mRNA_H-paniculata_contig4139.10642.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4139.10642.1
Unique NamemRNA_H-paniculata_contig4139.10642.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig4139.10642.1 vs. uniprot
Match: A0A5K1JZW2_9APHY (Cell pattern formation-associated protein MSTU1 (Stunted protein A) (Fragment) n=2 Tax=Ganoderma TaxID=5314 RepID=A0A5K1JZW2_9APHY)

HSP 1 Score: 52.0 bits (123), Expect = 5.390e-5
Identity = 44/151 (29.14%), Postives = 69/151 (45.70%), Query Frame = 1 
Query:   34 EAWRKLQKHYRASGLKEKSRLLREFNSPRMEPEEEPTKFFLRVDRVANDLERLGRTVDEDDRNLAIVNGLSPEYDTKKRMVESSDDTP----TRARIETIVANQYSR---LQPQKGEAAAKALAVSMNGKSE----TCQLCHKLGHAAPQC 453
            E W +L++ + A G   +    R        P++  T +   V R A  L+ +G ++D++DR LA+ NGL   Y    ++V + D TP    T   + T + N+ SR   L    G +   ALA +M  ++     TC  C K GH    C
Sbjct:   67 EVWSELRRVHLARGFGTRLAHRRALWRMSKRPDQSMTSYIADVRRAAFRLQEIGASIDDEDRILALTNGLPDSY---SQLVVNLDSTPPSDLTLDYVITRLLNEESRQLSLASAPGTSYDTALAATMKPRTPLERITCFKCSKKGHYQRDC 214
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BLAST of mRNA_H-paniculata_contig4139.10642.1 vs. uniprot
Match: UPI002010774D (uncharacterized protein LOC125228091 n=2 Tax=Leguminivora glycinivorella TaxID=1035111 RepID=UPI002010774D)

HSP 1 Score: 51.6 bits (122), Expect = 9.930e-5
Identity = 35/143 (24.48%), Postives = 65/143 (45.45%), Query Frame = 1 
Query:   25 SPSEAWRKLQKHYRASGLKEKSRLLREFNSPRMEPEEEPTKFFLRVDRVANDLERLGRTVDEDDRNLAIVNGLSPEYDTKKRMVESSDDTPTRARIETIVANQYSRLQPQKGEAAAKALAVSMNGKSETCQLCHKLGHAAPQC 453
            +P++AW KL+  +   GL  +  LLR+ +  +         +   +  +   LE +GRT+++ +    +++GL  EYDT    V SS  T    +       +   LQ    +++ ++ A  +  K  TC  C + GH   +C
Sbjct:   82 TPADAWSKLKDAFEDKGLYRRVLLLRKLHRIQFSEHSSMASYIDSIITIVQQLEDIGRTIEDAEVAEILLSGLPAEYDT----VVSSLSTAAVGQTVKSEVIKSRLLQEFSRKSSIESTAAFVTKKQVTCDFCKRQGHTKARC 220
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4139.10642.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A5K1JZW2_9APHY5.390e-529.14Cell pattern formation-associated protein MSTU1 (S... [more]
UPI002010774D9.930e-524.48uncharacterized protein LOC125228091 n=2 Tax=Legum... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4139contigH-paniculata_contig4139:7373..7840 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size468
Cds size468
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930261.9871485-CDS-H-paniculata_contig4139:7372..78401622930261.9871485-CDS-H-paniculata_contig4139:7372..7840Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4139 7373..7840 +
1691481215.2227154-CDS-H-paniculata_contig4139:7372..78401691481215.2227154-CDS-H-paniculata_contig4139:7372..7840Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4139 7373..7840 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4139.10642.1prot_H-paniculata_contig4139.10642.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4139 7373..7840 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4139.10642.1

>prot_H-paniculata_contig4139.10642.1 ID=prot_H-paniculata_contig4139.10642.1|Name=mRNA_H-paniculata_contig4139.10642.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=156bp
LKIFPSTKSPSEAWRKLQKHYRASGLKEKSRLLREFNSPRMEPEEEPTKF
FLRVDRVANDLERLGRTVDEDDRNLAIVNGLSPEYDTKKRMVESSDDTPT
RARIETIVANQYSRLQPQKGEAAAKALAVSMNGKSETCQLCHKLGHAAPQ
CRGDRR
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mRNA from alignment at H-paniculata_contig4139:7373..7840+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4139.10642.1 ID=mRNA_H-paniculata_contig4139.10642.1|Name=mRNA_H-paniculata_contig4139.10642.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=468bp|location=Sequence derived from alignment at H-paniculata_contig4139:7373..7840+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGAAGATCTTCCCGAGCACCAAGTCGCCGAGTGAGGCATGGAGGAAGCT
CCAAAAGCATTACCGAGCCAGCGGCCTGAAAGAGAAGTCACGTCTGCTGC
GCGAATTTAACTCCCCAAGGATGGAGCCCGAGGAAGAACCCACAAAATTC
TTTTTGCGGGTGGACCGGGTCGCCAATGACTTGGAGCGGCTTGGGAGGAC
CGTCGACGAAGATGACAGGAATCTGGCGATAGTGAACGGGCTGTCACCAG
AGTATGACACTAAGAAGAGAATGGTCGAGAGCAGCGATGACACGCCAACT
AGAGCACGCATCGAAACGATCGTCGCAAACCAGTATAGCAGGCTTCAGCC
GCAAAAAGGCGAGGCCGCGGCAAAGGCACTGGCTGTCTCGATGAATGGTA
AATCGGAAACTTGCCAGTTGTGCCACAAGCTTGGACACGCAGCACCTCAA
TGCAGGGGGGATCGAAGG
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Coding sequence (CDS) from alignment at H-paniculata_contig4139:7373..7840+

>mRNA_H-paniculata_contig4139.10642.1 ID=mRNA_H-paniculata_contig4139.10642.1|Name=mRNA_H-paniculata_contig4139.10642.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=936bp|location=Sequence derived from alignment at H-paniculata_contig4139:7373..7840+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGAAGATCTTCCCGAGCACCAAGTCGCCGAGTGAGGCATGGAGGAAGCT
CCAAAAGCATTACCGAGCCAGCGGCCTGAAAGAGAAGTCACGTCTGCTGC
GCGAATTTAACTCCCCAAGGATGGAGCCCGAGGAAGAACCCACAAAATTC
TTTTTGCGGGTGGACCGGGTCGCCAATGACTTGGAGCGGCTTGGGAGGAC
CGTCGACGAAGATGACAGGAATCTGGCGATAGTGAACGGGCTGTCACCAG
AGTATGACACTAAGAAGAGAATGGTCGAGAGCAGCGATGACACGCCAACT
AGAGCACGCATCGAAACGATCGTCGCAAACCAGTATAGCAGGCTTCAGCC
GCAAAAAGGCGAGGCCGCGGCAAAGGCACTGGCTGTCTCGATGAATGGTA
AATCGGAAACTTGCCAGTTGTGCCACAAGCTTGGACACGCAGCACCTCAA
TGCAGGGGGGATCGAAGGCTGAAGATCTTCCCGAGCACCAAGTCGCCGAG
TGAGGCATGGAGGAAGCTCCAAAAGCATTACCGAGCCAGCGGCCTGAAAG
AGAAGTCACGTCTGCTGCGCGAATTTAACTCCCCAAGGATGGAGCCCGAG
GAAGAACCCACAAAATTCTTTTTGCGGGTGGACCGGGTCGCCAATGACTT
GGAGCGGCTTGGGAGGACCGTCGACGAAGATGACAGGAATCTGGCGATAG
TGAACGGGCTGTCACCAGAGTATGACACTAAGAAGAGAATGGTCGAGAGC
AGCGATGACACGCCAACTAGAGCACGCATCGAAACGATCGTCGCAAACCA
GTATAGCAGGCTTCAGCCGCAAAAAGGCGAGGCCGCGGCAAAGGCACTGG
CTGTCTCGATGAATGGTAAATCGGAAACTTGCCAGTTGTGCCACAAGCTT
GGACACGCAGCACCTCAATGCAGGGGGGATCGAAGG
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