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Homology
BLAST of mRNA_H-paniculata_contig4141.10648.1 vs. uniprot
Match: D7G139_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G139_ECTSI) HSP 1 Score: 146 bits (369), Expect = 1.540e-39 Identity = 73/105 (69.52%), Postives = 83/105 (79.05%), Query Frame = 1
Query: 49 RPTLHRHASNSSIGSIGSLSRGMSELSFGSYAPANMTDDEQDLRDTWFPKARDCTCCKGFVYGCTSDICESMGQCTCSIEESDLKGGDSIWSSANGMDDLPSSPH 363
RP L+R SN+S S+ +RGMSELSFGSY PAN TDDEQDLRDTWFPKARDCTCCKGFVYGCT+DIC+SMGQCTCSIEE+DL G + S+ + D SPH
Sbjct: 146 RPALNRGTSNNSAVSV---TRGMSELSFGSYPPANATDDEQDLRDTWFPKARDCTCCKGFVYGCTADICDSMGQCTCSIEEADLDGSSDVASNISRTD----SPH 243
BLAST of mRNA_H-paniculata_contig4141.10648.1 vs. uniprot
Match: A0A836CHD1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHD1_9STRA) HSP 1 Score: 85.1 bits (209), Expect = 2.700e-17 Identity = 30/48 (62.50%), Postives = 43/48 (89.58%), Query Frame = 1
Query: 160 DDEQDLRDTWFPKARDCTCCKGFVYGCTSDICESMGQCTCSIEESDLK 303
+ +Q+L DTWFP++RDCTCC+GFVYGC DIC ++G+CTC++EESD++
Sbjct: 139 EQDQELADTWFPRSRDCTCCRGFVYGCAGDICAALGKCTCAVEESDME 186
BLAST of mRNA_H-paniculata_contig4141.10648.1 vs. uniprot
Match: A0A7S0MWD6_9CHLO (Hypothetical protein n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0MWD6_9CHLO) HSP 1 Score: 59.7 bits (143), Expect = 1.900e-7 Identity = 22/38 (57.89%), Postives = 29/38 (76.32%), Query Frame = 1
Query: 169 QDLRDTWFPKARDCTCCKGFVYGCTSDICESMGQCTCS 282
Q ++TW+ AR+CTCCKGFVYGCT+ C + +CTCS
Sbjct: 147 QIKKETWYANARNCTCCKGFVYGCTTPACAAQEECTCS 184
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | other localisation |
| Exons | 4 |
| Model size | 488 |
| Cds size | 486 |
| Stop | 0 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig4141.10648.1 >prot_H-paniculata_contig4141.10648.1 ID=prot_H-paniculata_contig4141.10648.1|Name=mRNA_H-paniculata_contig4141.10648.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=162bp
GGGGGAGGAGLGVGGARPTLHRHASNSSIGSIGSLSRGMSELSFGSYAPA NMTDDEQDLRDTWFPKARDCTCCKGFVYGCTSDICESMGQCTCSIEESDL KGGDSIWSSANGMDDLPSSPHTSGHNGGGKHPPQPPTEAALAAASPRALS TAPPVAAGGGAG back to topmRNA from alignment at H-paniculata_contig4141:6075..13699+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig4141.10648.1 ID=mRNA_H-paniculata_contig4141.10648.1|Name=mRNA_H-paniculata_contig4141.10648.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=7625bp|location=Sequence derived from alignment at H-paniculata_contig4141:6075..13699+ (Halopteris paniculata Hal_grac_a_UBK monoicous) GGTGGTGGTGGTGGGGCCGGGGGAGCCGGGCTCGGGGTCGGCGGCGCGAG
ACCGACATTGCATCGCCACGCTAGCAACAGCAGTATCGGGTCCATCGGTT
CACTATCCAGAGGCATGTCTGAGGTGAGAGCAACTGGTGTTGTGTTTGCT
CGGTGCGGTAGAGCGAGGGGACGAATGGTGTATAGAGCTACTTGTATACC
GTGCCGTACACGGTATTGCTTTTTTTATGTATTATTAAACGATATATTTT
AGACGGATAGATTTTCCTGAAAAGTCTACCGCGTATGGTAATAATATGCC
ACCGCCCACTTGTTGTTGCTAGTTATGGAAGCGTTTCCTTCGATGTTGGG
ATTTGTCGAGATTGATGAGTAAATAGATGGGTTGCTTTTGATAGGGCAGC
ATGGCTACAGCAGTTTTTTTTTTTTTTTATGTTTGTCGAGAAAGGTTATG
TTTCATCAGGAGATGAAGTGTGGGTTGGGTGTGATGCGCTGTAGACCATG
GTCCCTTGGTTTTTGGGTGTGGCGTTTATATCCTGCAGTGATTCCTTTTG
GCGATAAGCGTCCACAAGTGATAAAATTGTAAGTTCTCCAGCATAACTTC
GACATGGATTTGAAGGAGTTTGTTCTGGTAACTGTGGCAAGCGGAGTTTA
CCTTATCTCTCCGGGGGTACATGGTTGTTGCCCCCAGTGGTCTCATCCTT
GTGACTCACGATAGAGATGTCGATGTTGCATGTGTTGAAATATATTTTTT
AAGGAGGTCGGCAAGGTAGCCGACACGTGAACTAGCCGTACTTGAGTTGA
TGAGTACCAGGCGAGTATAACCTTGACGTGAGAGCCCAAAACTGGGTAAA
ATGCGTCGGACGTTATTTGTAATTCTATTGTGATTTTATCAGACTTTGGA
TGTTATTTGTAATTCTATTGTGATTCTATCAGACGTTGGATGTTATTTGT
AATTCTGTTGTGATTTTATCAGACGTTGGATGTTATTTGTAATTCTGTTG
TGATTTTATCAGACGTTGGATGTTATTTGTAATTCTGTTGTGATTTTATC
AGATATTGGATGTTATTTGGAGTTCAATTGTGGTTTTATCAGGACGTTGG
ATGAATGGTGTTATGCTTCATTTGATAAAGAGGTGTATATCTCTGTCTAT
ATCTATATCTATACATATACATATACACACACACATATATATATACATAG
ATAACTATATTAGATATAGATATAATACTAATAGTATTTATTATTATTAT
AGCTTGGGTAGTAGTAGTATTGTATAATATTTACCCACCGGTAGACGCCG
AGGACCTCGAGGAGCAGGTCCACCCCTACGAGACCCAAACATAACAGGCT
ATGGATTGGATTCAAAGATAGCGCGAGGATAGGTGAAAGAACTAAGACCT
TAAGTGCCTTATTGACACGCGATGAGGTAAGGACGATACGGTGTTGGTTA
AAATGCGCTCAGTCCTCGGCGAGATCGGTTCAAATCCATGGTGCTCAGAA
ACAAGAGAGGTGGTAGTGCAAATGCCTCCTTTCGTTTTTGAACTAACCAG
GTAGGGAGAGTATGTACAAATGTTTTGGAGTGGGACAAGGTATACCTGAT
AAACTAGTGTAGTGAGTACGGCATGTGTATTTTTTTCTCGGTGGGCCGCG
GCATTAGGAATGTCGGGATGACGTCGCTGATTGGATACTGCCACCAAGTA
AAGAGTTTTGCTTCGTTTCATCTTTTTTTTTTGTTTGCTCGTGTTCGCCC
CAGTCCCGAATGCGAATACCGAACGCATGTGTACCGTACGCAAGTGGAGC
TATTGGACGCGGCATCAGCACAGTTTTTGTAGCGGACACAAACAAGGCAC
CCCACCCGTTACGTGTATCCCCGTGCTAATGGTTTATTTTATATCTACCG
TGCCAACGGGTGTGTGGGTACAAAATATTCCTCATTTTTTTTTTTTTTTG
GTTTTGCGATCACTGAGGAAATACTTTTGCTTTTTTTTTTTTTTGTGATG
TCTTAGTTTTAGCCCAGTGCCGTAGGTACATCATCTCTTATCTGTGTGCC
GTTTGGATTTTGCGGACAAGACGTGTTACATTACATAGCTTTAGCATGAT
GTGTAGGATTTACTGGGAAATGATTTAGGTTATGGCAAACATCGACGCGG
GTTGATAGCTTTACCGGGGTTCATGAATGGGTGAAATTGGTCTCTTTTTG
TCAGTGTGTAGTGCTATTGGCAGGTTATGTTAGGTCTAGGCACTTTGCAC
ATGCGATTAGTACGGTTAGACGCCTTATGAGTAGCAGTCATGATACCCCC
TCCCCCCTCCCCCTGTATCATGTAGGGTATAGCAAGTTGATTACTTGGAG
AAGCAAGACTCGGTACTTATCAGTGAGGCTGCATCTCCCCCACTTGCTAC
TGCTGACAAGATATCGATGAGATGTGCCGATAAGCAAGAATGCCTTATTT
CTATATTTATTTATTTTCGATGTACTTTAAAGGTGGTGTAGCTAGGTTGT
TCGAAAGATCCAAATAAAGCAGAATTTGAAAAGATGAAAGGGTTTATTAG
CTGGATGAAGAAACGGATGTATCGTGCTACTGAACTCTGCGTCCAATATG
TATATACGATATTCATACCGTATCAAACCCCCTGGTATTATATCTCAAAT
TCCATTTTCTCGATAATGACGGTGCTCATGACGCCGTTAACGGTATCATT
GGAAAGATCTCGTTGAGATATTTGGATAGACCTGTTGTTTCGGCAGTGTC
GTTGGATAAATAATATTGGTTCTTGAGATAATCTTGAGGGTTTGGGCAGT
AATACGACGGCGTGCGACATCAAAGGGTGCTACGAATGAGATATATTCGA
CATGGGTAAAGCGCGCTCGACGTGTGACACATTTGAATGGCCTTGAGGAT
GAAAACGATGGCGCGAAGTTGGAGAGAGCTTGCAATCCTCCGCGAGTACA
TACGACGTTAGCTCTCTGCGTTTGTGTTTAGCATCTTTCTTTTTAATATA
TGTGTAAATTGGGCTTTATGTTGTGTCGTTGATGCGTAGTGCGTTTACTG
GTAGTCTTGTTGCGAAAATCTATAACAGTTCTTATGACTCTCCGCCGAAC
ATGCAGCATGACCGTGTGCTGCTGTTTTGCCTATAGTGTTTTGCTACACA
CAGAGAGAGGTAAGCGTACCGTACTAAACATATTGATAGTTTCTTTGTGA
TGTACATCTCACGCCAGCAATATGCAGTTGCTCTAGGGATTGATCTATGC
AGTATTGACCGATTTTATTAGTACACCAATACTTGAGAAGAGTTTGCGGA
ACCGAGCCCTCGTGTGTATGATTCAAGCATTGGAAGCTTTACATTTTATC
CATGGATGAACAGGGAACACAGAATTCCACACTGGCATGCGTGCCATGAC
TTAGCACGGACCGAGAAAGTAGCCGTTGAATATTTCCGCAAAAGCTACTG
CAACGCAACGCAACGCAACGCAACGTGAATTCACCTTTTGTCCCTGTGTG
TGTCGTGTGTGTGTGTGTGTGTGTTTAACTTTTTTGCAGCTGTCGTTCGG
CTCCTATGCGCCGGCTAACATGACCGATGATGAGCAGGACTTGAGGGACA
CGTGGTTTCCAAAGGCTCGTGACTGTACATGCTGCAAGGTGAAGAATCAT
GACGTCCAGTGCTCGTGTCGCTCATGTTGACAAGATCGATAAAAAAACCC
CGCCAGGAGTAGAGTAAGAGAGACGTGGATGGGTGCCCTGGCAAACGGGT
CACCTCAGACTGGCGGGCGGGCAGCGTAACGGCGAGGCAACGATACGCTT
TTTGCCACTTGTTTATTTAGTCCCGTTGTAACGAGCTTTGCATTTTGTAT
TAGGTGTCGTCGAGTCGAGTTTTGTCAACTGTAGCTGTATTTGAATGACT
TACAGTCGCTGAGCGGAACATACACATCGTTGCAGCTGAAGCGATATTAT
AGCCTTTACACACACATGGTCTAGTTGTGGTTTTGATTTGCAATGTCATC
AGTCAGCTGTTGTGTTTTATCTTTCACGCGAGACAAACACATCGTTGCGC
CTGAAACGACCAATCAAACTTTTTGCACGTGATCGATCAAATTAATACAA
CCCCCCCCCCCCCCTCCTCCTCGACTTGAGCGCAAACGTCTTAATGCGAT
GTACGAATTTCTATGTACTTGGTCCAAATGCGGGGGAATTTGTGCCGTTC
TGTGATTGGTTCCTTAAGTACCAACGGGTCTGATTTTTCCCCGCCCTCGG
GAGCAAACCGGGATCGCCTGAGAAGCATAGGCGTCTTTGTTATAATGGCG
TTACTTGGTGTTGGGAACGTGCCGTGATTGACAGCATTTCATTTGCAATT
GTGGTACTCCACTGGTCGTTGTTCATCGGTGTTTAGTTACGGAATTTGGT
TGCTTTGGTCGTTACCAATAGGCCGCGCGCGCGCCAAAGTTGGAGGTGGT
TTTGCCGCTGGTATGTCTGCCTTGTGGAAGTTTTCCGCCAAATTATCCTG
TTTAGACACGCCTGACTGAATCGCGAATAGTGTTGTAAGGCTAGGTCGGG
GGCTGTGTGTTGTGCAGGAGTTGAGTGTATTGCGTGCGTGCTAAGTTGAG
TTGGCCATCGTAAGCCTAGGTTGCATTAGGCCACTCTGTGTTGGTTCTTA
TCTACTAGTATCTACTAGTAATTCCCTATTTAATCCGTATCACCTCTAAA
ACAGGGGGAAAACGACACCGATATCATGGCTACGGCGATAGGGAGAGCTG
CCGCTGTTGAGACAGGCAGACAGTCCAGTACAGACAGTTCATACATTCAA
CACAGACAAACCTGGTAGGCATGGATGAATTCGCCCGCACCAACTGTAGC
ACGCTCTCTGTCTGTTTCTCTCTTGAGTTTTTTTTTTCATTTTGGATGTT
TTTTTTTCCGATTCCGGATTAGCCTCCGACGCGGGAAGAACGTTAAGCAC
GACCGCCGCATATTGGAAAAACCGACTGTACCTGTTTTTCGGAAAATGCC
AGCAAATATGCCACCGTGGTGCGAGTTTTTTTTTTGTTTTTTGTGTTCAC
GCATCTACATTCATGCCTATGCGCTGTATTATGCCCGAACTGCTACAGCA
GCACAGCACGCATTGTAGGTACTCTGTACAATGATTCGCAGCTCAGTTGA
AATTTATCATACTTGAAGAAAAACGCCTTCATGAAAACCCCAACCTTTGC
TCAACCTTCGTGCTCGAAAGCAGAAAAATGTGCGGGGGGTGCGCTCGTAT
TCTAGAATCAAGCACTCCACGAAAGGGTGGAAGACCTGCAGCTATTTATC
TACCAATTCGTATGGATTTTAGAAATCGCCAGGTACTCTGGTGCTGCCAT
AGTTTCAAAATTCGCAATGACCTTTATTGGTATTTTTTTTATATCCATCG
ACCTTGATCCGAGATGTGCAACGTTTATTCCAGTTTTTGGTGCCTACTAG
TACTTTGGTAAGGAAACACTGCTCGCGCCGGGAACGATTTTTCGTTTGTT
TTTTTTTTTAATTCTGTTTTATCTGCTTTTTTTGTTTTTTTTGCGTCGCT
GATTGGCGCAGGGGTTCGTGTACGGGTGCACCTCCGACATTTGCGAGTCC
ATGGGCCAGTGCACGTGCAGCATCGAAGAGTCTGACCTTAAGGGAGGTGA
TTCCATTTGGTCGGTGAGAGAAGCAAGCAGTGTTTTATTGGTTGTCGCGA
GATCCTCGGGATCGTATTTCGTTCCTATTATAGTAAGAGTAAAGAGCAAC
CCTCTTGTGTACGTCCGTGTAGTCATAAGTCAATATTTTATCCTTGACCC
AAGTGCGAAGGGCTTACTGCGCTCGCAAGTAACGTAGGCGCGACGTATTT
GTACAAGTACACCGTTTTCTTCGAAAGTACCTCAAGGTTACTGAGGTGCC
CACGTTCAAGACTGGCTAGAACAGTTATTCCGATATTACGTGGCCTTGTG
GAACGTCTTAACTTGTTGACCGATTGAAAAATTAATTAATTAATTAATTA
ATACAGGCAAGTCGATTTGCTATTTAAAGAAAGAGGAGATTCGTCTTTTT
TTTTTTTTTACGGGGAAAAACTTGCTGTTTCAACCCGAGTGGGTATATGT
GGGTATGTGGGTTCCCACCCGTGCTCTTCCTTCATGATTTGATATATATA
TTTGAAAACATATATTTGCTTTCAGAATATTATTACTATTATTACTATTA
TTATTTTTTTAAAAAAAGAACTCGAAGGCGATTTATATTTCAAATTTTAG
GATGATAAAAAAAACAAACGAAACCAATATCCCATGGTTGATCGGGACGG
GACACGAATAAATGGGGACCCCTTTCGTGATGGAAATGATTTAAAAAGGA
AATCCAGTCGTGCTACATACAGTGAATACTTGTAATTCTGGCGGTTTAGA
AAATGGTTTCCCCCCTGGCCACTTCTAAGACAACCAGGAAAGTGCTGTAT
TGGCGGAACCGTTCACAATACTGAAAAACATCCTTTTCTTGCGGACAGCC
AATATGGACCCCCGCCGACAGATTCCGCAGGGGGCAAAAAAATTCGGCGG
ATTTGATTTATTTTCGTCGTCACAGGCACGCAAAAATGAGATGTAAATGT
ATGTTATATAGAGAATTGCTTTTCGCTGTCAGGTGTTTTTTTGTTTTTTT
TTTTCAAGTCTCAACAGAATCTGGTGCAAAGTCACGCGTTTTCTCTGAAT
TTGTTTTTCTCGGAGGCCCTTACGTGGGAGGCACCCTCGTGGGGGAGGGG
GGGGGAGGCTCTGGCGACCCCTGCGAGCAGTAGGCGGGAACCCGCCGACG
AGAGTCCACATTGGACTCCTATTCTATGCGTCGAGGAATCCATTACACTC
GTATACAACCCTAGTTTGAGATATTTTGGTTTGGAAAACATGCATATACG
AACCTTGATGCAGTTGAGTGCGGATCGTTGCCGCGCCATGTAGAGACTTG
TGGCAAATGTTGCTCACCTCTCCCCATTGCCCTCGCGCGCGCTCTCCCCT
GGTTGCTTGTATATTCTAAAAGCGAAAATTATGTCAAACTCTTGTACTGC
ATTGCTTGTGTTGTGCCGTGTGCTGTAGTATTTATTTTTTCCCTGCTTAT
TCAATCAACTGTATTGCAATATGATAGGAGTAATAGATTGCTATTTACGT
ACGTCCTTTACCGTATCACCTCCGTGTTATATACCACCCGTGGTCTCATT
CACTTGTTTGTTTTGCGTTTTTATGCTACTCCCCGCGTTATTTTTTGCGG
GCGCTGATGACTGTGTTATGACTATGTGATGACTCAGTAATGACTCTGTA
ATGACTGTGTGATGATGGCTACATATATGAACATAAGATACGCATTTTTG
AACAAAAATTAGGTAGTTAGGTAGCTTAGATGTTTTGAGATTTAGTGCGG
CGAAGGAAAAGAGGTGGACCGATCAGCATCAATTCTCCCCTCTTCCCCCG
CAACCGCCTGCAGTCTGCGAATGGGATGGATGACTTGCCGTCATCACCGC
ACACTAGCGGACATAATGGGGGGGGCAAGCACCCACCGCAGCCGCCTACA
GAAGCAGCACTAGCAGCAGCCTCGCCAAGAGCATTGAGTACCGCACCACC
GGTAGCCGCCGGAGGGGGAGCGGGG back to topCoding sequence (CDS) from alignment at H-paniculata_contig4141:6075..13699+ >mRNA_H-paniculata_contig4141.10648.1 ID=mRNA_H-paniculata_contig4141.10648.1|Name=mRNA_H-paniculata_contig4141.10648.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=972bp|location=Sequence derived from alignment at H-paniculata_contig4141:6075..13699+ (Halopteris paniculata Hal_grac_a_UBK monoicous) GGTGGTGGTGGTGGGGCCGGGGGAGCCGGGCTCGGGGTCGGCGGCGCGAG ACCGACATTGCATCGCCACGCTAGCAACAGCAGTATCGGGTCCATCGGTT CACTATCCAGAGGCATGTCTGAGGGTGGTGGTGGTGGGGCCGGGGGAGCC GGGCTCGGGGTCGGCGGCGCGAGACCGACATTGCATCGCCACGCTAGCAA CAGCAGTATCGGGTCCATCGGTTCACTATCCAGAGGCATGTCTGAGCTGT CGTTCGGCTCCTATGCGCCGGCTAACATGACCGATGATGAGCAGGACTTG AGGGACACGTGGTTTCCAAAGGCTCGTGACTGTACATGCTGCAAGCTGTC GTTCGGCTCCTATGCGCCGGCTAACATGACCGATGATGAGCAGGACTTGA GGGACACGTGGTTTCCAAAGGCTCGTGACTGTACATGCTGCAAGGGGTTC GTGTACGGGTGCACCTCCGACATTTGCGAGTCCATGGGCCAGTGCACGTG CAGCATCGAAGAGTCTGACCTTAAGGGAGGTGATTCCATTTGGTCGGGGT TCGTGTACGGGTGCACCTCCGACATTTGCGAGTCCATGGGCCAGTGCACG TGCAGCATCGAAGAGTCTGACCTTAAGGGAGGTGATTCCATTTGGTCGTC TGCGAATGGGATGGATGACTTGCCGTCATCACCGCACACTAGCGGACATA ATGGGGGGGGCAAGCACCCACCGCAGCCGCCTACAGAAGCAGCACTAGCA GCAGCCTCGCCAAGAGCATTGAGTACCGCACCACCGGTAGCCGCCGGAGG GGGAGCGGGGTCTGCGAATGGGATGGATGACTTGCCGTCATCACCGCACA CTAGCGGACATAATGGGGGGGGCAAGCACCCACCGCAGCCGCCTACAGAA GCAGCACTAGCAGCAGCCTCGCCAAGAGCATTGAGTACCGCACCACCGGT AGCCGCCGGAGGGGGAGCGGGG back to top
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