mRNA_H-paniculata_contig414.10644.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig414.10644.1
Unique NamemRNA_H-paniculata_contig414.10644.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig414.10644.1 vs. uniprot
Match: D7FRM6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRM6_ECTSI)

HSP 1 Score: 152 bits (384), Expect = 3.330e-39
Identity = 92/230 (40.00%), Postives = 127/230 (55.22%), Query Frame = 2 
Query:  302 ADVASAELEEEIRDFGRRFARFIITRGFGDADGAGGIDASNTPR-------------------------------ADERHRVASVDFAQGGIRSALESSAADAEMELRASQRLALQLQADSDAVRFRVLPSLRENARQLRALFVAIDRLSDHVMPEIEETIAKMEKAMHQMEERRKEQVETRTWNGSYGLGSPWGAGLWVPPSGDRTVHLPEVYETNKILCVERGGLAPL 898
            AD     +EEE+RDF  RFAR +++R F +                                              D           + G RSAL S  A+AE+ LR SQRL  QL+ D+  +R +V P+L ENAR+L AL+VAIDR+++ VMPE++ T+ +MEKA++ +EE RKEQV+TR   GS+GLG   GAGLW P   ++ V +PEV++T+K+  VE GGLAPL
Sbjct:   12 ADDGEVGIEEEVRDFAARFARLVVSRSFREGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDSGRNPGGSSSLRPGERSALGSYVAEAELSLRGSQRLGAQLEKDAGMLRSKVFPALLENARKLHALYVAIDRVTEEVMPEVDATVKRMEKAVYDLEEMRKEQVDTRAPQGSFGLGLALGAGLWFPQMKEKGVTVPEVFDTDKLFRVEEGGLAPL 241
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig414.10644.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FRM6_ECTSI3.330e-3940.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig414contigH-paniculata_contig414:10820..17234 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-12_002480.1
Exons2
Model size1567
Cds size615
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig414.10644.1prot_H-paniculata_contig414.10644.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig414 11486..12100 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930262.08505-UTR-H-paniculata_contig414:10819..114851622930262.08505-UTR-H-paniculata_contig414:10819..11485Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig414 10820..11485 -
1691481215.248294-UTR-H-paniculata_contig414:10819..114851691481215.248294-UTR-H-paniculata_contig414:10819..11485Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig414 10820..11485 -
1622930262.117213-UTR-H-paniculata_contig414:12100..121851622930262.117213-UTR-H-paniculata_contig414:12100..12185Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig414 12101..12185 -
1691481215.2709646-UTR-H-paniculata_contig414:12100..121851691481215.2709646-UTR-H-paniculata_contig414:12100..12185Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig414 12101..12185 -
1622930262.136616-UTR-H-paniculata_contig414:17033..172341622930262.136616-UTR-H-paniculata_contig414:17033..17234Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig414 17034..17234 -
1691481215.2795656-UTR-H-paniculata_contig414:17033..172341691481215.2795656-UTR-H-paniculata_contig414:17033..17234Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig414 17034..17234 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930262.0996788-CDS-H-paniculata_contig414:11485..121001622930262.0996788-CDS-H-paniculata_contig414:11485..12100Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig414 11486..12100 -
1691481215.2623394-CDS-H-paniculata_contig414:11485..121001691481215.2623394-CDS-H-paniculata_contig414:11485..12100Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig414 11486..12100 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig414.10644.1

>prot_H-paniculata_contig414.10644.1 ID=prot_H-paniculata_contig414.10644.1|Name=mRNA_H-paniculata_contig414.10644.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=205bp
MPADEADVASAELEEEIRDFGRRFARFIITRGFGDADGAGGIDASNTPRA
DERHRVASVDFAQGGIRSALESSAADAEMELRASQRLALQLQADSDAVRF
RVLPSLRENARQLRALFVAIDRLSDHVMPEIEETIAKMEKAMHQMEERRK
EQVETRTWNGSYGLGSPWGAGLWVPPSGDRTVHLPEVYETNKILCVERGG
LAPL*
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mRNA from alignment at H-paniculata_contig414:10820..17234-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig414.10644.1 ID=mRNA_H-paniculata_contig414.10644.1|Name=mRNA_H-paniculata_contig414.10644.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6415bp|location=Sequence derived from alignment at H-paniculata_contig414:10820..17234- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGGCCATGCTCCAATCGACTGGTAAGCACGGTTTCCTTCAGCCCGAATAT
CCTAGCTGCTTGGGTGTGCTCATAGGATAGTGTAGCTGCAGGGTTTGTCG
GGAAAATTACTATCGAGGTCAGCAAAGTTAAGATCTACTAAGCCGGCGAG
GTACAGACTGAAGGGAGGACGGATCACGTAACCGGACTTACCAACTTCCT
GGTAAGAACCGTGCTGCTCTACTGACTAAAATCTCTATCCGCTATACTAT
CCTCAACTGCACACAGGCGCTGTGTGTGCGCGTGTATGTGTGAGAATGTG
GGTTGTATGCGTGTTTCGTATCGAGGTAGCACGGCTGACAGGCTGTAGAG
TACATCGCTTGTTTTGAGCGGTGGCAGAAAGTTGAGCACGGATTTCGCAT
GCGGTAGAATAGATTTGGTGTACGGCGACGGATAAAGAGACAGGACAGAC
ATTACAGTATAGTATAGACAGAAAGTCACTTCTTTAGTTTACAACTAATA
AAGGGAGAGCGGCAGAAGGTCGCGCAGTTTTCCGATTGGTGACTTTTTTT
TAGAGATAATTCTCATAGGTCGGGAGGGGGGGGGGGGGGTAAATGAGCAG
CCACTAGATCACCCGAAAGAGCTGTAGCAGTGATAACCGTTTTACACGCG
TGTGTGGTGTGGTATTTTGCTGTTGTACGTGATGGTACGCAAGCACAGCA
AGGCAACTTATTCCGCATTCTTTTTTTTTAACACCCTCTCGAATAATGAT
AGTTTGCGTTGTCTGTGATGCCAGGTATGGAAAGAACTGTATAGATGCAA
CTCCACGGCCATCGAGAAAATGTATAGCTACCTCTTACAAGAACTTTGGG
TTGACTCCATCAAAACCACCGCACAAATGGCTCGCGCTTATCGAATAAAA
AAATGGAAAGAAATAAGCCTGTAAGCCGATTGTACAAATATCGAAAGTCA
TCTTCCAGTGTTAGTCTGACACAATGATCACGAGATATCTCGTGCTATAC
CTATACAACTTAGCGCATGAGCACATCTCGTGACTACAATCCATTTCATG
TGAAATTGGGCACCTCAAAACAGAAAATGAAGCAGTCCGGGACAAGACGT
GTATCACCTCAAGATCGACCACGGACCTACACCTGAACGGGCAGGGTAGC
TCGTGAACTGAGCATGACTGGAAGTCTAGTCAGAGGCCTTTTAGTAGGTG
AAACTCCTACACCACCTACCTGGTTTAGCCGAACCGGTGTGGCTGGCGCC
CACCCCGCAGAGGAACAAATAACTCTGTTCTGTAACACGAAATGTAGACG
TTCTTCGGTATGGAAGCATCGGATAGAGGTTTTTGCCTTAGCCTTCCACG
GGTTAAAAAAACCCCAAAAAACTCAAGGTCGACGGTTAGTTGAGCTATTT
AGTAGCACAGATTACTTGGAACTGTCGTTGCTACATGTACATGTGCGTGT
AAATATACCATAAAGTGTATCTTCAGGTTACGAAATGAAACAATGAGCGG
ATCGTACTAAACGCAATCTAATAAACGCGGCAGTTACGCCGCACGTGAAT
GCTGCTAGTATTCAAGCTCCCTGTGCCTCCTGGTACACTTGATCTGTTTA
TTCCTGGTAATGCTCGGACAGAAGTCACTGCCCGAGTTGTTTATTTGCTA
TTCGTTTTATGCTTCTAAACAACTACCACCGTAACGGTCAGGCATGCAAG
GTACCTGTGCACTAAAGATGAGTCAAATGTGACACGAGTAATAGTTTTCC
AAATATCGTCGAATTTGTATTAAGTCGTCACTTTAGCTCGTTGAATCAAA
CTGTGTGAAGCATATTGCAATGTGAAGCTCATGATCTGGAGCGCACAGTT
AGCCCTTCACTGCTGTTTTTTCAGCCGTAATGTCAGCGCAGTAGTCTCTC
GTAACACCATACGTACAGCGAGTCTTGCCCAGTAGAGACAATAACTACTA
AAGACAGGTCAAAGACGATGAAGGCAAGATTTTGAAATAAAAATCAAACT
TACATCAGATCGTCACTTTAGCTCTTTGAATCACATTGCGTGAAGCCTTT
TGCAACGTGAAACTTATGGTCTGGAGCAGATGGTTAGTTTTTCAGTTACT
TTGCTACAGACGTAGCGTCAGCGCGGTAGTCGTTCACAATACTTAATTGC
CGATTTGCCGGGGGGTCGGGTCGTAAACACCTAAGCGGATACATCCCCCT
GCCTGAGATCTCCCACAAGAACTCACTCTGCCCCCAAACTTGGGCAGCGC
ATCTAGGGAACACGCTTTATTCAATTTCGTAGTCCTGTATCCTCACTTGG
CGCTATAATTCCTCCTATTGAAACGTGGGTCAACATCGTGGATCACCTGC
AAAAAAACTTTCAAAAAGAGTATATTTGTCATTATCCTGCGTTTTCAAGA
AGGCATCTTCTGGTGCATGAATAAAACCATCTGCTGAGCCCGAACAATGC
GCACCTGATCCAAGTCTTGACAAGTGGATTATGACGATGCGAATAATAAT
TTTGGGGTTCAATTGTTATCCCTTTTAGCGCCTTCTAAGAGGCTATTTCG
GAATAAAACAGACCTTTGACAACAAATATCGAGCGCTGCAATCGTCCTGC
GCAGAACCATGCCAAATATGTGTCTTCGTGCGGTCTGTATTGCACTGTCT
TTCTGAATAGCAGTGGCTCTCCATCCCCCTAAACGTTAGATGGGCAATTG
TTGCTCTGTTTTCGAGGTACGGATTAGGTCATTAGATGAGGATTACATGG
GTTTCGGCGCTACAAGGGCTAACTCCTTCCGAAGTATCCCCTCCCATACC
CGGCGGAAACGTTTCGTTGCTTTTCCGAGAAAAAACGACGAGAGAAACTA
AACATGGTGCACACCGTTATACAGCGAGAGCTGCAAAAGGACAGGCGGGA
GGACGTTCACCCGATTTACCGTAAGCCTCGCTAGGGGTAAAAGTGGGAAG
TGCAACTTTCCCCCCAAAACGCCAGTCCGAACACTAAACGCTGAACGCAT
ATGAATTCGATCGTCAGTCTGTACGTTGAAAACCATACGTCGATTTTATA
GTCAAATTGGGTGTTGCACAAAATGTACCCTAGCCTAAAACAGCAGTGAG
CCTCCAGCCACGCAAACTGTAGACATAACACACACATGGGACACATAACT
CAGCAAGCTCTGCCCGCTTCGGCCCCGCAAGCAAGCGATGACGCCAATAC
CATTGCAGCTCATCTGTAGGCAGTAACCTCAAAAAACGGGTCTTCTCTCG
TCCGACGTATTATTCCCGACTCCGCCGTCAGTAGTAGGCAGTCAGCGTCA
AATAAAATATACTTACCCTAAATTAGTATTGATATTGCAGATAAAAGGTA
CAGACAGCTACAGTATCGAGAGTTTTAAGGTACGACAGCGTTGAACCTAC
ACACAGTACAAGGAGGCAGCACTGACATCTTCACACCTCTGTGTTGCTTG
TAGGGTCGGCCGCCGCATGTAATCTTAAGAGCAGAGACCGCTACGTTGAG
CAGACAACGTACTGCAATTGTTGTTTTCGGGTTTTGTACCTATCAGCGCG
TAGCCTGAGTCTACCAAAGTACGAAGTGCTGTAGTCAAGTGAAGTCGATT
CGATATTGGGCAAGCAACAACAGTTTGCGTGAGAATTTGCGGCCACCTTT
CTACTCAGACTGCTGTTCGACACCGTCTGATTTGTCACTCCGAGCAGGTA
GGTTATGTTGTGACGCATTTCTGTGTATTGCATGCGTTAAAATGCCGAAT
GCTTCAGCCGTGAATGCCCTCTCGGGTGTTTTCTGAGCGTTCCAGGTCTG
AGAAATCATTCAGTCGGTGAAATATAGAGGAAGAAAGAAAATCGCAACCA
CAACCATACCTTGGTCTCCAATCGTCAGTCGCAAATCGCCAGTTTACGTA
CATCCAGTTCCATGAGGGTTCATATTCATAGTAGTAGGAGGGAAATGGAA
TCGTATCCACTATCGTGCAGCTATGCCTTGTGATTTTTGCAACTTATTCC
AACCTTGAATTTCGCGTGTCCAACTATGTCCGATGGAGATTCTTGGATCC
CTCGGGGTCAAGGGTTCATACCTGTCGCGCTGGCCTAAACAACCCGTAGT
GTTTATTGATACGTACGAAGCGGTCGAAAATAGTGGCTGACCGTACATGT
GAAAATTATAATGGCATCATATCCTGAGCCGTCGTTACGCATGCGCAGCA
CGCGTTTTTTGCTCATATGGGCGCCGTTGACGTCGATACGGCGCCGATTT
GAGCTCTGCCAACACACCCTATGCCTAGGGGTGGAAGTCGCGTTTTGGGT
TAGTGCTAGTTCTGGCGTTGGTTCTGCTCGCGTCGGGGTACAACTAAGCA
TCGACCCTAAAAAGAAAGGACTGCAAACAATTGTTTTTGACCTTCGTTTT
GCCTGCTGCAATCAAGTGGGCGTGTTGCACGTATATTTATCGGGTAAGTT
GTGCAACGGAATGTCGCATAACCGCTTCGAGAGTCGACCAGCTCCACTGT
GTTTCACGATCTTGGGTTGGTAAAATTGCACCCCTCGGATAAATACGAAT
ACAGGATACTAATAAATACGAGAAGTCTGGAGTAAATACTCTATCTGTTC
GAGTTCGGGAAGATGTCCATGTGATGCGAATAATATGCTGTGAACTCGAT
ATACTATGGAGCATCGAAAAGCTCGGGTAGATAGAGTATTCAATCTGTAC
AGTATCATCTGTAAAATAAACACCTACATGTGTGACTGTTCGCCGGGTAT
ACGAGCACCCGGTGACCATCCGTAGAGTGACCGTTCATAGACTTGTCATC
GAAATATACCCGTTTACCCAAGACAAATAATGATAGTTCGAGATAGTTGC
GAGTGCTCTATTCGTGTTTGTCTGGGGAGTGTAAAATTGTTGACGAGGAT
TACGTCAGCATTTCCACTCTTATTTTTTTCATATTTGTGGACATGGATTA
GACCTTACACCGACCGTCGGCAGCAAAACTCGCCCAACACTAGTAGTACG
TTACAACCGTGACCTCTTTCCACGCCGCACTCGAACCTCGATACCTCAGG
TTTTGTCGCTGGAAGTTGGCCCAATCCTGCTTTAAGGCGTAGGGAAACGT
TAAAGCGACTGTCGATTACAAAGCGACATTCGCAATGCCTGCTGATGAGG
CGGATGTCGCAAGCGCGGAGCTGGAGGAAGAGATCCGCGATTTTGGTCGT
CGTTTCGCACGGTTCATCATAACGAGGGGATTTGGGGATGCTGATGGAGC
AGGCGGAATTGATGCCAGCAATACTCCGCGAGCAGACGAGAGACATAGGG
TGGCATCCGTAGACTTTGCTCAAGGTGGTATCCGAAGCGCGCTGGAAAGT
TCGGCAGCTGACGCGGAGATGGAACTCAGAGCATCGCAGCGCCTGGCTCT
GCAGCTTCAGGCGGACTCGGACGCCGTTCGCTTTCGAGTATTGCCCAGTC
TGAGGGAGAACGCTCGACAGTTGCGGGCCCTGTTTGTCGCGATCGATAGG
CTTAGCGATCACGTCATGCCGGAGATAGAGGAGACTATCGCAAAGATGGA
GAAGGCCATGCATCAGATGGAGGAGAGGAGAAAGGAACAGGTGGAGACTC
GAACCTGGAATGGGTCGTACGGATTGGGATCTCCCTGGGGGGCTGGCCTG
TGGGTTCCGCCATCAGGCGACAGGACCGTACATCTTCCCGAAGTCTACGA
GACAAACAAAATCCTCTGTGTTGAGAGGGGTGGTTTGGCTCCGCTATGAC
ACCTTTTTGTCTCCTCGTATGATGTTCATGAAGCCTACGCGACCGTACTG
TTGCTAGGGTTTTGTGCCAGCGCGTTCGATTTTGCACCCACTGTATATCC
TGATTGATGATTGGCCTGGCAGTCGTGTATATTGCTCTCACGTAAAGGGA
ATTTTGAACGGCAGTGTTCTGTCTTGCGGTCCTGTGAACAACGTCCGACG
TCTGTATGTTTCCTGTTGAAATTGTTTGATGACGATGTTACCTTGTGGCA
TATGTGCTTTGGGCTGAGGTCTAACGCGGTAGTTAGGTGTTGATCCATCG
GGAGACATTAACGATCTTTGTCTGGTAATGGACGAATTTTTCTTTTGCCA
TGTTTTCTGTCTGCAGCAACGTGTTTCTTCATGTTTGTAAGGTCGGTCGG
GCACACGACGTGTCGTAACGAAGATGGCCGCATCGATACGGCATACTACA
GACACAGTCAGATCTGTGTCACAGGTCATTGTCATGCGCGACAGTTACAT
TTGAATGTCAAAGCTCACCACGGACCTACGCCCGAACGAGTAGGGTAGCT
CGTGAACTGAGCATGACTGTAAGTCTAGTTAGAGGTCTTTTAGTAGGTGA
AACTCCTACACTGCCTACTTGGTTCGGCCGAACCAGGGTGGCGCCTACCC
CGCAGAGGAATAAAC
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Coding sequence (CDS) from alignment at H-paniculata_contig414:10820..17234-

>mRNA_H-paniculata_contig414.10644.1 ID=mRNA_H-paniculata_contig414.10644.1|Name=mRNA_H-paniculata_contig414.10644.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1230bp|location=Sequence derived from alignment at H-paniculata_contig414:10820..17234- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCTGCTGATGAGGCGGATGTCGCAAGCGCGGAGCTGGAGGAAGAGAT
CCGCGATTTTGGTCGTCGTTTCGCACGGTTCATCATAACGAGGGGATTTG
GGGATGCTGATGGAGCAGGCGGAATTGATGCCAGCAATACTCCGCGAGCA
GACGAGAGACATAGGGTGGCATCCGTAGACTTTGCTCAAGGTGGTATCCG
AAGCGCGCTGGAAAGTTCGGCAGCTGACGCGGAGATGGAACTCAGAGCAT
CGCAGCGCCTGGCTCTGCAGCTTCAGGCGGACTCGGACGCCGTTCGCTTT
CGAGTATTGCCCAGTCTGAGGGAGAACGCTCGACAGTTGCGGGCCCTGTT
TGTCGCGATCGATAGGCTTAGCGATCACGTCATGCCGGAGATAGAGGAGA
CTATCGCAAAGATGGAGAAGGCCATGCATCAGATGGAGGAGAGGAGAAAG
GAACAGGTGGAGACTCGAACCTGGAATGGGTCGTACGGATTGGGATCTCC
CTGGGGGGCTGGCCTGTGGGTTCCGCCATCAGGCGACAGGACCGTACATC
TTCCCGAAGTCTACGAGACAAACAAAATCCTCTGTGTTGAGAGGGGTGGT
TTGGCTCCGCTATGAATGCCTGCTGATGAGGCGGATGTCGCAAGCGCGGA
GCTGGAGGAAGAGATCCGCGATTTTGGTCGTCGTTTCGCACGGTTCATCA
TAACGAGGGGATTTGGGGATGCTGATGGAGCAGGCGGAATTGATGCCAGC
AATACTCCGCGAGCAGACGAGAGACATAGGGTGGCATCCGTAGACTTTGC
TCAAGGTGGTATCCGAAGCGCGCTGGAAAGTTCGGCAGCTGACGCGGAGA
TGGAACTCAGAGCATCGCAGCGCCTGGCTCTGCAGCTTCAGGCGGACTCG
GACGCCGTTCGCTTTCGAGTATTGCCCAGTCTGAGGGAGAACGCTCGACA
GTTGCGGGCCCTGTTTGTCGCGATCGATAGGCTTAGCGATCACGTCATGC
CGGAGATAGAGGAGACTATCGCAAAGATGGAGAAGGCCATGCATCAGATG
GAGGAGAGGAGAAAGGAACAGGTGGAGACTCGAACCTGGAATGGGTCGTA
CGGATTGGGATCTCCCTGGGGGGCTGGCCTGTGGGTTCCGCCATCAGGCG
ACAGGACCGTACATCTTCCCGAAGTCTACGAGACAAACAAAATCCTCTGT
GTTGAGAGGGGTGGTTTGGCTCCGCTATGA
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