mRNA_H-paniculata_contig41393.10643.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig41393.10643.1
Unique NamemRNA_H-paniculata_contig41393.10643.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig41393.10643.1 vs. uniprot
Match: W7SYS1_9STRA (Retrovirus-related pol polyprotein from transposon tnt 1-94 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7SYS1_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 1.990e-10
Identity = 30/57 (52.63%), Postives = 37/57 (64.91%), Query Frame = 1 
Query:    1 GVCSACEKGKASKQPVRKYREERTTEPLELVHTDIAGPVDM-SFEGCRFAITFVDDY 168
            GVC  CE+ K +K+       ER  EPLELVHTD+ GPV++ S  G R+AI F DDY
Sbjct:   17 GVCGTCERAKHTKRSFGTKSRERAKEPLELVHTDVLGPVEVESLGGARYAIGFTDDY 73
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BLAST of mRNA_H-paniculata_contig41393.10643.1 vs. uniprot
Match: K8YS61_NANGC (Retrovirus-related pol polyprotein from transposon tnt 1-94 (Fragment) n=2 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YS61_NANGC)

HSP 1 Score: 62.0 bits (149), Expect = 3.670e-10
Identity = 30/57 (52.63%), Postives = 38/57 (66.67%), Query Frame = 1 
Query:    1 GVCSACEKGKASKQPVRKYREERTTEPLELVHTDIAGPVDM-SFEGCRFAITFVDDY 168
            GVC+ CE+ K +K+       ER  EPLELVHTD+ GPV++ S  G R+AI F DDY
Sbjct:   35 GVCATCERAKHTKKSFGTKSRERAKEPLELVHTDVLGPVEVESLGGARYAIGFTDDY 91
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BLAST of mRNA_H-paniculata_contig41393.10643.1 vs. uniprot
Match: W7TGQ6_9STRA (Retrotransposon unclassified n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TGQ6_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 7.250e-10
Identity = 30/57 (52.63%), Postives = 37/57 (64.91%), Query Frame = 1 
Query:    1 GVCSACEKGKASKQPVRKYREERTTEPLELVHTDIAGPVDM-SFEGCRFAITFVDDY 168
            GVC  CE+ K +K+       ER  EPLELVHTD+ GPV++ S  G R+AI F DDY
Sbjct:   55 GVCGTCERAKQTKRSFGTKSRERAKEPLELVHTDVLGPVEVESLGGARYAIGFTDDY 111
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BLAST of mRNA_H-paniculata_contig41393.10643.1 vs. uniprot
Match: W7TIQ5_9STRA (Gag-pol polyprotein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TIQ5_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 8.100e-10
Identity = 30/57 (52.63%), Postives = 37/57 (64.91%), Query Frame = 1 
Query:    1 GVCSACEKGKASKQPVRKYREERTTEPLELVHTDIAGPVDM-SFEGCRFAITFVDDY 168
            GVC  CE+ K +K+       ER  EPLELVHTD+ GPV++ S  G R+AI F DDY
Sbjct:   55 GVCGTCERAKQTKRSFGTKSRERAKEPLELVHTDVLGPVEVESLGGARYAIGFTDDY 111
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BLAST of mRNA_H-paniculata_contig41393.10643.1 vs. uniprot
Match: W7T174_9STRA (Gag-pol polyprotein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T174_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 8.140e-10
Identity = 30/57 (52.63%), Postives = 37/57 (64.91%), Query Frame = 1 
Query:    1 GVCSACEKGKASKQPVRKYREERTTEPLELVHTDIAGPVDM-SFEGCRFAITFVDDY 168
            GVC  CE+ K +K+       ER  EPLELVHTD+ GPV++ S  G R+AI F DDY
Sbjct:  101 GVCGTCERAKQTKKSFGTKSRERAKEPLELVHTDVLGPVEVESLGGARYAIGFTDDY 157
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BLAST of mRNA_H-paniculata_contig41393.10643.1 vs. uniprot
Match: W7T9I7_9STRA (Copia-like retrotransposable element n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T9I7_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 1.110e-9
Identity = 29/57 (50.88%), Postives = 38/57 (66.67%), Query Frame = 1 
Query:    1 GVCSACEKGKASKQPVRKYREERTTEPLELVHTDIAGPVDM-SFEGCRFAITFVDDY 168
            G+C+ CE+ K +K+       ER  EPLELVHTD+ GPV++ S  G R+AI F DDY
Sbjct:  105 GICATCERAKHTKRSFGTKSRERAKEPLELVHTDVLGPVEVESLGGARYAIGFTDDY 161
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BLAST of mRNA_H-paniculata_contig41393.10643.1 vs. uniprot
Match: A0A0A9Y2Q7_LYGHE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9Y2Q7_LYGHE)

HSP 1 Score: 58.9 bits (141), Expect = 9.710e-9
Identity = 26/56 (46.43%), Postives = 40/56 (71.43%), Query Frame = 1 
Query:    4 VCSACEKGKASKQPVRKYREERTTE-PLELVHTDIAGPVDMSFEGCRFAITFVDDY 168
            +C +C KGK S++P  + + +   E PL+LVH+DI GPVD SF G ++ +TF+DD+
Sbjct:  263 LCVSCVKGKQSRKPFPRDKNKTVAENPLDLVHSDILGPVDPSFSGRKYLLTFIDDF 318
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BLAST of mRNA_H-paniculata_contig41393.10643.1 vs. uniprot
Match: A0A146LFV8_LYGHE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=2 Tax=Lygus hesperus TaxID=30085 RepID=A0A146LFV8_LYGHE)

HSP 1 Score: 58.9 bits (141), Expect = 9.920e-9
Identity = 26/56 (46.43%), Postives = 40/56 (71.43%), Query Frame = 1 
Query:    4 VCSACEKGKASKQPVRKYREERTTE-PLELVHTDIAGPVDMSFEGCRFAITFVDDY 168
            +C +C KGK S++P  + + +   E PL+LVH+DI GPVD SF G ++ +TF+DD+
Sbjct:  449 LCVSCVKGKQSRKPFPRDKNKTVAENPLDLVHSDILGPVDPSFSGRKYLLTFIDDF 504
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BLAST of mRNA_H-paniculata_contig41393.10643.1 vs. uniprot
Match: A0A151I891_9HYME (Copia protein n=1 Tax=Cyphomyrmex costatus TaxID=456900 RepID=A0A151I891_9HYME)

HSP 1 Score: 58.5 bits (140), Expect = 1.100e-8
Identity = 26/57 (45.61%), Postives = 36/57 (63.16%), Query Frame = 1 
Query:    1 GVCSACEKGKASKQPVRKYREERTTEPLELVHTDIAGPVDMSFEGC-RFAITFVDDY 168
            GVC  C KGK ++QP  K    +T EPL+L+HTD+ GP+     G  R+ +T +DDY
Sbjct:   43 GVCKTCVKGKMTRQPFPKMSFSKTQEPLDLIHTDVCGPMQTKTPGNKRYILTLIDDY 99
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BLAST of mRNA_H-paniculata_contig41393.10643.1 vs. uniprot
Match: UPI001036ED44 (uncharacterized protein LOC114311064 n=1 Tax=Camellia sinensis TaxID=4442 RepID=UPI001036ED44)

HSP 1 Score: 58.2 bits (139), Expect = 1.840e-8
Identity = 30/56 (53.57%), Postives = 38/56 (67.86%), Query Frame = 1 
Query:    4 VCSACEKGKASKQPVRKYREERTTEPLELVHTDIAGPVDM-SFEGCRFAITFVDDY 168
            VC  C KGK +K  ++KY   RTT+ LEL+HTDI GP  M S+ G  + ITF+DDY
Sbjct:  349 VCVECIKGKQTK--IKKYGAHRTTDVLELIHTDICGPFPMASWNGQHYFITFIDDY 402
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig41393.10643.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
W7SYS1_9STRA1.990e-1052.63Retrovirus-related pol polyprotein from transposon... [more]
K8YS61_NANGC3.670e-1052.63Retrovirus-related pol polyprotein from transposon... [more]
W7TGQ6_9STRA7.250e-1052.63Retrotransposon unclassified n=1 Tax=Nannochlorops... [more]
W7TIQ5_9STRA8.100e-1052.63Gag-pol polyprotein n=1 Tax=Nannochloropsis gadita... [more]
W7T174_9STRA8.140e-1052.63Gag-pol polyprotein n=2 Tax=Nannochloropsis gadita... [more]
W7T9I7_9STRA1.110e-950.88Copia-like retrotransposable element n=1 Tax=Nanno... [more]
A0A0A9Y2Q7_LYGHE9.710e-946.43Retrovirus-related Pol polyprotein from transposon... [more]
A0A146LFV8_LYGHE9.920e-946.43Retrovirus-related Pol polyprotein from transposon... [more]
A0A151I891_9HYME1.100e-845.61Copia protein n=1 Tax=Cyphomyrmex costatus TaxID=4... [more]
UPI001036ED441.840e-853.57uncharacterized protein LOC114311064 n=1 Tax=Camel... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig41393contigH-paniculata_contig41393:947..1114 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size168
Cds size168
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930262.0333314-CDS-H-paniculata_contig41393:946..11141622930262.0333314-CDS-H-paniculata_contig41393:946..1114Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig41393 947..1114 -
1691481215.2324684-CDS-H-paniculata_contig41393:946..11141691481215.2324684-CDS-H-paniculata_contig41393:946..1114Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig41393 947..1114 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig41393.10643.1prot_H-paniculata_contig41393.10643.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig41393 947..1114 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig41393.10643.1

>prot_H-paniculata_contig41393.10643.1 ID=prot_H-paniculata_contig41393.10643.1|Name=mRNA_H-paniculata_contig41393.10643.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=56bp
GVCSACEKGKASKQPVRKYREERTTEPLELVHTDIAGPVDMSFEGCRFAI
TFVDDY
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mRNA from alignment at H-paniculata_contig41393:947..1114-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig41393.10643.1 ID=mRNA_H-paniculata_contig41393.10643.1|Name=mRNA_H-paniculata_contig41393.10643.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=168bp|location=Sequence derived from alignment at H-paniculata_contig41393:947..1114- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGCGTCTGCTCGGCATGTGAGAAGGGGAAAGCGTCGAAGCAGCCTGTAAG
AAAGTATCGAGAAGAGCGGACAACCGAGCCGTTGGAGCTGGTGCACACCG
ACATAGCCGGACCGGTGGACATGTCCTTTGAAGGATGTCGCTTCGCCATC
ACCTTCGTCGACGACTAC
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Coding sequence (CDS) from alignment at H-paniculata_contig41393:947..1114-

>mRNA_H-paniculata_contig41393.10643.1 ID=mRNA_H-paniculata_contig41393.10643.1|Name=mRNA_H-paniculata_contig41393.10643.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=336bp|location=Sequence derived from alignment at H-paniculata_contig41393:947..1114- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGCGTCTGCTCGGCATGTGAGAAGGGGAAAGCGTCGAAGCAGCCTGTAAG
AAAGTATCGAGAAGAGCGGACAACCGAGCCGTTGGAGCTGGTGCACACCG
ACATAGCCGGACCGGTGGACATGTCCTTTGAAGGATGTCGCTTCGCCATC
ACCTTCGTCGACGACTACGGCGTCTGCTCGGCATGTGAGAAGGGGAAAGC
GTCGAAGCAGCCTGTAAGAAAGTATCGAGAAGAGCGGACAACCGAGCCGT
TGGAGCTGGTGCACACCGACATAGCCGGACCGGTGGACATGTCCTTTGAA
GGATGTCGCTTCGCCATCACCTTCGTCGACGACTAC
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