mRNA_H-paniculata_contig41447.10654.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig41447.10654.1 vs. uniprot
Match: A0A2R4QPT8_9PHAE (Photosystem I reaction center subunit II n=4 Tax=Phaeophyceae TaxID=2870 RepID=A0A2R4QPT8_9PHAE) HSP 1 Score: 229 bits (583), Expect = 9.030e-76 Identity = 109/114 (95.61%), Postives = 110/114 (96.49%), Query Frame = 1
Query: 1 WLRSAEFEEKYVITWNSTKEQFFEMPTAGAALMLLGQNLLYLARKEQCLALGTQLRRLKIKDYKIYRIFPGGEIQFLHPKDGVFPETSNIGRTPVGKRDFSIGKNPNPASIKWK 342
WLRSAEFEEKYVITWNS KEQ FEMPTAG ALMLLGQNLLYLARKEQCLALGTQLR+LKIKDYKIYRIFPGGEIQFLHPKDGVFPETSN GRTPVGKRDFSIGKNPNPASIKWK
Sbjct: 19 WLRSAEFEEKYVITWNSEKEQLFEMPTAGTALMLLGQNLLYLARKEQCLALGTQLRKLKIKDYKIYRIFPGGEIQFLHPKDGVFPETSNEGRTPVGKRDFSIGKNPNPASIKWK 132
BLAST of mRNA_H-paniculata_contig41447.10654.1 vs. uniprot
Match: A0A0S0GAH9_COSCS (Photosystem I reaction center subunit II n=44 Tax=Phaeophyceae TaxID=2870 RepID=A0A0S0GAH9_COSCS) HSP 1 Score: 229 bits (583), Expect = 9.030e-76 Identity = 109/114 (95.61%), Postives = 110/114 (96.49%), Query Frame = 1
Query: 1 WLRSAEFEEKYVITWNSTKEQFFEMPTAGAALMLLGQNLLYLARKEQCLALGTQLRRLKIKDYKIYRIFPGGEIQFLHPKDGVFPETSNIGRTPVGKRDFSIGKNPNPASIKWK 342
WLRSAEFEEKYVITWNST EQ FEMPTAG ALMLLGQNLLYLARKEQCLALGTQLR+LKIKDYKIYRIFPGGEIQFLHPKDGVFPETSN GRTPVGKRDFSIGKNPNPASIKWK
Sbjct: 19 WLRSAEFEEKYVITWNSTTEQLFEMPTAGTALMLLGQNLLYLARKEQCLALGTQLRKLKIKDYKIYRIFPGGEIQFLHPKDGVFPETSNEGRTPVGKRDFSIGKNPNPASIKWK 132
BLAST of mRNA_H-paniculata_contig41447.10654.1 vs. uniprot
Match: A0A8F0FAL2_9PHAE (Photosystem I reaction center subunit II n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0FAL2_9PHAE) HSP 1 Score: 221 bits (563), Expect = 1.010e-72 Identity = 104/114 (91.23%), Postives = 108/114 (94.74%), Query Frame = 1
Query: 1 WLRSAEFEEKYVITWNSTKEQFFEMPTAGAALMLLGQNLLYLARKEQCLALGTQLRRLKIKDYKIYRIFPGGEIQFLHPKDGVFPETSNIGRTPVGKRDFSIGKNPNPASIKWK 342
WLRSAEFEEKYVITWN+ EQ FEMPTAG ALML GQNLLYLARKEQCLALGTQLR+LKIKDYKIYRIFPGGEIQFLHPKDGVFPETSN GRTPVGK+DFSIGKNPNPASIKW+
Sbjct: 19 WLRSAEFEEKYVITWNAPTEQLFEMPTAGTALMLKGQNLLYLARKEQCLALGTQLRKLKIKDYKIYRIFPGGEIQFLHPKDGVFPETSNAGRTPVGKKDFSIGKNPNPASIKWQ 132
BLAST of mRNA_H-paniculata_contig41447.10654.1 vs. uniprot
Match: A0A2I4Q2A8_9PHAE (Photosystem I reaction center subunit II n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A2I4Q2A8_9PHAE) HSP 1 Score: 218 bits (555), Expect = 1.740e-71 Identity = 103/113 (91.15%), Postives = 106/113 (93.81%), Query Frame = 1
Query: 1 WLRSAEFEEKYVITWNSTKEQFFEMPTAGAALMLLGQNLLYLARKEQCLALGTQLRRLKIKDYKIYRIFPGGEIQFLHPKDGVFPETSNIGRTPVGKRDFSIGKNPNPASIKW 339
WLRSAE EEKYVITW S KE+FFEMPTAGAALML GQNLLY+ARKEQCLALGTQLR LKIKDYKIYRIFPGGEIQFLHPKDGVFPETSN GR PVGKRDFSIGKNPNPAS+KW
Sbjct: 19 WLRSAECEEKYVITWTSEKEKFFEMPTAGAALMLAGQNLLYMARKEQCLALGTQLRTLKIKDYKIYRIFPGGEIQFLHPKDGVFPETSNAGRLPVGKRDFSIGKNPNPASVKW 131
BLAST of mRNA_H-paniculata_contig41447.10654.1 vs. uniprot
Match: A0A8F0F7G4_9PHAE (Photosystem I reaction center subunit II n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0F7G4_9PHAE) HSP 1 Score: 217 bits (553), Expect = 3.870e-71 Identity = 103/114 (90.35%), Postives = 107/114 (93.86%), Query Frame = 1
Query: 1 WLRSAEFEEKYVITWNSTKEQFFEMPTAGAALMLLGQNLLYLARKEQCLALGTQLRRLKIKDYKIYRIFPGGEIQFLHPKDGVFPETSNIGRTPVGKRDFSIGKNPNPASIKWK 342
WLRSAEFEEKYVITWNSTKEQFFEMPTAGAALMLLGQNLLYLARKEQCLALGTQLR LKIKDYKIYRIFP GEIQFLHPKDGVFPE SNIGRTPVGKRDF+IG P+P +KW+
Sbjct: 19 WLRSAEFEEKYVITWNSTKEQFFEMPTAGAALMLLGQNLLYLARKEQCLALGTQLRTLKIKDYKIYRIFPSGEIQFLHPKDGVFPEISNIGRTPVGKRDFNIGLIPSPGELKWE 132
BLAST of mRNA_H-paniculata_contig41447.10654.1 vs. uniprot
Match: A0A8E5XRI2_9PHAE (Photosystem I reaction center subunit II n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E5XRI2_9PHAE) HSP 1 Score: 213 bits (541), Expect = 2.370e-69 Identity = 102/115 (88.70%), Postives = 107/115 (93.04%), Query Frame = 1
Query: 1 WLRSAEFEEKYVITWNSTKEQFFEMPTAGAALMLLGQNLLYLARKEQCLALGTQLRRLK-IKDYKIYRIFPGGEIQFLHPKDGVFPETSNIGRTPVGKRDFSIGKNPNPASIKWK 342
WLRSAE EEKY ITWNS KEQ FEMPTAGAALML G+NLLYLARKEQCLALGTQLR++K IKDYKIYRIFPGGE+QFLHPKDGVFPETSN GR PVGKRDFSIGKNPNPASIKW+
Sbjct: 19 WLRSAEVEEKYAITWNSPKEQIFEMPTAGAALMLQGENLLYLARKEQCLALGTQLRKVKKIKDYKIYRIFPGGEVQFLHPKDGVFPETSNEGRMPVGKRDFSIGKNPNPASIKWQ 133
BLAST of mRNA_H-paniculata_contig41447.10654.1 vs. uniprot
Match: A0A7S6U9W3_9STRA (Photosystem I reaction center subunit II n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7S6U9W3_9STRA) HSP 1 Score: 195 bits (496), Expect = 2.160e-62 Identity = 88/113 (77.88%), Postives = 102/113 (90.27%), Query Frame = 1
Query: 1 WLRSAEFEEKYVITWNSTKEQFFEMPTAGAALMLLGQNLLYLARKEQCLALGTQLRRLKIKDYKIYRIFPGGEIQFLHPKDGVFPETSNIGRTPVGKRDFSIGKNPNPASIKW 339
WLR+AE EEKY ITWN+ KEQ FEMPT GAA+ML+G+NLLYLARKEQCLALGTQLR L+IK+Y+IYRIFPGGE+Q+LHPKDGVFPE N GR P+G +DFSIGKNPNPA+IK+
Sbjct: 19 WLRAAEVEEKYAITWNAPKEQVFEMPTGGAAVMLIGENLLYLARKEQCLALGTQLRSLRIKEYRIYRIFPGGEVQYLHPKDGVFPEKVNAGRIPIGTKDFSIGKNPNPATIKF 131
BLAST of mRNA_H-paniculata_contig41447.10654.1 vs. uniprot
Match: B2XT55_HETAK (Photosystem I reaction center subunit II n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=B2XT55_HETAK) HSP 1 Score: 189 bits (481), Expect = 4.030e-60 Identity = 88/113 (77.88%), Postives = 98/113 (86.73%), Query Frame = 1
Query: 1 WLRSAEFEEKYVITWNSTKEQFFEMPTAGAALMLLGQNLLYLARKEQCLALGTQLRRLKIKDYKIYRIFPGGEIQFLHPKDGVFPETSNIGRTPVGKRDFSIGKNPNPASIKW 339
WLR+AE EEKYVITW+S+KEQ FEMPT GAA+ML G+NLLYLARKEQCLALGTQLR KI DYKIYR+FP GEIQ+LHPKDGVFPE N GR VG R+FSIGKNPNP S+K+
Sbjct: 19 WLRAAEIEEKYVITWSSSKEQLFEMPTGGAAIMLQGENLLYLARKEQCLALGTQLRSFKINDYKIYRLFPNGEIQYLHPKDGVFPEKVNPGRLAVGSRNFSIGKNPNPVSVKF 131
BLAST of mRNA_H-paniculata_contig41447.10654.1 vs. uniprot
Match: UPI001EDDB867 (photosystem I reaction center subunit II (ferredoxin-binding) n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=UPI001EDDB867) HSP 1 Score: 189 bits (480), Expect = 5.720e-60 Identity = 89/113 (78.76%), Postives = 96/113 (84.96%), Query Frame = 1
Query: 1 WLRSAEFEEKYVITWNSTKEQFFEMPTAGAALMLLGQNLLYLARKEQCLALGTQLRRLKIKDYKIYRIFPGGEIQFLHPKDGVFPETSNIGRTPVGKRDFSIGKNPNPASIKW 339
WLRSAE EEKY ITWNSTKEQ FEMPT GAA+M G+NLLYLARKEQCLALGTQLR KI +YKIYRIFP GE+QFLHPKDGVFPE +N GR R+FSIGKNPNPASIK+
Sbjct: 19 WLRSAEVEEKYAITWNSTKEQIFEMPTGGAAIMKTGENLLYLARKEQCLALGTQLRTFKINNYKIYRIFPSGEVQFLHPKDGVFPEKTNPGRIATNNRNFSIGKNPNPASIKF 131
BLAST of mRNA_H-paniculata_contig41447.10654.1 vs. uniprot
Match: B7T226_VAULI (Photosystem I reaction center subunit II n=1 Tax=Vaucheria litorea TaxID=109269 RepID=B7T226_VAULI) HSP 1 Score: 187 bits (476), Expect = 2.330e-59 Identity = 87/113 (76.99%), Postives = 97/113 (85.84%), Query Frame = 1
Query: 1 WLRSAEFEEKYVITWNSTKEQFFEMPTAGAALMLLGQNLLYLARKEQCLALGTQLRRLKIKDYKIYRIFPGGEIQFLHPKDGVFPETSNIGRTPVGKRDFSIGKNPNPASIKW 339
WLR+AE EEKY ITW S+KEQ FEMPT GAA+ML QNLLYLARKEQCLALGTQL++ KI DYKIYRIFP GE+QFLHPKDGVFPE N+GR VG R+FSIGKNPNP S+K+
Sbjct: 19 WLRAAEVEEKYAITWTSSKEQTFEMPTGGAAVMLNDQNLLYLARKEQCLALGTQLKKFKINDYKIYRIFPNGEVQFLHPKDGVFPEKVNVGRLAVGSRNFSIGKNPNPISVKF 131 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig41447.10654.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig41447.10654.1 >prot_H-paniculata_contig41447.10654.1 ID=prot_H-paniculata_contig41447.10654.1|Name=mRNA_H-paniculata_contig41447.10654.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=115bp WLRSAEFEEKYVITWNSTKEQFFEMPTAGAALMLLGQNLLYLARKEQCLAback to top mRNA from alignment at H-paniculata_contig41447:1328..1672+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig41447.10654.1 ID=mRNA_H-paniculata_contig41447.10654.1|Name=mRNA_H-paniculata_contig41447.10654.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=345bp|location=Sequence derived from alignment at H-paniculata_contig41447:1328..1672+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig41447:1328..1672+ >mRNA_H-paniculata_contig41447.10654.1 ID=mRNA_H-paniculata_contig41447.10654.1|Name=mRNA_H-paniculata_contig41447.10654.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=690bp|location=Sequence derived from alignment at H-paniculata_contig41447:1328..1672+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |