mRNA_H-paniculata_contig41418.10650.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig41418.10650.1
Unique NamemRNA_H-paniculata_contig41418.10650.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig41418.10650.1 vs. uniprot
Match: A0A6H5JXI7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXI7_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 5.680e-11
Identity = 33/52 (63.46%), Postives = 38/52 (73.08%), Query Frame = 1 
Query:  427 TVTRGSVLYLAAAGAV---EGEESFVPHLWLLPRCRGLVHHGGSGTTGAALE 573
            T T  +V  +AAA  +    GE+SFVPH WLLPRCRG+VHHGGSGTTGA L 
Sbjct:   10 TETAATVAAVAAAPYLLDLAGEQSFVPHTWLLPRCRGVVHHGGSGTTGACLS 61
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BLAST of mRNA_H-paniculata_contig41418.10650.1 vs. uniprot
Match: A0A7K2XEM2_9ACTN (Glycosyltransferase n=1 Tax=Streptomyces sp. SID2131 TaxID=2690254 RepID=A0A7K2XEM2_9ACTN)

HSP 1 Score: 51.6 bits (122), Expect = 7.480e-5
Identity = 25/49 (51.02%), Postives = 28/49 (57.14%), Query Frame = 1 
Query:  427 TVTRGSVLYLAAAGAVEGEESFVPHLWLLPRCRGLVHHGGSGTTGAALE 573
            TV RGS       GA       VPH WLLPR   ++HHGG+GTT AAL 
Sbjct:   40 TVPRGSGTTPGRVGATAYVVDEVPHAWLLPRTAAIIHHGGAGTTTAALR 88
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig41418.10650.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JXI7_9PHAE5.680e-1163.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7K2XEM2_9ACTN7.480e-551.02Glycosyltransferase n=1 Tax=Streptomyces sp. SID21... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig41418contigH-paniculata_contig41418:649..1576 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size576
Cds size576
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig41418.10650.1prot_H-paniculata_contig41418.10650.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig41418 649..1576 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930262.9443207-CDS-H-paniculata_contig41418:648..9501622930262.9443207-CDS-H-paniculata_contig41418:648..950Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig41418 649..950 -
1691481215.6584063-CDS-H-paniculata_contig41418:648..9501691481215.6584063-CDS-H-paniculata_contig41418:648..950Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig41418 649..950 -
1622930262.9613328-CDS-H-paniculata_contig41418:1085..12031622930262.9613328-CDS-H-paniculata_contig41418:1085..1203Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig41418 1086..1203 -
1691481215.6758518-CDS-H-paniculata_contig41418:1085..12031691481215.6758518-CDS-H-paniculata_contig41418:1085..1203Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig41418 1086..1203 -
1622930262.9813874-CDS-H-paniculata_contig41418:1420..15761622930262.9813874-CDS-H-paniculata_contig41418:1420..1576Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig41418 1421..1576 -
1691481215.686456-CDS-H-paniculata_contig41418:1420..15761691481215.686456-CDS-H-paniculata_contig41418:1420..1576Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig41418 1421..1576 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig41418.10650.1

>prot_H-paniculata_contig41418.10650.1 ID=prot_H-paniculata_contig41418.10650.1|Name=mRNA_H-paniculata_contig41418.10650.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=192bp
KADVCGFWSFRKLSPKFRPPERLVRFLNQSTRDNTPVFCVGLGSMPGLGL
IQGVREVMSLVVSCLVEAGISVVLLDSDSATSPAPPGGGSPERKVCDTEN
IAGHITNTPNLPLSRPPPSPPPPPITTTTTTATTTTAITTTSTVTRGSVL
YLAAAGAVEGEESFVPHLWLLPRCRGLVHHGGSGTTGAALE*
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mRNA from alignment at H-paniculata_contig41418:649..1576-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig41418.10650.1 ID=mRNA_H-paniculata_contig41418.10650.1|Name=mRNA_H-paniculata_contig41418.10650.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=928bp|location=Sequence derived from alignment at H-paniculata_contig41418:649..1576- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGGCCGACGTCTGCGGATTTTGGAGCTTTCGGAAGCTGTCACCGAAGTT
CCGACCTCCGGAGCGGCTGGTTCGATTCCTTAACCAATCAACGCGCGACA
ACACGCCGGTGTTTTGCGTCGGCCTCGGGTCCATGCCGGGCCTAGGCCTC
ATTCAGGTAAAACAACGTAACATGGATGGCGAAGATGGCGCAGCTGTATT
GCGAGCGGCAAGTTTTGAGGGGGGGGAGGCGAGATGAACATGTAGGGTAT
GCGTGTTTTCAGTGCTCGTTGCTGTAATAGGTCATGATTTTGTCTATGTA
CAACATTTCATTTATCCCTCCTCCCCCTTACCTCTTTCTATCTCGTTCCC
CGTCTTCGTTGCCTCGTTGTCAGGGCGTACGTGAAGTGATGTCCCTGGTT
GTATCTTGTTTGGTGGAGGCGGGCATCTCGGTAGTACTTCTTGACAGTGA
TTCGGCCACTTCACCAGCACCACCAGGAGGAGGATCTCCGGGTATTGCTG
TGATTGTCGACGGTGGCAGCAGGATTAGTGCGCCCAATAAAGAGAAAAAG
ATTGCATCAGTTGAACGTACGCGATTGCCTGGATGCACGCCTCCTCCTCA
AGACAAACAAGAAACAAAAGGAGAAGAACGAAAAGTGTGTGACACGGAGA
ATATAGCGGGACATATAACGAATACACCCAACCTACCACTATCGCGACCA
CCACCATCACCGCCGCCGCCGCCAATAACAACAACAACAACAACAGCCAC
AACCACAACAGCCATAACCACAACGTCAACGGTGACGCGGGGAAGCGTGT
TGTATCTTGCAGCTGCTGGCGCTGTAGAAGGAGAGGAGTCTTTCGTGCCA
CACCTTTGGCTGTTGCCGCGATGTCGAGGTCTTGTCCACCACGGAGGCAG
CGGTACAACAGGGGCCGCACTCGAGTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig41418:649..1576-

>mRNA_H-paniculata_contig41418.10650.1 ID=mRNA_H-paniculata_contig41418.10650.1|Name=mRNA_H-paniculata_contig41418.10650.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1152bp|location=Sequence derived from alignment at H-paniculata_contig41418:649..1576- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGGCCGACGTCTGCGGATTTTGGAGCTTTCGGAAGCTGTCACCGAAGTT
CCGACCTCCGGAGCGGCTGGTTCGATTCCTTAACCAATCAACGCGCGACA
ACACGCCGGTGTTTTGCGTCGGCCTCGGGTCCATGCCGGGCCTAGGCCTC
ATTCAGAAGGCCGACGTCTGCGGATTTTGGAGCTTTCGGAAGCTGTCACC
GAAGTTCCGACCTCCGGAGCGGCTGGTTCGATTCCTTAACCAATCAACGC
GCGACAACACGCCGGTGTTTTGCGTCGGCCTCGGGTCCATGCCGGGCCTA
GGCCTCATTCAGGGCGTACGTGAAGTGATGTCCCTGGTTGTATCTTGTTT
GGTGGAGGCGGGCATCTCGGTAGTACTTCTTGACAGTGATTCGGCCACTT
CACCAGCACCACCAGGAGGAGGATCTCCGGGGCGTACGTGAAGTGATGTC
CCTGGTTGTATCTTGTTTGGTGGAGGCGGGCATCTCGGTAGTACTTCTTG
ACAGTGATTCGGCCACTTCACCAGCACCACCAGGAGGAGGATCTCCGGAA
CGAAAAGTGTGTGACACGGAGAATATAGCGGGACATATAACGAATACACC
CAACCTACCACTATCGCGACCACCACCATCACCGCCGCCGCCGCCAATAA
CAACAACAACAACAACAGCCACAACCACAACAGCCATAACCACAACGTCA
ACGGTGACGCGGGGAAGCGTGTTGTATCTTGCAGCTGCTGGCGCTGTAGA
AGGAGAGGAGTCTTTCGTGCCACACCTTTGGCTGTTGCCGCGATGTCGAG
GTCTTGTCCACCACGGAGGCAGCGGTACAACAGGGGCCGCACTCGAGTAA
AACGAAAAGTGTGTGACACGGAGAATATAGCGGGACATATAACGAATACA
CCCAACCTACCACTATCGCGACCACCACCATCACCGCCGCCGCCGCCAAT
AACAACAACAACAACAACAGCCACAACCACAACAGCCATAACCACAACGT
CAACGGTGACGCGGGGAAGCGTGTTGTATCTTGCAGCTGCTGGCGCTGTA
GAAGGAGAGGAGTCTTTCGTGCCACACCTTTGGCTGTTGCCGCGATGTCG
AGGTCTTGTCCACCACGGAGGCAGCGGTACAACAGGGGCCGCACTCGAGT
AA
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