMENAVRADLGGQAKAIVKLETSSTLG----VREIKVVPLDYVAKTMEQTG 1084
+GD+LRR + LDELQ DIFN+DW+ VATYP FR+ VPVFT+YTDA F G+ D SRVALRYEVGR FGAVERLKRAAE+++ +EAQ AFA +SVAYDRYLKAG LY YD VTSTE +A + LRF PP+ DPPKIKD VL+ AGPDKGKTG LIG+E + + + IVKL+ +T+G +REIKVVP VAK ++ G
Sbjct: 596 YGDRLRRIARTLDELQRDIFNEDWEFVATYPATFRAFVPVFTRYTDARFEGEGEADRQSRVALRYEVGRLFGAVERLKRAAEKKDPREAQAAFAQISVAYDRYLKAGYLYDAYDPVTSTEKFFADVPDSALRFAPPAADPPKIKDLVLLTAGPDKGKTGTLIGLEETLGSKGEKKKSGIVKLD--NTIGRVSKIREIKVVPYAIVAKRLDTEG 806
BLAST of mRNA_H-paniculata_contig4145.10656.1 vs. uniprot
Match: A0A0G4GSY0_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4GSY0_VITBC) HSP 1 Score: 228 bits (581), Expect = 7.160e-64 Identity = 116/225 (51.56%), Postives = 166/225 (73.78%), Query Frame = 2
Query: 467 KLRRASTMLDELQDDIFNDDWDLVATYPNAFRSLVPVFTKYTDAAFPGDNPVDTTSRVALRYEVGRFFGAVERLKRAAEEQNQKEAQKAFAAMSVAYDRYLKAGNLYQNYDSVTSTEGLYASISKDDLRFLPPSKDPPKIKDNVLMLAGPDKGKTGYLIGMENAVRADLGGQAKAIVKLETSSTLGVREIKVVPLDYVAKTMEQTGLPKSPTKTL*MKIHLLPTG 1141
++R+ +T+LDELQ DI+++DWD++A+YP R+ VP+FTKYTD+AFPG +PVD +R ALRYEVGR FG+VERLKRA ++++ +E ++AFAAMSV++DRYLKAG+LY+ YD + STE + + L ++PP +DPPKI+D VL+L GPDKGKTG L+G+E A + + K +VKL+T +RE+KVVP ++AK + + P ++L MK LLP G
Sbjct: 111 RIRQIATVLDELQADIYDEDWDILASYPQQLRAYVPIFTKYTDSAFPGKDPVDENTRFALRYEVGRLFGSVERLKRAVDKKDVRETEEAFAAMSVSFDRYLKAGDLYEVYDPIISTEKFFEGVEDSQLVYVPPLRDPPKIRDQVLLLRGPDKGKTGILLGVEGDEVAKV--KRKGVVKLDTKVG-SIRELKVVPYAFIAKRKGE----QEPDESLAMKRGLLPGG 328
BLAST of mRNA_H-paniculata_contig4145.10656.1 vs. uniprot
Match: A0A7R9UEJ4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UEJ4_9STRA) HSP 1 Score: 206 bits (525), Expect = 9.400e-58 Identity = 98/168 (58.33%), Postives = 129/168 (76.79%), Query Frame = 2
Query: 455 RFGDKLRRASTMLDELQDDIFNDDWDLVATYPNAFRSLVPVFTKYTDAAFPGDNPVDTTSRVALRYEVGRFFGAVERLKRAAEEQNQKEAQKAFAAMSVAYDRYLKAGNLYQNYDSVTSTEGLYASISKDDLRFLPPSKDPPKIKDNVLMLAGPDKGKTGYLIGMENA 958
R G+K+RR + +LD+LQ DIF +DW ++TYP RS VP+FTKYTD AFP ++ +DT +R ALRYEVGRFFGAVERLKRA + ++ EA+ +FA +S+++DRYLKAGNLY+ YD + STE Y I DL F+PPS + PK +D VL++AGPDKGKTG LIG+E +
Sbjct: 39 RAGEKIRRIARILDDLQRDIFEEDWTFISTYPVELRSFVPIFTKYTDTAFPSESAIDTQTRFALRYEVGRFFGAVERLKRAVDSRDIGEAEASFAQISISFDRYLKAGNLYEQYDPIVSTEKFYEGIPDKDLVFVPPSAETPKTRDPVLLIAGPDKGKTGLLIGIEQS 206
BLAST of mRNA_H-paniculata_contig4145.10656.1 vs. uniprot
Match: A0A7S4RLA6_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RLA6_9STRA) HSP 1 Score: 184 bits (467), Expect = 2.330e-48 Identity = 98/202 (48.51%), Postives = 133/202 (65.84%), Query Frame = 2
Query: 467 KLRRASTMLDELQDDIFNDDWDLVATYPNAFRSLVPVFTKYTDAAFPGDNPVDTTSRVALRYEVGRFFGAVERLKRAAEEQNQKEAQKAFAAMSVAYDRYLKAGNLYQNYDSVTSTEGLYASISKDDLRFLPPSKDPPKIKDNVLMLAGPDKGKTGYLIGMENAVRADLGGQAKAIVKLETSSTLGVREIKVVPLDYVAKTM 1072
K+R ++DELQ D+ + WDLV YP FRS VPVFT YTD+AFP D P D RVALRYEVGRFF ++ERL++A ++ EA A+A MS+ +DRYL+ G LY YDS+ STE L+ +I + L F P KDPP+++D V++ GPDKGK G +IG+ G+ +VKL+ G+REI+V+PL +V K +
Sbjct: 109 KIRGVVGIMDELQRDLMQERWDLVEKYPGQFRSYVPVFTTYTDSAFPSDEPTDQGLRVALRYEVGRFFASLERLRQATTRRSLNEAYTAYADMSLHFDRYLRVGGLYTYYDSLISTEPLFTNIPDNALIFSDPKKDPPEVRDLVVVTKGPDKGKIGIVIGIYP------DGKGNCVVKLDRYK--GLREIRVLPLLWVGKRL 302
BLAST of mRNA_H-paniculata_contig4145.10656.1 vs. uniprot
Match: A0A7S2IJZ6_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2IJZ6_9STRA) HSP 1 Score: 184 bits (467), Expect = 2.400e-48 Identity = 98/202 (48.51%), Postives = 131/202 (64.85%), Query Frame = 2
Query: 467 KLRRASTMLDELQDDIFNDDWDLVATYPNAFRSLVPVFTKYTDAAFPGDNPVDTTSRVALRYEVGRFFGAVERLKRAAEEQNQKEAQKAFAAMSVAYDRYLKAGNLYQNYDSVTSTEGLYASISKDDLRFLPPSKDPPKIKDNVLMLAGPDKGKTGYLIGMENAVRADLGGQAKAIVKLETSSTLGVREIKVVPLDYVAKTM 1072
K+R + ++DELQ D+ + WDLV YP RS VPVFT YTD+AFP D P D RVALRYEVGRFF ++ERL++A ++ EA AFA MS+ +DRYL+ G LY YDS +TE L+ +IS D L F P KDPP ++D +++ GPDKGKTG +IG+ G+ +VKL+ + REI+VVPL + K +
Sbjct: 110 KIRGVARVMDELQRDLMQERWDLVEKYPPQIRSYVPVFTTYTDSAFPSDEPTDQGLRVALRYEVGRFFASLERLRQATSRRSLDEAYTAFADMSLHFDRYLRVGGLYTYYDSTITTEPLFKNISDDALVFSDPKKDPPAVRDLIVLTKGPDKGKTGIVIGIYP------DGKGTCVVKLDRYKDM--REIRVVPLLWAGKRL 303
BLAST of mRNA_H-paniculata_contig4145.10656.1 vs. uniprot
Match: B7FPD1_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FPD1_PHATC) HSP 1 Score: 183 bits (464), Expect = 6.690e-48 Identity = 97/202 (48.02%), Postives = 132/202 (65.35%), Query Frame = 2
Query: 467 KLRRASTMLDELQDDIFNDDWDLVATYPNAFRSLVPVFTKYTDAAFPGDNPVDTTSRVALRYEVGRFFGAVERLKRAAEEQNQKEAQKAFAAMSVAYDRYLKAGNLYQNYDSVTSTEGLYASISKDDLRFLPPSKDPPKIKDNVLMLAGPDKGKTGYLIGMENAVRADLGGQAKAIVKLETSSTLGVREIKVVPLDYVAKTM 1072
K+R +++DELQ D+ + WDLV +YP RS VPVFT YTD+AFP D P D RVALRYEVGRFF +VER K+AA Q EA A++ M++ +DRYL+ G LY YD STE + I+ D L + P DPP ++D V+++ GP+KGKTG +IGM + G K+++KL+ G+REI+VV D+VAK +
Sbjct: 113 KIRNIGSVMDELQRDLMQERWDLVESYPAQLRSFVPVFTTYTDSAFPSDAPTDKGLRVALRYEVGRFFASVERFKQAASRQALDEAYLAYSEMALHFDRYLRVGGLYTYYDDSISTEPYFQGIADDALVYSDPKTDPPFVRDLVILVRGPEKGKTGIIIGMYS------DGTNKSVIKLDRYK--GMREIRVVANDWVAKRL 306
BLAST of mRNA_H-paniculata_contig4145.10656.1 vs. uniprot
Match: A0A0G4FIK4_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4FIK4_9ALVE) HSP 1 Score: 182 bits (461), Expect = 9.400e-48 Identity = 93/205 (45.37%), Postives = 140/205 (68.29%), Query Frame = 2
Query: 467 KLRRASTMLDELQDDIFNDDWDLVATYPNAFRSLVPVFTKYTDAAFPGDNPVDTTSRVALRYEVGRFFGAVERLKRAAEEQNQKEAQKAFAAMSVAYDRYLKAGNLYQNYDSVTSTEGLYASISKDDLRFLPPSKDPPKIKDNVLMLAGPDKGKTGYLIGMENAVRA--DLGG---QAKAIVKLETSSTLGVREIKVVPLDYVAK 1066
++R +T L++L+ DI +++W+LV YP F++ +P+FTKYTD AFPGD+ VD +R ALRY VG F+GAV +L+R E +++ + A+ +++A+DRYLKAG+LY YD V STE ++ IS LR+ PP K+PP D VL++ GPDKGKTG L+ +E V+ D+ G + +AIV+L+ +REI+ +P Y+AK
Sbjct: 92 RIRAIATTLEQLEKDIMDEEWELVDEYPEQFKTFLPLFTKYTDQAFPGDDEVDKNTRFALRYAVGSFYGAVAQLRRVVETRSKMDILAAYGQIALAFDRYLKAGDLYGAYDPVVSTEMFFSQISNSQLRYQPPEKNPPFPTDPVLLIKGPDKGKTGMLLSVEPFVKGLDDIPGNEERRRAIVRLDDKIGT-IREIRELPFTYIAK 295
BLAST of mRNA_H-paniculata_contig4145.10656.1 vs. uniprot
Match: A0A7S2R2S4_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R2S4_9STRA) HSP 1 Score: 179 bits (453), Expect = 4.080e-47 Identity = 95/202 (47.03%), Postives = 129/202 (63.86%), Query Frame = 2
Query: 467 KLRRASTMLDELQDDIFNDDWDLVATYPNAFRSLVPVFTKYTDAAFPGDNPVDTTSRVALRYEVGRFFGAVERLKRAAEEQNQKEAQKAFAAMSVAYDRYLKAGNLYQNYDSVTSTEGLYASISKDDLRFLPPSKDPPKIKDNVLMLAGPDKGKTGYLIGMENAVRADLGGQAKAIVKLETSSTLGVREIKVVPLDYVAKTM 1072
K+R+ ++DELQ D+ + WDLV YP RSLVP+FT YTDAAFP + P D RVALRYEVGRFFG++ERLK+A + EA A++ MS+ YDRYL G LY YD+ E LYA+I + L + P + PP+++D V+++ GPD GK G LIG+ + G +VKL+ G+R+IKVV +VAK +
Sbjct: 55 KIRKVGGIMDELQRDLMQERWDLVEKYPPQLRSLVPIFTTYTDAAFPSEAPSDAGLRVALRYEVGRFFGSLERLKQATNRRALNEAYLAYSDMSLHYDRYLHVGGLYSYYDATIDNEPLYANIPRSALTYADPVRYPPEVRDLVILVKGPDMGKIGILIGLYD------DGSGNCVVKLD--QVKGMRDIKVVSKRWVAKRL 248 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4145.10656.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig4145.10656.1 >prot_H-paniculata_contig4145.10656.1 ID=prot_H-paniculata_contig4145.10656.1|Name=mRNA_H-paniculata_contig4145.10656.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=335bp MRFVEAVALCVTGCTVVTEAFQTSFIVTSSSSLQRTAATHRSRTSLPRPVback to top mRNA from alignment at H-paniculata_contig4145:82..10469- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig4145.10656.1 ID=mRNA_H-paniculata_contig4145.10656.1|Name=mRNA_H-paniculata_contig4145.10656.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=10388bp|location=Sequence derived from alignment at H-paniculata_contig4145:82..10469- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig4145:82..10469- >mRNA_H-paniculata_contig4145.10656.1 ID=mRNA_H-paniculata_contig4145.10656.1|Name=mRNA_H-paniculata_contig4145.10656.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2010bp|location=Sequence derived from alignment at H-paniculata_contig4145:82..10469- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |