mRNA_H-paniculata_contig41447.10654.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig41447.10654.1
Unique NamemRNA_H-paniculata_contig41447.10654.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig41447.10654.1 vs. uniprot
Match: A0A2R4QPT8_9PHAE (Photosystem I reaction center subunit II n=4 Tax=Phaeophyceae TaxID=2870 RepID=A0A2R4QPT8_9PHAE)

HSP 1 Score: 229 bits (583), Expect = 9.030e-76
Identity = 109/114 (95.61%), Postives = 110/114 (96.49%), Query Frame = 1
Query:    1 WLRSAEFEEKYVITWNSTKEQFFEMPTAGAALMLLGQNLLYLARKEQCLALGTQLRRLKIKDYKIYRIFPGGEIQFLHPKDGVFPETSNIGRTPVGKRDFSIGKNPNPASIKWK 342
            WLRSAEFEEKYVITWNS KEQ FEMPTAG ALMLLGQNLLYLARKEQCLALGTQLR+LKIKDYKIYRIFPGGEIQFLHPKDGVFPETSN GRTPVGKRDFSIGKNPNPASIKWK
Sbjct:   19 WLRSAEFEEKYVITWNSEKEQLFEMPTAGTALMLLGQNLLYLARKEQCLALGTQLRKLKIKDYKIYRIFPGGEIQFLHPKDGVFPETSNEGRTPVGKRDFSIGKNPNPASIKWK 132          
BLAST of mRNA_H-paniculata_contig41447.10654.1 vs. uniprot
Match: A0A0S0GAH9_COSCS (Photosystem I reaction center subunit II n=44 Tax=Phaeophyceae TaxID=2870 RepID=A0A0S0GAH9_COSCS)

HSP 1 Score: 229 bits (583), Expect = 9.030e-76
Identity = 109/114 (95.61%), Postives = 110/114 (96.49%), Query Frame = 1
Query:    1 WLRSAEFEEKYVITWNSTKEQFFEMPTAGAALMLLGQNLLYLARKEQCLALGTQLRRLKIKDYKIYRIFPGGEIQFLHPKDGVFPETSNIGRTPVGKRDFSIGKNPNPASIKWK 342
            WLRSAEFEEKYVITWNST EQ FEMPTAG ALMLLGQNLLYLARKEQCLALGTQLR+LKIKDYKIYRIFPGGEIQFLHPKDGVFPETSN GRTPVGKRDFSIGKNPNPASIKWK
Sbjct:   19 WLRSAEFEEKYVITWNSTTEQLFEMPTAGTALMLLGQNLLYLARKEQCLALGTQLRKLKIKDYKIYRIFPGGEIQFLHPKDGVFPETSNEGRTPVGKRDFSIGKNPNPASIKWK 132          
BLAST of mRNA_H-paniculata_contig41447.10654.1 vs. uniprot
Match: A0A8F0FAL2_9PHAE (Photosystem I reaction center subunit II n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0FAL2_9PHAE)

HSP 1 Score: 221 bits (563), Expect = 1.010e-72
Identity = 104/114 (91.23%), Postives = 108/114 (94.74%), Query Frame = 1
Query:    1 WLRSAEFEEKYVITWNSTKEQFFEMPTAGAALMLLGQNLLYLARKEQCLALGTQLRRLKIKDYKIYRIFPGGEIQFLHPKDGVFPETSNIGRTPVGKRDFSIGKNPNPASIKWK 342
            WLRSAEFEEKYVITWN+  EQ FEMPTAG ALML GQNLLYLARKEQCLALGTQLR+LKIKDYKIYRIFPGGEIQFLHPKDGVFPETSN GRTPVGK+DFSIGKNPNPASIKW+
Sbjct:   19 WLRSAEFEEKYVITWNAPTEQLFEMPTAGTALMLKGQNLLYLARKEQCLALGTQLRKLKIKDYKIYRIFPGGEIQFLHPKDGVFPETSNAGRTPVGKKDFSIGKNPNPASIKWQ 132          
BLAST of mRNA_H-paniculata_contig41447.10654.1 vs. uniprot
Match: A0A2I4Q2A8_9PHAE (Photosystem I reaction center subunit II n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A2I4Q2A8_9PHAE)

HSP 1 Score: 218 bits (555), Expect = 1.740e-71
Identity = 103/113 (91.15%), Postives = 106/113 (93.81%), Query Frame = 1
Query:    1 WLRSAEFEEKYVITWNSTKEQFFEMPTAGAALMLLGQNLLYLARKEQCLALGTQLRRLKIKDYKIYRIFPGGEIQFLHPKDGVFPETSNIGRTPVGKRDFSIGKNPNPASIKW 339
            WLRSAE EEKYVITW S KE+FFEMPTAGAALML GQNLLY+ARKEQCLALGTQLR LKIKDYKIYRIFPGGEIQFLHPKDGVFPETSN GR PVGKRDFSIGKNPNPAS+KW
Sbjct:   19 WLRSAECEEKYVITWTSEKEKFFEMPTAGAALMLAGQNLLYMARKEQCLALGTQLRTLKIKDYKIYRIFPGGEIQFLHPKDGVFPETSNAGRLPVGKRDFSIGKNPNPASVKW 131          
BLAST of mRNA_H-paniculata_contig41447.10654.1 vs. uniprot
Match: A0A8F0F7G4_9PHAE (Photosystem I reaction center subunit II n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0F7G4_9PHAE)

HSP 1 Score: 217 bits (553), Expect = 3.870e-71
Identity = 103/114 (90.35%), Postives = 107/114 (93.86%), Query Frame = 1
Query:    1 WLRSAEFEEKYVITWNSTKEQFFEMPTAGAALMLLGQNLLYLARKEQCLALGTQLRRLKIKDYKIYRIFPGGEIQFLHPKDGVFPETSNIGRTPVGKRDFSIGKNPNPASIKWK 342
            WLRSAEFEEKYVITWNSTKEQFFEMPTAGAALMLLGQNLLYLARKEQCLALGTQLR LKIKDYKIYRIFP GEIQFLHPKDGVFPE SNIGRTPVGKRDF+IG  P+P  +KW+
Sbjct:   19 WLRSAEFEEKYVITWNSTKEQFFEMPTAGAALMLLGQNLLYLARKEQCLALGTQLRTLKIKDYKIYRIFPSGEIQFLHPKDGVFPEISNIGRTPVGKRDFNIGLIPSPGELKWE 132          
BLAST of mRNA_H-paniculata_contig41447.10654.1 vs. uniprot
Match: A0A8E5XRI2_9PHAE (Photosystem I reaction center subunit II n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E5XRI2_9PHAE)

HSP 1 Score: 213 bits (541), Expect = 2.370e-69
Identity = 102/115 (88.70%), Postives = 107/115 (93.04%), Query Frame = 1
Query:    1 WLRSAEFEEKYVITWNSTKEQFFEMPTAGAALMLLGQNLLYLARKEQCLALGTQLRRLK-IKDYKIYRIFPGGEIQFLHPKDGVFPETSNIGRTPVGKRDFSIGKNPNPASIKWK 342
            WLRSAE EEKY ITWNS KEQ FEMPTAGAALML G+NLLYLARKEQCLALGTQLR++K IKDYKIYRIFPGGE+QFLHPKDGVFPETSN GR PVGKRDFSIGKNPNPASIKW+
Sbjct:   19 WLRSAEVEEKYAITWNSPKEQIFEMPTAGAALMLQGENLLYLARKEQCLALGTQLRKVKKIKDYKIYRIFPGGEVQFLHPKDGVFPETSNEGRMPVGKRDFSIGKNPNPASIKWQ 133          
BLAST of mRNA_H-paniculata_contig41447.10654.1 vs. uniprot
Match: A0A7S6U9W3_9STRA (Photosystem I reaction center subunit II n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7S6U9W3_9STRA)

HSP 1 Score: 195 bits (496), Expect = 2.160e-62
Identity = 88/113 (77.88%), Postives = 102/113 (90.27%), Query Frame = 1
Query:    1 WLRSAEFEEKYVITWNSTKEQFFEMPTAGAALMLLGQNLLYLARKEQCLALGTQLRRLKIKDYKIYRIFPGGEIQFLHPKDGVFPETSNIGRTPVGKRDFSIGKNPNPASIKW 339
            WLR+AE EEKY ITWN+ KEQ FEMPT GAA+ML+G+NLLYLARKEQCLALGTQLR L+IK+Y+IYRIFPGGE+Q+LHPKDGVFPE  N GR P+G +DFSIGKNPNPA+IK+
Sbjct:   19 WLRAAEVEEKYAITWNAPKEQVFEMPTGGAAVMLIGENLLYLARKEQCLALGTQLRSLRIKEYRIYRIFPGGEVQYLHPKDGVFPEKVNAGRIPIGTKDFSIGKNPNPATIKF 131          
BLAST of mRNA_H-paniculata_contig41447.10654.1 vs. uniprot
Match: B2XT55_HETAK (Photosystem I reaction center subunit II n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=B2XT55_HETAK)

HSP 1 Score: 189 bits (481), Expect = 4.030e-60
Identity = 88/113 (77.88%), Postives = 98/113 (86.73%), Query Frame = 1
Query:    1 WLRSAEFEEKYVITWNSTKEQFFEMPTAGAALMLLGQNLLYLARKEQCLALGTQLRRLKIKDYKIYRIFPGGEIQFLHPKDGVFPETSNIGRTPVGKRDFSIGKNPNPASIKW 339
            WLR+AE EEKYVITW+S+KEQ FEMPT GAA+ML G+NLLYLARKEQCLALGTQLR  KI DYKIYR+FP GEIQ+LHPKDGVFPE  N GR  VG R+FSIGKNPNP S+K+
Sbjct:   19 WLRAAEIEEKYVITWSSSKEQLFEMPTGGAAIMLQGENLLYLARKEQCLALGTQLRSFKINDYKIYRLFPNGEIQYLHPKDGVFPEKVNPGRLAVGSRNFSIGKNPNPVSVKF 131          
BLAST of mRNA_H-paniculata_contig41447.10654.1 vs. uniprot
Match: UPI001EDDB867 (photosystem I reaction center subunit II (ferredoxin-binding) n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=UPI001EDDB867)

HSP 1 Score: 189 bits (480), Expect = 5.720e-60
Identity = 89/113 (78.76%), Postives = 96/113 (84.96%), Query Frame = 1
Query:    1 WLRSAEFEEKYVITWNSTKEQFFEMPTAGAALMLLGQNLLYLARKEQCLALGTQLRRLKIKDYKIYRIFPGGEIQFLHPKDGVFPETSNIGRTPVGKRDFSIGKNPNPASIKW 339
            WLRSAE EEKY ITWNSTKEQ FEMPT GAA+M  G+NLLYLARKEQCLALGTQLR  KI +YKIYRIFP GE+QFLHPKDGVFPE +N GR     R+FSIGKNPNPASIK+
Sbjct:   19 WLRSAEVEEKYAITWNSTKEQIFEMPTGGAAIMKTGENLLYLARKEQCLALGTQLRTFKINNYKIYRIFPSGEVQFLHPKDGVFPEKTNPGRIATNNRNFSIGKNPNPASIKF 131          
BLAST of mRNA_H-paniculata_contig41447.10654.1 vs. uniprot
Match: B7T226_VAULI (Photosystem I reaction center subunit II n=1 Tax=Vaucheria litorea TaxID=109269 RepID=B7T226_VAULI)

HSP 1 Score: 187 bits (476), Expect = 2.330e-59
Identity = 87/113 (76.99%), Postives = 97/113 (85.84%), Query Frame = 1
Query:    1 WLRSAEFEEKYVITWNSTKEQFFEMPTAGAALMLLGQNLLYLARKEQCLALGTQLRRLKIKDYKIYRIFPGGEIQFLHPKDGVFPETSNIGRTPVGKRDFSIGKNPNPASIKW 339
            WLR+AE EEKY ITW S+KEQ FEMPT GAA+ML  QNLLYLARKEQCLALGTQL++ KI DYKIYRIFP GE+QFLHPKDGVFPE  N+GR  VG R+FSIGKNPNP S+K+
Sbjct:   19 WLRAAEVEEKYAITWTSSKEQTFEMPTGGAAVMLNDQNLLYLARKEQCLALGTQLKKFKINDYKIYRIFPNGEVQFLHPKDGVFPEKVNVGRLAVGSRNFSIGKNPNPISVKF 131          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig41447.10654.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2R4QPT8_9PHAE9.030e-7695.61Photosystem I reaction center subunit II n=4 Tax=P... [more]
A0A0S0GAH9_COSCS9.030e-7695.61Photosystem I reaction center subunit II n=44 Tax=... [more]
A0A8F0FAL2_9PHAE1.010e-7291.23Photosystem I reaction center subunit II n=1 Tax=D... [more]
A0A2I4Q2A8_9PHAE1.740e-7191.15Photosystem I reaction center subunit II n=1 Tax=D... [more]
A0A8F0F7G4_9PHAE3.870e-7190.35Photosystem I reaction center subunit II n=1 Tax=P... [more]
A0A8E5XRI2_9PHAE2.370e-6988.70Photosystem I reaction center subunit II n=1 Tax=I... [more]
A0A7S6U9W3_9STRA2.160e-6277.88Photosystem I reaction center subunit II n=1 Tax=S... [more]
B2XT55_HETAK4.030e-6077.88Photosystem I reaction center subunit II n=2 Tax=H... [more]
UPI001EDDB8675.720e-6078.76photosystem I reaction center subunit II (ferredox... [more]
B7T226_VAULI2.330e-5976.99Photosystem I reaction center subunit II n=1 Tax=V... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig41447contigH-paniculata_contig41447:1328..1672 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score227.3
Seed ortholog evalue3.8e-57
Seed eggNOG ortholog2880.D1J785
Preferred namepsaD
KEGG koko:K02692
KEGG Pathwayko00195,ko01100,map00195,map01100
KEGG ModuleM00163
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009526,GO:0009532,GO:0009534,GO:0009535,GO:0009536,GO:0009570,GO:0009579,GO:0009941,GO:0010287,GO:0016020,GO:0019904,GO:0031967,GO:0031975,GO:0031976,GO:0031984,GO:0034357,GO:0042651,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0055035
EggNOG free text desc.photosynthesis
EggNOG OGs28I81@1,2QQIC@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko00194
Exons1
Model size345
Cds size345
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930263.254932-CDS-H-paniculata_contig41447:1327..16721622930263.254932-CDS-H-paniculata_contig41447:1327..1672Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig41447 1328..1672 +
1691481215.7797623-CDS-H-paniculata_contig41447:1327..16721691481215.7797623-CDS-H-paniculata_contig41447:1327..1672Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig41447 1328..1672 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig41447.10654.1prot_H-paniculata_contig41447.10654.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig41447 1328..1672 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig41447.10654.1

>prot_H-paniculata_contig41447.10654.1 ID=prot_H-paniculata_contig41447.10654.1|Name=mRNA_H-paniculata_contig41447.10654.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=115bp
WLRSAEFEEKYVITWNSTKEQFFEMPTAGAALMLLGQNLLYLARKEQCLA
LGTQLRRLKIKDYKIYRIFPGGEIQFLHPKDGVFPETSNIGRTPVGKRDF
SIGKNPNPASIKWK*
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mRNA from alignment at H-paniculata_contig41447:1328..1672+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig41447.10654.1 ID=mRNA_H-paniculata_contig41447.10654.1|Name=mRNA_H-paniculata_contig41447.10654.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=345bp|location=Sequence derived from alignment at H-paniculata_contig41447:1328..1672+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGGCTACGTTCAGCAGAATTTGAAGAAAAATATGTTATTACTTGGAATTC AACAAAAGAACAATTTTTTGAAATGCCAACAGCTGGAGCTGCTCTTATGC TCTTAGGACAAAATCTTTTATATTTAGCTCGTAAAGAGCAATGTCTGGCA TTAGGAACCCAATTGCGTCGTTTAAAAATAAAAGATTACAAAATTTATAG AATTTTTCCTGGTGGAGAAATACAATTTTTGCATCCAAAAGATGGTGTTT TTCCAGAAACATCAAATATTGGTAGAACACCTGTAGGTAAAAGAGATTTT TCTATTGGAAAAAATCCTAATCCAGCCTCTATCAAATGGAAGTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig41447:1328..1672+

>mRNA_H-paniculata_contig41447.10654.1 ID=mRNA_H-paniculata_contig41447.10654.1|Name=mRNA_H-paniculata_contig41447.10654.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=690bp|location=Sequence derived from alignment at H-paniculata_contig41447:1328..1672+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGGCTACGTTCAGCAGAATTTGAAGAAAAATATGTTATTACTTGGAATTC
AACAAAAGAACAATTTTTTGAAATGCCAACAGCTGGAGCTGCTCTTATGC
TCTTAGGACAAAATCTTTTATATTTAGCTCGTAAAGAGCAATGTCTGGCA
TTAGGAACCCAATTGCGTCGTTTAAAAATAAAAGATTACAAAATTTATAG
AATTTTTCCTGGTGGAGAAATACAATTTTTGCATCCAAAAGATGGTGTTT
TTCCAGAAACATCAAATATTGGTAGAACACCTGTAGGTAAAAGAGATTTT
TCTATTGGAAAAAATCCTAATCCAGCCTCTATCAAATGGAAGTAGTGGCT
ACGTTCAGCAGAATTTGAAGAAAAATATGTTATTACTTGGAATTCAACAA
AAGAACAATTTTTTGAAATGCCAACAGCTGGAGCTGCTCTTATGCTCTTA
GGACAAAATCTTTTATATTTAGCTCGTAAAGAGCAATGTCTGGCATTAGG
AACCCAATTGCGTCGTTTAAAAATAAAAGATTACAAAATTTATAGAATTT
TTCCTGGTGGAGAAATACAATTTTTGCATCCAAAAGATGGTGTTTTTCCA
GAAACATCAAATATTGGTAGAACACCTGTAGGTAAAAGAGATTTTTCTAT
TGGAAAAAATCCTAATCCAGCCTCTATCAAATGGAAGTAG
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