mRNA_H-paniculata_contig41302.10627.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig41302.10627.1
Unique NamemRNA_H-paniculata_contig41302.10627.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig41302.10627.1 vs. uniprot
Match: A0A8F0JYE6_9PHAE (Cytochrome c6 n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0JYE6_9PHAE)

HSP 1 Score: 186 bits (473), Expect = 2.150e-59
Identity = 91/109 (83.49%), Postives = 99/109 (90.83%), Query Frame = 1
Query:    1 MKNLYLSLFITCLTITNFSTSASAVDIMNGESIFNANCSACHSGGNNVIMPEKTLRKEALSENNMNTASAITYQVTNGKNAMPAFGGRLTDEDIADVANFVLSRSEKGW 327
            MKNLYLSLFITCL +TNFSTSASAVDI NGE+IF ANCSACH+GGNN IMP+KTL+K+ALS N MN+ SAITYQVTNGKNAMPAFGGRL D DI DVANFVLS+SEKGW
Sbjct:    1 MKNLYLSLFITCLAVTNFSTSASAVDINNGENIFTANCSACHAGGNNAIMPDKTLKKDALSGNQMNSVSAITYQVTNGKNAMPAFGGRLGDTDIEDVANFVLSQSEKGW 109          
BLAST of mRNA_H-paniculata_contig41302.10627.1 vs. uniprot
Match: A0A6B7EVB8_9PHAE (Cytochrome c6 n=3 Tax=Ectocarpales TaxID=2877 RepID=A0A6B7EVB8_9PHAE)

HSP 1 Score: 169 bits (428), Expect = 1.510e-52
Identity = 80/109 (73.39%), Postives = 93/109 (85.32%), Query Frame = 1
Query:    1 MKNLYLSLFITCLTITNFSTSASAVDIMNGESIFNANCSACHSGGNNVIMPEKTLRKEALSENNMNTASAITYQVTNGKNAMPAFGGRLTDEDIADVANFVLSRSEKGW 327
            MKN +L  FI+CL + +F   A AVDI NGES+F ANCSACH+GGNNVIMPEKTL+K+AL  N MN+ +AITYQVTNGKNAMPAFGGRL++EDI DVANFVLS+SEKGW
Sbjct:    1 MKNFFLGFFISCLAMISFYNPAEAVDINNGESVFTANCSACHAGGNNVIMPEKTLKKDALGTNQMNSVNAITYQVTNGKNAMPAFGGRLSEEDIQDVANFVLSQSEKGW 109          
BLAST of mRNA_H-paniculata_contig41302.10627.1 vs. uniprot
Match: A0A6G6D7E1_ECTSI (Cytochrome c6 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=A0A6G6D7E1_ECTSI)

HSP 1 Score: 169 bits (428), Expect = 1.560e-52
Identity = 81/109 (74.31%), Postives = 93/109 (85.32%), Query Frame = 1
Query:    1 MKNLYLSLFITCLTITNFSTSASAVDIMNGESIFNANCSACHSGGNNVIMPEKTLRKEALSENNMNTASAITYQVTNGKNAMPAFGGRLTDEDIADVANFVLSRSEKGW 327
            MKN +L  FI+CL + +F  SA AVDI NGES+F ANCSACH+GGNNVIMPEKTLRKEAL  NNMN+ +AITYQVTNGKNAMPAFGGRL++ DI DVANFVLS++E GW
Sbjct:    1 MKNFFLGFFISCLALISFYNSAEAVDINNGESVFVANCSACHAGGNNVIMPEKTLRKEALGANNMNSVNAITYQVTNGKNAMPAFGGRLSEPDIEDVANFVLSKAEGGW 109          
BLAST of mRNA_H-paniculata_contig41302.10627.1 vs. uniprot
Match: A0A8E5XRM0_9PHAE (Cytochrome c6 n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E5XRM0_9PHAE)

HSP 1 Score: 167 bits (422), Expect = 1.280e-51
Identity = 82/109 (75.23%), Postives = 89/109 (81.65%), Query Frame = 1
Query:    1 MKNLYLSLFITCLTITNFSTSASAVDIMNGESIFNANCSACHSGGNNVIMPEKTLRKEALSENNMNTASAITYQVTNGKNAMPAFGGRLTDEDIADVANFVLSRSEKGW 327
            MKN   +L I CL I +FST    VDI NGES+F ANCSACH+GGNNVIMPEKTL+K+ALS N MNT SAITYQVTNGKNAMPAFGGRL D DI DVANFVLS+SEK W
Sbjct:    1 MKNFLFTLLIGCLMIISFSTPTQGVDINNGESVFTANCSACHAGGNNVIMPEKTLKKDALSTNQMNTVSAITYQVTNGKNAMPAFGGRLADTDIEDVANFVLSQSEKDW 109          
BLAST of mRNA_H-paniculata_contig41302.10627.1 vs. uniprot
Match: A0A0S0GBE4_COSCS (Cytochrome c6 n=20 Tax=Laminariales TaxID=2886 RepID=A0A0S0GBE4_COSCS)

HSP 1 Score: 164 bits (416), Expect = 1.050e-50
Identity = 77/109 (70.64%), Postives = 90/109 (82.57%), Query Frame = 1
Query:    1 MKNLYLSLFITCLTITNFSTSASAVDIMNGESIFNANCSACHSGGNNVIMPEKTLRKEALSENNMNTASAITYQVTNGKNAMPAFGGRLTDEDIADVANFVLSRSEKGW 327
            MKN +   FI CL + +F   A AVDI NGE++F ANCSACH+GGNNVIMPEKTL+KEALS+N M++ SAITYQVTNGKNAMPAFGGRL + DI DVANFVLS+S+K W
Sbjct:    1 MKNFFFGFFIACLALISFQNPAQAVDINNGENVFTANCSACHAGGNNVIMPEKTLKKEALSQNKMDSVSAITYQVTNGKNAMPAFGGRLAESDIEDVANFVLSQSDKNW 109          
BLAST of mRNA_H-paniculata_contig41302.10627.1 vs. uniprot
Match: A0A5A4MJ73_9PHAE (Cytochrome c6 n=5 Tax=Scytosiphonaceae TaxID=2891 RepID=A0A5A4MJ73_9PHAE)

HSP 1 Score: 164 bits (414), Expect = 2.120e-50
Identity = 78/109 (71.56%), Postives = 90/109 (82.57%), Query Frame = 1
Query:    1 MKNLYLSLFITCLTITNFSTSASAVDIMNGESIFNANCSACHSGGNNVIMPEKTLRKEALSENNMNTASAITYQVTNGKNAMPAFGGRLTDEDIADVANFVLSRSEKGW 327
            MKN +L  FI+CLT+ +F   A AVDI NGES+F ANCSACH+GGNNVIMPEKTL+K AL EN M +  AITYQVTNGKNAMPAFGGRL++ DI DVANFVLS+S+K W
Sbjct:    1 MKNFFLGFFISCLTLISFYNPAEAVDINNGESVFTANCSACHAGGNNVIMPEKTLKKGALEENQMGSVKAITYQVTNGKNAMPAFGGRLSESDIEDVANFVLSQSDKDW 109          
BLAST of mRNA_H-paniculata_contig41302.10627.1 vs. uniprot
Match: A0A8F0JZT7_9PHAE (Cytochrome c6 n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0JZT7_9PHAE)

HSP 1 Score: 163 bits (412), Expect = 4.290e-50
Identity = 77/109 (70.64%), Postives = 91/109 (83.49%), Query Frame = 1
Query:    1 MKNLYLSLFITCLTITNFSTSASAVDIMNGESIFNANCSACHSGGNNVIMPEKTLRKEALSENNMNTASAITYQVTNGKNAMPAFGGRLTDEDIADVANFVLSRSEKGW 327
            MKN +   FI  LT+T+F T A AVD+ +GE+IF ANCSACH+GGNNVIMPEKTL+KEAL+ N MN+ +AITYQVTNGKNAMPAFGGRLTD DI+DVANFVL +S+  W
Sbjct:    1 MKNFFFGFFIASLTLTSFYTPAEAVDLTHGENIFTANCSACHAGGNNVIMPEKTLKKEALANNEMNSVNAITYQVTNGKNAMPAFGGRLTDADISDVANFVLGQSDSDW 109          
BLAST of mRNA_H-paniculata_contig41302.10627.1 vs. uniprot
Match: A0A8E8U4P1_9PHAE (Cytochrome c6 n=3 Tax=Alaria TaxID=2888 RepID=A0A8E8U4P1_9PHAE)

HSP 1 Score: 161 bits (408), Expect = 1.740e-49
Identity = 74/109 (67.89%), Postives = 89/109 (81.65%), Query Frame = 1
Query:    1 MKNLYLSLFITCLTITNFSTSASAVDIMNGESIFNANCSACHSGGNNVIMPEKTLRKEALSENNMNTASAITYQVTNGKNAMPAFGGRLTDEDIADVANFVLSRSEKGW 327
            MKN +   FI CL + +F   A A+DI NGE+IF ANCSACH+GGNNVIMPEKTL+K+AL++N MNT  AITYQVTNGKNAMPAFG RL + DI DVANFV+++S+KGW
Sbjct:    1 MKNFFFGFFIACLALISFQNPAQAIDINNGENIFTANCSACHAGGNNVIMPEKTLKKDALADNKMNTIGAITYQVTNGKNAMPAFGSRLAETDIEDVANFVITQSDKGW 109          
BLAST of mRNA_H-paniculata_contig41302.10627.1 vs. uniprot
Match: A0A8F0F6Q3_AKKLU (Cytochrome c6 n=1 Tax=Akkesiphycus lubricus TaxID=3022 RepID=A0A8F0F6Q3_AKKLU)

HSP 1 Score: 160 bits (405), Expect = 5.000e-49
Identity = 76/109 (69.72%), Postives = 89/109 (81.65%), Query Frame = 1
Query:    1 MKNLYLSLFITCLTITNFSTSASAVDIMNGESIFNANCSACHSGGNNVIMPEKTLRKEALSENNMNTASAITYQVTNGKNAMPAFGGRLTDEDIADVANFVLSRSEKGW 327
            MK  +   FI CLT+ +    A AVDI NGE+IF ANCSACH+GGNNVIMPEKTL+K AL EN+MN+  AITYQVTNGKNAMPAFGGRL+++DI DVANFVL++S KGW
Sbjct:    1 MKKFFFGFFIACLTLISSHNPAQAVDINNGENIFTANCSACHAGGNNVIMPEKTLKKNALEENSMNSVGAITYQVTNGKNAMPAFGGRLSEDDIEDVANFVLAQSGKGW 109          
BLAST of mRNA_H-paniculata_contig41302.10627.1 vs. uniprot
Match: A0A2R4QPS7_9PHAE (Cytochrome c6 n=3 Tax=Fucaceae TaxID=3010 RepID=A0A2R4QPS7_9PHAE)

HSP 1 Score: 160 bits (404), Expect = 7.100e-49
Identity = 77/109 (70.64%), Postives = 92/109 (84.40%), Query Frame = 1
Query:    1 MKNLYLSLFITCLTITNFSTSASAVDIMNGESIFNANCSACHSGGNNVIMPEKTLRKEALSENNMNTASAITYQVTNGKNAMPAFGGRLTDEDIADVANFVLSRSEKGW 327
            MK  +  LFI  LT+ +F TS  AVDI +GE++F ANCSACH+GGNNVIMPEKTL+K+ALS N M++ SAITYQVTNGKNAMPAFGGRL+D+DI DVA+FVLS+SEK W
Sbjct:    1 MKKFFFGLFIPYLTLISFYTSVQAVDINHGENVFTANCSACHAGGNNVIMPEKTLKKDALSTNQMDSVSAITYQVTNGKNAMPAFGGRLSDDDIEDVASFVLSQSEKDW 109          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig41302.10627.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8F0JYE6_9PHAE2.150e-5983.49Cytochrome c6 n=1 Tax=Protohalopteris sp. TaxID=28... [more]
A0A6B7EVB8_9PHAE1.510e-5273.39Cytochrome c6 n=3 Tax=Ectocarpales TaxID=2877 RepI... [more]
A0A6G6D7E1_ECTSI1.560e-5274.31Cytochrome c6 n=1 Tax=Ectocarpus siliculosus TaxID... [more]
A0A8E5XRM0_9PHAE1.280e-5175.23Cytochrome c6 n=1 Tax=Ishige okamurae TaxID=233772... [more]
A0A0S0GBE4_COSCS1.050e-5070.64Cytochrome c6 n=20 Tax=Laminariales TaxID=2886 Rep... [more]
A0A5A4MJ73_9PHAE2.120e-5071.56Cytochrome c6 n=5 Tax=Scytosiphonaceae TaxID=2891 ... [more]
A0A8F0JZT7_9PHAE4.290e-5070.64Cytochrome c6 n=1 Tax=Desmarestia aculeata TaxID=6... [more]
A0A8E8U4P1_9PHAE1.740e-4967.89Cytochrome c6 n=3 Tax=Alaria TaxID=2888 RepID=A0A8... [more]
A0A8F0F6Q3_AKKLU5.000e-4969.72Cytochrome c6 n=1 Tax=Akkesiphycus lubricus TaxID=... [more]
A0A2R4QPS7_9PHAE7.100e-4970.64Cytochrome c6 n=3 Tax=Fucaceae TaxID=3010 RepID=A0... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig41302contigH-paniculata_contig41302:772..1101 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score165.2
Seed ortholog evalue1.7e-38
Seed eggNOG ortholog2880.D1J772
Preferred namepetJ
KEGG koko:K08906
KEGG Pathwayko00195,map00195
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.Cytochrome C oxidase, cbb3-type, subunit III
EggNOG OGs2SB8G@2759,COG2010@1
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00194
Exons1
Model size330
Cds size330
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930259.90909-CDS-H-paniculata_contig41302:771..11011622930259.90909-CDS-H-paniculata_contig41302:771..1101Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig41302 772..1101 -
1691481214.372277-CDS-H-paniculata_contig41302:771..11011691481214.372277-CDS-H-paniculata_contig41302:771..1101Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig41302 772..1101 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig41302.10627.1prot_H-paniculata_contig41302.10627.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig41302 772..1101 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig41302.10627.1

>prot_H-paniculata_contig41302.10627.1 ID=prot_H-paniculata_contig41302.10627.1|Name=mRNA_H-paniculata_contig41302.10627.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=110bp
MKNLYLSLFITCLTITNFSTSASAVDIMNGESIFNANCSACHSGGNNVIM
PEKTLRKEALSENNMNTASAITYQVTNGKNAMPAFGGRLTDEDIADVANF
VLSRSEKGW*
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mRNA from alignment at H-paniculata_contig41302:772..1101-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig41302.10627.1 ID=mRNA_H-paniculata_contig41302.10627.1|Name=mRNA_H-paniculata_contig41302.10627.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=330bp|location=Sequence derived from alignment at H-paniculata_contig41302:772..1101- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAAAATCTTTATCTTAGTTTATTCATTACTTGTTTAACAATAACTAA TTTCTCTACTTCTGCTTCTGCTGTGGATATTATGAATGGGGAAAGTATTT TTAATGCAAATTGTTCAGCGTGTCATTCTGGTGGTAATAATGTTATTATG CCTGAAAAAACTTTAAGAAAAGAAGCTTTATCTGAAAATAATATGAATAC CGCTAGTGCCATTACTTACCAAGTAACGAATGGTAAAAATGCTATGCCTG CTTTTGGTGGACGATTAACAGATGAAGATATTGCAGATGTGGCTAATTTT GTTTTATCTCGATCAGAGAAAGGTTGGTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig41302:772..1101-

>mRNA_H-paniculata_contig41302.10627.1 ID=mRNA_H-paniculata_contig41302.10627.1|Name=mRNA_H-paniculata_contig41302.10627.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=660bp|location=Sequence derived from alignment at H-paniculata_contig41302:772..1101- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAAAATCTTTATCTTAGTTTATTCATTACTTGTTTAACAATAACTAA
TTTCTCTACTTCTGCTTCTGCTGTGGATATTATGAATGGGGAAAGTATTT
TTAATGCAAATTGTTCAGCGTGTCATTCTGGTGGTAATAATGTTATTATG
CCTGAAAAAACTTTAAGAAAAGAAGCTTTATCTGAAAATAATATGAATAC
CGCTAGTGCCATTACTTACCAAGTAACGAATGGTAAAAATGCTATGCCTG
CTTTTGGTGGACGATTAACAGATGAAGATATTGCAGATGTGGCTAATTTT
GTTTTATCTCGATCAGAGAAAGGTTGGTAAATGAAAAATCTTTATCTTAG
TTTATTCATTACTTGTTTAACAATAACTAATTTCTCTACTTCTGCTTCTG
CTGTGGATATTATGAATGGGGAAAGTATTTTTAATGCAAATTGTTCAGCG
TGTCATTCTGGTGGTAATAATGTTATTATGCCTGAAAAAACTTTAAGAAA
AGAAGCTTTATCTGAAAATAATATGAATACCGCTAGTGCCATTACTTACC
AAGTAACGAATGGTAAAAATGCTATGCCTGCTTTTGGTGGACGATTAACA
GATGAAGATATTGCAGATGTGGCTAATTTTGTTTTATCTCGATCAGAGAA
AGGTTGGTAA
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