mRNA_H-paniculata_contig41424.10652.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig41424.10652.1
Unique NamemRNA_H-paniculata_contig41424.10652.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig41424.10652.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig41424contigH-paniculata_contig41424:34..806 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size773
Cds size576
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig41424.10652.1prot_H-paniculata_contig41424.10652.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig41424 192..767 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930263.0905976-UTR-H-paniculata_contig41424:33..1911622930263.0905976-UTR-H-paniculata_contig41424:33..191Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig41424 34..191 +
1691481215.7110572-UTR-H-paniculata_contig41424:33..1911691481215.7110572-UTR-H-paniculata_contig41424:33..191Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig41424 34..191 +
1622930263.119253-UTR-H-paniculata_contig41424:767..8061622930263.119253-UTR-H-paniculata_contig41424:767..806Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig41424 768..806 +
1691481215.7362015-UTR-H-paniculata_contig41424:767..8061691481215.7362015-UTR-H-paniculata_contig41424:767..806Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig41424 768..806 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930263.1062272-CDS-H-paniculata_contig41424:191..7671622930263.1062272-CDS-H-paniculata_contig41424:191..767Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig41424 192..767 +
1691481215.722653-CDS-H-paniculata_contig41424:191..7671691481215.722653-CDS-H-paniculata_contig41424:191..767Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig41424 192..767 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig41424.10652.1

>prot_H-paniculata_contig41424.10652.1 ID=prot_H-paniculata_contig41424.10652.1|Name=mRNA_H-paniculata_contig41424.10652.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=192bp
MSTVCVDTNDGSQHLPLSKGYVGIYTLSPTEVVKDEDVLFLSCPRDAKVR
LQGSIYSQGMQGLSILNDSALDVSGSGTSCCEVVLSEFNRCGQKSPNGVM
GHRYISASFPAATTVVFSPFAMQAAIPRLTTIPGCKSEPVRRTLVETPPL
RYHTKTNGIIWLRRICREALCRAMHRLSEWKMIRVRPGILQ*
back to top

mRNA from alignment at H-paniculata_contig41424:34..806+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig41424.10652.1 ID=mRNA_H-paniculata_contig41424.10652.1|Name=mRNA_H-paniculata_contig41424.10652.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=773bp|location=Sequence derived from alignment at H-paniculata_contig41424:34..806+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACACGCATTCCGCTCACGCAGTCTCCCGCGCGTCACCAACAAGAACTGCC
ACGGGTACCGGCAGGACCGCGGCTACTGTATCAGGCACGACCTTGGGGTT
AGGCTCGTGGAGTGTCGCGGAATGTGAAGAGCCTATATTTGGGAGCAGTG
TGCATACCATGAGCACTGTTTGCGTTGACACGAACGACGGCAGTCAACAC
TTGCCGCTATCGAAAGGTTACGTTGGTATATATACTCTCTCGCCGACAGA
GGTAGTGAAAGACGAAGACGTGCTGTTTTTGAGTTGCCCGCGGGATGCAA
AGGTTCGGTTGCAGGGGTCGATTTATAGCCAGGGAATGCAAGGCCTCAGT
ATCCTGAACGACAGCGCGTTGGATGTGTCAGGAAGCGGAACGAGTTGTTG
TGAAGTTGTGCTGTCGGAGTTCAATCGCTGTGGCCAAAAATCACCAAACG
GTGTAATGGGACACCGATACATATCCGCAAGTTTTCCAGCCGCTACAACT
GTGGTGTTCTCGCCGTTCGCCATGCAAGCAGCGATACCCCGACTAACAAC
GATTCCTGGGTGCAAAAGCGAACCGGTTCGCCGAACTTTGGTCGAAACAC
CCCCGCTGAGGTACCATACAAAAACAAACGGTATTATATGGTTGCGGCGG
ATTTGTAGGGAAGCCCTGTGCAGAGCAATGCACAGGTTGTCGGAATGGAA
GATGATACGTGTCCGTCCGGGAATCCTGCAGTGAGGAGTACGCGCGGCGG
GGAGGGCGACGCTTCGGAGGTGG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig41424:34..806+

>mRNA_H-paniculata_contig41424.10652.1 ID=mRNA_H-paniculata_contig41424.10652.1|Name=mRNA_H-paniculata_contig41424.10652.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1152bp|location=Sequence derived from alignment at H-paniculata_contig41424:34..806+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGCACTGTTTGCGTTGACACGAACGACGGCAGTCAACACTTGCCGCT
ATCGAAAGGTTACGTTGGTATATATACTCTCTCGCCGACAGAGGTAGTGA
AAGACGAAGACGTGCTGTTTTTGAGTTGCCCGCGGGATGCAAAGGTTCGG
TTGCAGGGGTCGATTTATAGCCAGGGAATGCAAGGCCTCAGTATCCTGAA
CGACAGCGCGTTGGATGTGTCAGGAAGCGGAACGAGTTGTTGTGAAGTTG
TGCTGTCGGAGTTCAATCGCTGTGGCCAAAAATCACCAAACGGTGTAATG
GGACACCGATACATATCCGCAAGTTTTCCAGCCGCTACAACTGTGGTGTT
CTCGCCGTTCGCCATGCAAGCAGCGATACCCCGACTAACAACGATTCCTG
GGTGCAAAAGCGAACCGGTTCGCCGAACTTTGGTCGAAACACCCCCGCTG
AGGTACCATACAAAAACAAACGGTATTATATGGTTGCGGCGGATTTGTAG
GGAAGCCCTGTGCAGAGCAATGCACAGGTTGTCGGAATGGAAGATGATAC
GTGTCCGTCCGGGAATCCTGCAGTGAATGAGCACTGTTTGCGTTGACACG
AACGACGGCAGTCAACACTTGCCGCTATCGAAAGGTTACGTTGGTATATA
TACTCTCTCGCCGACAGAGGTAGTGAAAGACGAAGACGTGCTGTTTTTGA
GTTGCCCGCGGGATGCAAAGGTTCGGTTGCAGGGGTCGATTTATAGCCAG
GGAATGCAAGGCCTCAGTATCCTGAACGACAGCGCGTTGGATGTGTCAGG
AAGCGGAACGAGTTGTTGTGAAGTTGTGCTGTCGGAGTTCAATCGCTGTG
GCCAAAAATCACCAAACGGTGTAATGGGACACCGATACATATCCGCAAGT
TTTCCAGCCGCTACAACTGTGGTGTTCTCGCCGTTCGCCATGCAAGCAGC
GATACCCCGACTAACAACGATTCCTGGGTGCAAAAGCGAACCGGTTCGCC
GAACTTTGGTCGAAACACCCCCGCTGAGGTACCATACAAAAACAAACGGT
ATTATATGGTTGCGGCGGATTTGTAGGGAAGCCCTGTGCAGAGCAATGCA
CAGGTTGTCGGAATGGAAGATGATACGTGTCCGTCCGGGAATCCTGCAGT
GA
back to top