mRNA_H-paniculata_contig41412.10649.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig41412.10649.1
Unique NamemRNA_H-paniculata_contig41412.10649.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig41412.10649.1 vs. uniprot
Match: D7FS78_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FS78_ECTSI)

HSP 1 Score: 160 bits (405), Expect = 5.280e-45
Identity = 79/123 (64.23%), Postives = 94/123 (76.42%), Query Frame = 1
Query:    1 AVMVLSRLFLFVRYTKKHFVGVVLCLGGLALTVLSDLLNSDPNSGHTHAIKGDVLCILGAAMYGASNVMQENFVKNHDRVEFLGMAGAFGVILSGVQTAALEWNELAEVVWTDQVVLFVIGYS 369
            AVM+LSRL L  +Y +KH  GV LC+ GLALT++SDL   + +SGH HA KGDVLCILGA +Y  SNVMQE+FVKN++R EFLGMAG FG ++SGVQT ALE   LAEV WT  VVLF  GY+
Sbjct:  158 AVMILSRLLLRAQYNEKHMTGVGLCVVGLALTIVSDLQGDEADSGHPHAFKGDVLCILGATLYAGSNVMQEDFVKNYNRREFLGMAGLFGTVISGVQTLALEKQLLAEVEWTRSVVLFTFGYA 280          
BLAST of mRNA_H-paniculata_contig41412.10649.1 vs. uniprot
Match: A0A836CB98_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CB98_9STRA)

HSP 1 Score: 120 bits (301), Expect = 3.770e-30
Identity = 62/120 (51.67%), Postives = 82/120 (68.33%), Query Frame = 1
Query:    7 MVLSRLFLFVRYTKKHFVGVVLCLGGLALTVLSDLLNSDPNSGHTHAIKGDVLCILGAAMYGASNVMQENFVKNHDRVEFLGMAGAFGVILSGVQTAALEWNELAEVVWTDQVVLFVIGY 366
            M++SRLFL  RYT KH +GV+LCL GLALTV++DL +     GH+   KGD+LC+ GA +YG  NVMQE+ VK HDR E LGM GAFGV+ +GVQ   LE   + ++ ++     FV+ Y
Sbjct:  123 MLMSRLFLDARYTSKHLLGVLLCLVGLALTVINDLEDKTAMKGHS--FKGDLLCLGGAFLYGCLNVMQESIVKKHDRSELLGMTGAFGVLFAGVQFLILERGPMQDMHYSHAGAAFVLLY 240          
BLAST of mRNA_H-paniculata_contig41412.10649.1 vs. uniprot
Match: UPI0009E42797 (solute carrier family 35 member F1-like n=1 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E42797)

HSP 1 Score: 113 bits (283), Expect = 1.470e-27
Identity = 62/124 (50.00%), Postives = 81/124 (65.32%), Query Frame = 1
Query:    1 AVMVLSRLFLFVRYTKKHFVGVVLCLGGLALTVLSDLLNSDP-NSGHTHAIKGDVLCILGAAMYGASNVMQENFVKNHDRVEFLGMAGAFGVILSGVQTAALEWNELAEVVWTDQVVLFVIGYS 369
            +V+VLS +FL VRY   H+ GV+ CL G+A  V++D   S    SG   AI GDVL + GA MYG SNV QE  VKN  RVEFLGM G FG I+S +Q   LE ++L+ + W  ++VLF+IG+ 
Sbjct:  133 SVLVLSWIFLKVRYECIHYSGVLTCLAGIACLVVADYYGSRYYGSGKNQAI-GDVLVLCGAVMYGVSNVAQEFVVKNFSRVEFLGMIGLFGSIISAIQMVILERHQLSTIEWDSKIVLFIIGFG 255          
BLAST of mRNA_H-paniculata_contig41412.10649.1 vs. uniprot
Match: A0A6P4Y351_BRABE (LOW QUALITY PROTEIN: solute carrier family 35 member F2-like n=4 Tax=Branchiostoma TaxID=7737 RepID=A0A6P4Y351_BRABE)

HSP 1 Score: 112 bits (281), Expect = 4.140e-27
Identity = 57/122 (46.72%), Postives = 82/122 (67.21%), Query Frame = 1
Query:    4 VMVLSRLFLFVRYTKKHFVGVVLCLGGLALTVLSDLLNSDPNSGHTHAIKGDVLCILGAAMYGASNVMQENFVKNHDRVEFLGMAGAFGVILSGVQTAALEWNELAEVVWTDQVVLFVIGYS 369
            V+VLS +FL  R+   H+ G+ +CL G+   V +DLL+   + G T  + GD+LC+LGAA+YG SNV +E  V++  RVEFLGM G FG ++ G+Q A LE +ELA + WT QV L  +G++
Sbjct:  148 VLVLSWIFLHSRFKWVHYGGIAVCLLGVGSLVGADLLSGRDHVGGTDKLLGDMLCLLGAALYGVSNVAEEYVVRHFTRVEFLGMLGIFGSVICGLQLAILERHELATIQWTWQVGLLFVGFA 269          
BLAST of mRNA_H-paniculata_contig41412.10649.1 vs. uniprot
Match: A0A1I7VN01_LOALO (Uncharacterized protein n=1 Tax=Loa loa TaxID=7209 RepID=A0A1I7VN01_LOALO)

HSP 1 Score: 113 bits (283), Expect = 7.460e-27
Identity = 54/122 (44.26%), Postives = 81/122 (66.39%), Query Frame = 1
Query:    4 VMVLSRLFLFVRYTKKHFVGVVLCLGGLALTVLSDLLNSDPNSGHTHAIKGDVLCILGAAMYGASNVMQENFVKNHDRVEFLGMAGAFGVILSGVQTAALEWNELAEVVWTDQVVLFVIGYS 369
            V++LS LFL  RY   H +GV +CL G+A+ + +D L     SG ++ I GDVLC+ G+ +Y   NV +E  VK ++RVE+LGM G FG I+SG+Q AALE  ELA + W+  +V++ + ++
Sbjct:  289 VLLLSWLFLSTRYLLTHIIGVGICLIGIAVLIWADALEGKGASGGSNRILGDVLCLTGSVLYAVGNVCEEFLVKQNNRVEYLGMVGLFGSIISGIQLAALEHRELASINWSGMIVVYYVLFA 410          
BLAST of mRNA_H-paniculata_contig41412.10649.1 vs. uniprot
Match: K3W9Z4_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3W9Z4_GLOUD)

HSP 1 Score: 110 bits (275), Expect = 1.010e-26
Identity = 58/127 (45.67%), Postives = 80/127 (62.99%), Query Frame = 1
Query:    4 VMVLSRLFLFVRYTKKHFVGVVLCLGGLALTVLSDLLNSDPN-----SGHTHAIKGDVLCILGAAMYGASNVMQENFVKNHDR-VEFLGMAGAFGVILSGVQTAALEWNELAEVVWTDQVVLFVIGY 366
            VM+LS +FL  +YT+ HFV V  CLGG+ + V+SD+L    N     S +  A+ GD LC+LG+++Y  SNV QE  VK  DR +EFLGM G  G ++S +Q  A E + L E+ WT   VL ++GY
Sbjct:  107 VMLLSAVFLSAKYTRMHFVAVSFCLGGITILVVSDILRDQANWDGQFSWNASALYGDFLCLLGSSIYACSNVGQEYLVKKKDRQMEFLGMIGLCGFVISSLQAVAFEGDVLREIQWTTPSVLCLLGY 233          
BLAST of mRNA_H-paniculata_contig41412.10649.1 vs. uniprot
Match: A0A0R3RI81_9BILA (Uncharacterized protein n=1 Tax=Elaeophora elaphi TaxID=1147741 RepID=A0A0R3RI81_9BILA)

HSP 1 Score: 113 bits (282), Expect = 1.070e-26
Identity = 54/122 (44.26%), Postives = 81/122 (66.39%), Query Frame = 1
Query:    4 VMVLSRLFLFVRYTKKHFVGVVLCLGGLALTVLSDLLNSDPNSGHTHAIKGDVLCILGAAMYGASNVMQENFVKNHDRVEFLGMAGAFGVILSGVQTAALEWNELAEVVWTDQVVLFVIGYS 369
            V++LS LFL  RY   H +GV +CL G+A+ + +D L    +SG ++ + GDVLC+ G+ +Y   NV +E  VK + RVE+LGM G FG I+SG+Q AALE  ELA V W+  +V++ + ++
Sbjct:  283 VLLLSWLFLSTRYLLTHIIGVGICLVGIAVLIWADALEGKGSSGDSNRVLGDVLCLTGSILYAVGNVGEEFLVKQNSRVEYLGMVGLFGSIISGIQLAALEHRELASVNWSGTIVVYYLLFA 404          
BLAST of mRNA_H-paniculata_contig41412.10649.1 vs. uniprot
Match: A0A4U5PCG7_STECR (Uncharacterized protein n=2 Tax=Steinernema carpocapsae TaxID=34508 RepID=A0A4U5PCG7_STECR)

HSP 1 Score: 112 bits (279), Expect = 1.130e-26
Identity = 58/117 (49.57%), Postives = 79/117 (67.52%), Query Frame = 1
Query:    4 VMVLSRLFLFVRYTKKHFVGVVLCLGGLALTVLSDLLNSDPNSGHTHAIKGDVLCILGAAMYGASNVMQENFVK-NHDRVEFLGMAGAFGVILSGVQTAALEWNELAEVVWTDQVVL 351
            VMVLS LFL VRY   H +GV +CL G+A  ++SD+L+    +G +    GD+LCI G+ +Y  +NV +E  +K N+ RVE+LGM G FG I+SG+Q A +E N LAEV WT  V+L
Sbjct:  187 VMVLSWLFLSVRYLTSHVIGVGVCLVGIACVIVSDVLSGKGLAGGSDRFLGDMLCIGGSLLYAIANVAEEYLIKQNNSRVEYLGMVGLFGSIISGIQLAIIERNNLAEVNWTTSVIL 303          
BLAST of mRNA_H-paniculata_contig41412.10649.1 vs. uniprot
Match: A0A3P7DNH2_WUCBA (Uncharacterized protein n=1 Tax=Wuchereria bancrofti TaxID=6293 RepID=A0A3P7DNH2_WUCBA)

HSP 1 Score: 109 bits (272), Expect = 1.230e-26
Identity = 48/122 (39.34%), Postives = 79/122 (64.75%), Query Frame = 1
Query:    4 VMVLSRLFLFVRYTKKHFVGVVLCLGGLALTVLSDLLNSDPNSGHTHAIKGDVLCILGAAMYGASNVMQENFVKNHDRVEFLGMAGAFGVILSGVQTAALEWNELAEVVWTDQVVLFVIGYS 369
            V++LS LFL  RY   H +GV +CL G+ + + +D L     SG ++ + GDVLC++G+ +Y   NV +E  VK + R+E+LGM G FG I+SG+Q A LE  +LA + W+  ++++ + ++
Sbjct:    2 VLLLSWLFLSTRYLLTHIIGVGICLIGITVLIWADALEGKGTSGDSNRVLGDVLCLIGSILYAIGNVSEEFLVKQNSRIEYLGMVGLFGSIISGIQLATLEHRQLASINWSGMIIIYYLLFA 123          
BLAST of mRNA_H-paniculata_contig41412.10649.1 vs. uniprot
Match: G0P980_CAEBE (Uncharacterized protein n=2 Tax=Caenorhabditis brenneri TaxID=135651 RepID=G0P980_CAEBE)

HSP 1 Score: 111 bits (278), Expect = 1.680e-26
Identity = 54/118 (45.76%), Postives = 74/118 (62.71%), Query Frame = 1
Query:    1 AVMVLSRLFLFVRYTKKHFVGVVLCLGGLALTVLSDLLNSDPNSGHTHAIKGDVLCILGAAMYGASNVMQENFVKNHDRVEFLGMAGAFGVILSGVQTAALEWNELAEVVWTDQVVLF 354
            AV++LS LFL VRY   H +GV +CL G+A  + +D L +    G +  + GD+LC+  A +Y   NV +E  VK H R E+LGM G FG I+SGVQTA  E   L+++VWT + V F
Sbjct:  178 AVLLLSWLFLSVRYLASHILGVTICLIGIACVIWADALGAKGLEGGSERVFGDILCLAAALLYAVCNVAEEFLVKQHSRTEYLGMVGLFGCIVSGVQTAIFEQEALSKIVWTGETVSF 295          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig41412.10649.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FS78_ECTSI5.280e-4564.23Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CB98_9STRA3.770e-3051.67Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
UPI0009E427971.470e-2750.00solute carrier family 35 member F1-like n=1 Tax=Or... [more]
A0A6P4Y351_BRABE4.140e-2746.72LOW QUALITY PROTEIN: solute carrier family 35 memb... [more]
A0A1I7VN01_LOALO7.460e-2744.26Uncharacterized protein n=1 Tax=Loa loa TaxID=7209... [more]
K3W9Z4_GLOUD1.010e-2645.67Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A0R3RI81_9BILA1.070e-2644.26Uncharacterized protein n=1 Tax=Elaeophora elaphi ... [more]
A0A4U5PCG7_STECR1.130e-2649.57Uncharacterized protein n=2 Tax=Steinernema carpoc... [more]
A0A3P7DNH2_WUCBA1.230e-2639.34Uncharacterized protein n=1 Tax=Wuchereria bancrof... [more]
G0P980_CAEBE1.680e-2645.76Uncharacterized protein n=2 Tax=Caenorhabditis bre... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig41412contigH-paniculata_contig41412:328..1083 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score157.9
Seed ortholog evalue3e-36
Seed eggNOG ortholog2880.D7FS78
KEGG koko:K15287
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.transmembrane transporter activity
EggNOG OGsCOG0697@1,KOG2766@2759
COG Functional cat.EG
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Exons2
Model size378
Cds size372
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig41412.10649.1prot_H-paniculata_contig41412.10649.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig41412 328..1077 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930262.8558817-CDS-H-paniculata_contig41412:327..4681622930262.8558817-CDS-H-paniculata_contig41412:327..468Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig41412 328..468 -
1691481215.6260898-CDS-H-paniculata_contig41412:327..4681691481215.6260898-CDS-H-paniculata_contig41412:327..468Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig41412 328..468 -
1622930262.873354-CDS-H-paniculata_contig41412:846..10771622930262.873354-CDS-H-paniculata_contig41412:846..1077Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig41412 847..1077 -
1691481215.6391551-CDS-H-paniculata_contig41412:846..10771691481215.6391551-CDS-H-paniculata_contig41412:846..1077Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig41412 847..1077 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930262.89067-UTR-H-paniculata_contig41412:1077..10831622930262.89067-UTR-H-paniculata_contig41412:1077..1083Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig41412 1078..1083 -
1691481215.648131-UTR-H-paniculata_contig41412:1077..10831691481215.648131-UTR-H-paniculata_contig41412:1077..1083Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig41412 1078..1083 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig41412.10649.1

>prot_H-paniculata_contig41412.10649.1 ID=prot_H-paniculata_contig41412.10649.1|Name=mRNA_H-paniculata_contig41412.10649.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=124bp
MVLSRLFLFVRYTKKHFVGVVLCLGGLALTVLSDLLNSDPNSGHTHAIKG
DVLCILGAAMYGASNVMQENFVKNHDRVEFLGMAGAFGVILSGVQTAALE
WNELAEVVWTDQVVLFVIGYSTR*
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mRNA from alignment at H-paniculata_contig41412:328..1083-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig41412.10649.1 ID=mRNA_H-paniculata_contig41412.10649.1|Name=mRNA_H-paniculata_contig41412.10649.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=756bp|location=Sequence derived from alignment at H-paniculata_contig41412:328..1083- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCCGTAATGGTGCTGTCCCGCCTGTTTCTCTTCGTGCGCTACACCAAAAA ACACTTCGTCGGCGTGGTCCTCTGTCTAGGGGGCCTAGCATTGACCGTGC TGTCGGACTTGCTCAATTCCGATCCGAACTCTGGTCACACACACGCTATC AAGGGAGATGTTTTGTGCATCCTGGGGGCCGCGATGTATGGGGCCTCCAA CGTTATGCAGGAGAACTTCGTAAAAAATCATGATCGGGTGTGTGGGCCGG GGGGGGGGGCGGTTCGGGGTTTCTTTGTGCACTTCGTACAGTGGTAGCGT TTCTCCTCCGCCCTTAGCAAGTACACTACTGTTGCGACAGTCGATGCGCG AGCCATTGTTGTTGTTGTTGTTGATGATGTTGTTGTTGCTTGTTCTGGTG CTGCTATCGCCTTCTGTCAAAAGTTCTGGACTTGTATGCCGACGTATGAT ATCCTCCCTGGGCTTTTGGGGTTTGTGACGAGGCAAAAGTGGGCAGTACG TCGCAGAAACTGCACCGGCCGCACACGTTTGTACCGCATGTTGCGTCGCA GCCTTCTTGCTTTTCTTGTTTCATTGTTACGTTGTCACATTGTTGTGTAC ATGACGCATGTTAAGGTGGAGTTCCTAGGAATGGCGGGCGCTTTCGGGGT TATTCTTTCCGGGGTTCAGACGGCGGCGCTGGAATGGAATGAGCTGGCCG AAGTGGTCTGGACCGACCAAGTGGTGCTGTTTGTCATCGGCTATTCTACC AGGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig41412:328..1083-

>mRNA_H-paniculata_contig41412.10649.1 ID=mRNA_H-paniculata_contig41412.10649.1|Name=mRNA_H-paniculata_contig41412.10649.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=744bp|location=Sequence derived from alignment at H-paniculata_contig41412:328..1083- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTGCTGTCCCGCCTGTTTCTCTTCGTGCGCTACACCAAAAAACACTT
CGTCGGCGTGGTCCTCTGTCTAGGGGGCCTAGCATTGACCGTGCTGTCGG
ACTTGCTCAATTCCGATCCGAACTCTGGTCACACACACGCTATCAAGGGA
GATGTTTTGTGCATCCTGGGGGCCGCGATGTATGGGGCCTCCAACGTTAT
GCAGGAGAACTTCGTAAAAAATCATGATCGGATGGTGCTGTCCCGCCTGT
TTCTCTTCGTGCGCTACACCAAAAAACACTTCGTCGGCGTGGTCCTCTGT
CTAGGGGGCCTAGCATTGACCGTGCTGTCGGACTTGCTCAATTCCGATCC
GAACTCTGGTCACACACACGCTATCAAGGGAGATGTTTTGTGCATCCTGG
GGGCCGCGATGTATGGGGCCTCCAACGTTATGCAGGAGAACTTCGTAAAA
AATCATGATCGGGTGGAGTTCCTAGGAATGGCGGGCGCTTTCGGGGTTAT
TCTTTCCGGGGTTCAGACGGCGGCGCTGGAATGGAATGAGCTGGCCGAAG
TGGTCTGGACCGACCAAGTGGTGCTGTTTGTCATCGGCTATTCTACCAGG
TGAGTGGAGTTCCTAGGAATGGCGGGCGCTTTCGGGGTTATTCTTTCCGG
GGTTCAGACGGCGGCGCTGGAATGGAATGAGCTGGCCGAAGTGGTCTGGA
CCGACCAAGTGGTGCTGTTTGTCATCGGCTATTCTACCAGGTGA
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