mRNA_H-paniculata_contig41294.10625.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig41294.10625.1
Unique NamemRNA_H-paniculata_contig41294.10625.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig41294.10625.1 vs. uniprot
Match: A0A445HPU2_GLYSO (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Glycine soja TaxID=3848 RepID=A0A445HPU2_GLYSO)

HSP 1 Score: 177 bits (450), Expect = 4.630e-47
Identity = 105/263 (39.92%), Postives = 163/263 (61.98%), Query Frame = 1
Query:    1 LFKRKLKEDGSVACYKARLVDQGSSQVEDEDFFETSAPVARMSSLRAVFSLTAEHDFELEGIELDEAYLNAPVEEELFVKLPPEF-SPFSRNIPFVRRLCKSLYGLKQSGGN*NNILDDFLSGEGLSCSTIDPCLYFSRGDGREKNLLVAVYVDDLVIAGR-REKVDEFKHNISQRFRMKDLGSLSRMLGIEARRDRSNGTITISQGSYIREVVKRYGFDECRGVPTPVEGNVKDSAPERKTTSNSTEYRGMVGSLMYASIGT 783
            +F+RK+K DG+V  YKARLV QG  Q E  DFF+T APVAR+S++R + +L A H+  +  +++  A+LN  ++EE+++K P  F  P + N   V +L KSLYGLKQ+    +   D+ +   G   +  D CLY S+ D   K +++ +YVDD++I G  +++VDE K  +S +F MKD+G    +LGI+ +R   N  I+ISQ  YI ++++++ F +C  V TP++ N+K   P +    +  EY   +GSLMYA I T
Sbjct:  587 IFRRKMKVDGTVDKYKARLVIQGFRQKEGIDFFDTYAPVARISTIRLLLALAAIHNLMIHQMDVKTAFLNGELDEEIYMKQPEGFVMPGNENK--VCKLMKSLYGLKQAPKQWHQKFDEVVLSSGFVINQADKCLY-SKFDTHGKGVIICLYVDDMLIFGTDQDQVDETKAFLSSKFDMKDMGEADVILGIKIKR--GNNGISISQSHYIEKILEKFNFKDCSPVSTPIDPNLK-LLPNKGVAVSQLEYSRAIGSLMYAMIST 843          
BLAST of mRNA_H-paniculata_contig41294.10625.1 vs. uniprot
Match: A0A146H3U8_MYCCL (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Mycena chlorophos TaxID=658473 RepID=A0A146H3U8_MYCCL)

HSP 1 Score: 172 bits (436), Expect = 5.910e-47
Identity = 109/268 (40.67%), Postives = 158/268 (58.96%), Query Frame = 1
Query:    4 FKRKLKEDGSVACYKARLVDQGSSQVEDEDFFETSAPVARMSSLRAVFSLTAEHDFELEGIELDEAYLNAPVEEELFVKLPPEFSPFSRNIPFVRRLCKSLYGLKQSGGN*NNILDDFLSGEGLSCSTIDPCLYFSRGDGREKNLLVAVYVDDLVI-AGRREKVDEFKHNISQRFRMKDLGSLSRMLGIEARRDRSNGTITISQGSYIREVVKRYGFDECRGVPTPV--EGNVK-----DSAPERKTTSNSTEYRGMVGSLMYASIGT 783
            + +K  E+G VA  KARLV  G+SQ+   D+ ET APV R+ SLRA  +L A  + E+  +++  AYLN  ++EE+F++ PP F   +     V RL KSLYGL QSG   N   D  +   GL+ +  D C+Y+   DG  + + V V+VDDL+I A  +++ +  K  +   F MKDLG   +++GIE  RDRS GT+T+SQ  YI  ++ RYGF +  GV TP+  + N K       AP    ++ + EY+ M+G LMYA+I T
Sbjct:   26 YVKKSDENGLVARLKARLVALGNSQIPGIDYTETYAPVVRLESLRAAIALAAIENLEMIQMDIRGAYLNGELKEEVFMQQPPGFEDGTGR---VWRLKKSLYGLHQSGREWNREFDQKVQTIGLTKTAADNCVYYRERDG--ERVWVTVWVDDLIILATSKDEGERVKKELDTLFEMKDLGEPRKIIGIEVTRDRSAGTVTLSQRHYIESLLDRYGFSDLNGVSTPLVPDANTKMRQLPKDAPPTAPSARA-EYQSMIGGLMYAAICT 287          
BLAST of mRNA_H-paniculata_contig41294.10625.1 vs. uniprot
Match: A0A401GQU1_9APHY (Uncharacterized protein n=3 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GQU1_9APHY)

HSP 1 Score: 174 bits (441), Expect = 7.640e-46
Identity = 104/267 (38.95%), Postives = 159/267 (59.55%), Query Frame = 1
Query:    1 LFKRKLKEDGSVACYKARLVDQGSSQVEDEDFFETSAPVARMSSLRAVFSLTAEHDFELEGIELDEAYLNAPVEEELFVKLPPEFSPFSRNIPFVRRLCKSLYGLKQSGGN*NNILDDFLSGEGLSCSTIDPCLYFSRGDGREKNLLVAVYVDDLVIAGRREKVDEFKHNISQRFRMKDLGSLSRMLGIEARRDRSNGTITISQGSYIREVVKRYGFDECRGVPTPVE-GNVKD-----SAPERKTTSNSTEYRGMVGSLMYASIGT 783
            +F+ K   +G +  YKARLV QG SQ+   DF +T APVA+++S+R + +L A HD+++  +++  AYLNA +EEE+F+K PP  +   +   +V  L  ++YGLKQSG      +   L   GLS S +D C+++   D     L++A+ VDD  IAG    V  FK  IS+RF M DLG +  +LGIE RRDR+  T+++SQ +YI  ++ R+  ++ + + TP+E G +       S P       +  YR  +GSLMYA++GT
Sbjct: 1009 VFRIKRNANGKIESYKARLVAQGFSQIPGIDFNDTFAPVAKLASIRIILALAARHDWDVHQMDVKGAYLNADLEEEIFMKQPPGQAKRGKEH-WVCLLRHAIYGLKQSGRQWFKKMCAALDEMGLSRSLVDHCVFYLDEDDDSVTLIIALSVDDTTIAGTNNAVLWFKTEISKRFEMTDLGEMHWILGIEVRRDRAARTLSLSQRAYIDGLMARFNLEDAKPLSTPLEPGAILSIRQCPSTPREFEDMRNVPYREAIGSLMYAALGT 1274          
BLAST of mRNA_H-paniculata_contig41294.10625.1 vs. uniprot
Match: A0A401GP19_9APHY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GP19_9APHY)

HSP 1 Score: 170 bits (430), Expect = 3.100e-45
Identity = 103/268 (38.43%), Postives = 160/268 (59.70%), Query Frame = 1
Query:    1 LFKRKLKEDGSVACYKARLVDQGSSQVEDEDFFETSAPVARMSSLRAVFSLTAEHDFELEGIELDEAYLNAPVEEELFVKLPP-EFSPFSRNIPFVRRLCKSLYGLKQSGGN*NNILDDFLSGEGLSCSTIDPCLYFSRGDGREKNLLVAVYVDDLVIAGRREKVDEFKHNISQRFRMKDLGSLSRMLGIEARRDRSNGTITISQGSYIREVVKRYGFDECRGVPTPVE-GNVKD-----SAPERKTTSNSTEYRGMVGSLMYASIGT 783
            +F+ K   +  +  YKARLV QG +QV   DF ET APVA+++S+  + +L A +D+EL  +++  AYLN  +EEE++++ PP +  P   ++  V RL + LYGLKQSG   +  +   L   GL+ S +D C+++ R +     LL+A+ VDD  IAG +  V  FK  IS RF+M DLG +  +LGIE +RDR   T+++SQ  YI  ++ R+   + + + TP++ G V       S P +     +  YR ++GSLMYA++GT
Sbjct:  161 VFRIKHNAEREIESYKARLVAQGFTQVPGIDFNETFAPVAKLASIHLILALAACYDWELHQMDVKGAYLNGDLEEEIYMQQPPGQAEPGKEHL--VCRLKRPLYGLKQSGRQFHKKISGELGSMGLTRSKVDHCVFWLRNEEDVLILLIALSVDDSTIAGTKAAVFWFKREISTRFKMSDLGEMHWILGIEVQRDRDVRTLSLSQHVYIDMILTRFNLQDAKSLTTPLDPGTVLSIHQCPSTPRQFEDMKNIPYREVIGSLMYAALGT 426          
BLAST of mRNA_H-paniculata_contig41294.10625.1 vs. uniprot
Match: A0A7M6DPI8_9CNID (Uncharacterized protein n=1 Tax=Clytia hemisphaerica TaxID=252671 RepID=A0A7M6DPI8_9CNID)

HSP 1 Score: 170 bits (431), Expect = 1.630e-44
Identity = 102/267 (38.20%), Postives = 162/267 (60.67%), Query Frame = 1
Query:    1 LFKRKLKEDGSVACYKARLVDQGSSQVEDEDFFETSAPVARMSSLRAVFSLTAEHDFELEGIELDEAYLNAPVEEELFVKLPPEFSPFSRNIPFVR-RLCKSLYGLKQSGGN*NNILDDFLSGEGLSCSTIDPCLY---FSRGDGREKNLLVAVYVDDLVIAGRREKV-DEFKHNISQRFRMKDLGSLSRMLGIEARRDRSNGTITISQGSYIREVVKRYGFDECRGVPTPVEGNVK-DSAPERKTTSNSTEYRGMVGSLMYASIGT 783
            +FK K   DG +   KARLV QG SQ    D+ +  APVA+ +S+R+V ++T E D EL  +++  A+LN  +EE++F+K P  F   +R+ P +  +L KS+YGLKQS    N  +D+FL   G + +  DPC+Y    ++GD +   L+VAVYVDDL+IA    ++  E K  + +RF M+D   +  +LG++ +RDR N  +TI Q +++  V+ R+  +EC+ V TP+E ++K +   + +      +Y+  +G L YASIGT
Sbjct:  825 VFKHKRGADGKIQRCKARLVAQGYSQKSGIDYNDVFAPVAKYNSIRSVLAITNELDLELHQMDVKTAFLNGDLEEDIFMKQPEGF--INRDNPNMACKLQKSIYGLKQSARCWNEKMDEFLKESGFTRNDADPCIYHKQITKGD-KSFTLIVAVYVDDLLIACNNIQILREQKQKLGERFEMEDKSEVHFILGMQVKRDRKNRRLTIDQNAFLSSVLNRFNMNECKPVATPLEPSMKFEKLADDEEIVKLKDYQSAIGCLTYASIGT 1088          
BLAST of mRNA_H-paniculata_contig41294.10625.1 vs. uniprot
Match: A0A7D9K6W0_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9K6W0_PARCT)

HSP 1 Score: 167 bits (424), Expect = 3.880e-44
Identity = 103/250 (41.20%), Postives = 151/250 (60.40%), Query Frame = 1
Query:   43 YKARLVDQGSSQVEDEDFFETSAPVARMSSLRAVFSLTAEHDFELEGIELDEAYLNAPVEEELFVKLPPEFSPFSRN-IPFVRRLCKSLYGLKQSGGN*NNILDDFLSGEGLSCSTIDPCLYFSRGDGREKNLLVAVYVDDLVIAGRR-EKVDEFKHNISQRFRMKDLGSLSRMLGIEARRDRSNGTITISQGSYIREVVKRYGFDECRGVPTP-VEGNVKDSAPERKTTSNSTEYRGMVGSLMYASIGT 783
            +KAR V +G SQ+ + D+ ET AP ARMSS+RA+     ++D  +  +++  AYLNAP++ EL+++ P  F     N    V +L KSLYGLKQSG N NN+L ++L  EG   S  DPC+Y    D + + ++V V+VDD++IA    E +   K ++ +RF+MKDLG LS  LG E +   S   I ++Q  YI +V+ ++G  +C+  PTP V G  K S  E  +  +  EYR +VGSL+Y   GT
Sbjct:  237 HKARYVAKGYSQIPEIDYQETFAPTARMSSIRALLQRVVQNDMIIHQMDVKTAYLNAPIDCELYMEQPEGFEEHGENGEKLVCKLNKSLYGLKQSGRNWNNLLHEYLQKEGFIQSQADPCVYVRMIDSK-RCVIVIVWVDDIIIAASHFELLTTVKESLGERFKMKDLGKLSWFLGTEFKCKES--CIEMNQKQYIEKVLLKFGMADCKPKPTPCVLGIEKVSDEESPSLKDPGEYRAIVGSLIYVMTGT 483          
BLAST of mRNA_H-paniculata_contig41294.10625.1 vs. uniprot
Match: A0A401GYH9_9APHY (Uncharacterized protein n=6 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GYH9_9APHY)

HSP 1 Score: 168 bits (426), Expect = 7.700e-44
Identity = 103/266 (38.72%), Postives = 155/266 (58.27%), Query Frame = 1
Query:    1 LFKRKLKEDGSVACYKARLVDQGSSQVEDEDFFETSAPVARMSSLRAVFSLTAEHDFELEGIELDEAYLNAPVEEELFVKLPPEFSPFSRNIPFVRRLCKSLYGLKQSGGN*NNILDDFLSGEGLSCSTIDPCLY-FSRGDGREKNLLVAVYVDDLVIAGRREKV-DEFKHNISQRFRMKDLGSLSRMLGIEARRDRSNGTITISQGSYIREVVKRYGFDECRGVPTPVEGNVKDSAPERKTTSNST---EYRGMVGSLMYASIGT 783
            +F+RK  ++G V  YKARLV QG SQ+   DF ET APV R+ S+RA+ +L   +++E+  +++  AYLN  ++EE++++ P  F   S  I    RL K+LYGLKQSG   N  L   L+  G      DPC+Y + R +G  +  ++ V+VDDL++     K+ +E K ++   F + DLG   +++GIE  RDR  G I ISQ  YI  ++KRY  +    V  P++ NV  +A +    ++      Y  MVGSLMYA++GT
Sbjct:  956 VFQRKTNKEGQVVKYKARLVAQGYSQIPGMDFLETFAPVVRLESIRAILALAVVNNWEIGQMDVKGAYLNGDLQEEIYMRQPEGFDDGSGRIC---RLRKTLYGLKQSGREWNRKLHRELTELGYKRLEADPCVYLWERKEGEVQ--IITVWVDDLLLFTNSPKLMEELKRDLQDLFEVTDLGEPQKIVGIEIERDREAGKIQISQQHYIESILKRYQLENANAVGMPLDPNVAFTAEDENEEADDRLAGGYASMVGSLMYAAVGT 1216          
BLAST of mRNA_H-paniculata_contig41294.10625.1 vs. uniprot
Match: A0A6S7HTI9_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 (Fragment) n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7HTI9_PARCT)

HSP 1 Score: 168 bits (425), Expect = 1.030e-43
Identity = 102/250 (40.80%), Postives = 152/250 (60.80%), Query Frame = 1
Query:   43 YKARLVDQGSSQVEDEDFFETSAPVARMSSLRAVFSLTAEHDFELEGIELDEAYLNAPVEEELFVKLPPEFSPFSRN-IPFVRRLCKSLYGLKQSGGN*NNILDDFLSGEGLSCSTIDPCLYFSRGDGREKNLLVAVYVDDLVIAGRR-EKVDEFKHNISQRFRMKDLGSLSRMLGIEARRDRSNGTITISQGSYIREVVKRYGFDECRGVPTP-VEGNVKDSAPERKTTSNSTEYRGMVGSLMYASIGT 783
            +KAR V +G SQ+ + D+ ET AP ARMSS+R +     ++D  +  +++  AYLNAP++ EL+++ P  F     N    V +L KSLYGLKQSG N NN+L ++L  EG + S  DPC+Y    D + + ++V V+VDD++IA    E +   K ++ +RF+MKDLG LS  LG E +  +S   I ++Q  YI +V+ ++G  +C+  PTP V G  K S  E  +  +  EYR +VGSL+Y   GT
Sbjct:  846 HKARYVAKGYSQIPEIDYQETFAPTARMSSIRTLLQRVVQNDMIIHQMDVKTAYLNAPIDCELYMEQPEGFEEHGENGEKLVCKLNKSLYGLKQSGRNWNNLLHEYLQKEGFTQSQADPCVYVRMIDSK-RCVIVIVWVDDIIIAASHFELLTTVKESLGERFKMKDLGKLSWFLGTEFKCKKS--CIEMNQKQYIEKVLLKFGMADCKPKPTPCVLGIEKVSDEESPSLEDPGEYRAIVGSLIYVMTGT 1092          
BLAST of mRNA_H-paniculata_contig41294.10625.1 vs. uniprot
Match: A0A6L2LWU7_TANCI (Zinc finger, CCHC-type n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A6L2LWU7_TANCI)

HSP 1 Score: 164 bits (414), Expect = 1.120e-43
Identity = 101/262 (38.55%), Postives = 155/262 (59.16%), Query Frame = 1
Query:    1 LFKRKLKEDGSVACYKARLVDQGSSQVEDEDFFETSAPVARMSSLRAVFSLTAEHDFELEGIELDEAYLNAPVEEELFVKLPPEFSPFSRNIPFVRRLCKSLYGLKQSGGN*NNILDDFLSGEGLSCSTIDPCLYFSRGDGREKNLLVAVYVDDLVIAGR-REKVDEFKHNISQRFRMKDLGSLSRMLGIEARRDRSNGTITISQGSYIREVVKRYGFDECRGVPTPVEGNVKDSAPERKTTSNSTEYRGMVGSLMYASIGT 783
            + KRK+K DGS+  YKARLV QG  + E  +FF+T APVAR++++R + +LTA HD  +  +++  A+LN  ++EE+++K P  F   S     V +L KSLYGLKQ+    +   D+ +   G S +  D C+Y SR D     +++ +YVDD++I G  +++VD+ K  +S +F MKDLG    +LGI  +R   N  I++SQ  YI +++ ++ F  C  V TPV+  V   +    T  +  EY   +G LMYA I T
Sbjct:  136 ILKRKIKVDGSIDKYKARLVIQGFRRKEGIEFFDTYAPVARITTIRLLLALTAIHDLVIHQMDVKTAFLNGDLDEEIYMKQPEGFV-MSGYENKVCKLKKSLYGLKQALKQWHQKFDEVVLSNGFSLNQADKCVY-SRFDDSGNGVIIYLYVDDMLIFGTDQDQVDKTKELLSSKFDMKDLGEAEVILGIRIKR--GNNGISVSQSHYIEKILAKFNFANCSPVSTPVDPTVMFRS-NNGTPVSQLEYSRAIGCLMYAMIST 392          
BLAST of mRNA_H-paniculata_contig41294.10625.1 vs. uniprot
Match: A0A8J6L8N4_TENMO (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Tenebrio molitor TaxID=7067 RepID=A0A8J6L8N4_TENMO)

HSP 1 Score: 167 bits (422), Expect = 2.560e-43
Identity = 97/273 (35.53%), Postives = 160/273 (58.61%), Query Frame = 1
Query:    1 LFKRKLKEDGSVACYKARLVDQGSSQVEDEDFFETSAPVARMSSLRAVFSLTAEHDFELEGIELDEAYLNAPVEEELFVKLPPEFSPFSRNIPFVRRLC---KSLYGLKQSGGN*NNILDDFLSGEGLSCSTIDPCLYF--SRGDGREKNLLVAVYVDDLVIAGRR-EKVDEFKHNISQRFRMKDLGSLSRMLGIEARRDRSNGTITISQGSYIREVVKRYGFDECRGVPTPVEGNVKDSAPERKTTSNSTE------YRGMVGSLMYASIGT 783
            + K KL  DG++A  KARLV +G +Q+   DF ET APV+R+ S+R + ++ A+++  +  ++   AYLN  ++EE++++LP   +     + F  ++C   K+LYGLKQSG      LD+ L    L   + D C+Y   +R    E  +L+AVYVDD++IA    E+++  K N+++ F+MKD+G +   LGIE    ++   +T+SQ  Y+ +++KR+G +  + V TP++ NVK S      T    E      Y+ ++GSLMY S+ T
Sbjct:  162 VLKTKLNSDGTIARRKARLVAKGYAQLPGIDFQETFAPVSRLCSVRLIMAIAAQYNLIVHQLDFVTAYLNGDIDEEIYMELPEGINEIGEEVVFKNKVCLLKKALYGLKQSGRQWYKKLDENLQKLNLRPLSTDKCIYMRKTRRGNEENMVLIAVYVDDIIIASNSMEEINNLKENLAKIFQMKDMGQIKYYLGIEFNVKKNK--VTMSQKKYVDDLLKRFGMENSKEVSTPMDPNVKLSKEMCPKTEKEKEEMTRCPYQNLIGSLMYLSVST 432          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig41294.10625.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A445HPU2_GLYSO4.630e-4739.92Retrovirus-related Pol polyprotein from transposon... [more]
A0A146H3U8_MYCCL5.910e-4740.67Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A401GQU1_9APHY7.640e-4638.95Uncharacterized protein n=3 Tax=Sparassis crispa T... [more]
A0A401GP19_9APHY3.100e-4538.43Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A7M6DPI8_9CNID1.630e-4438.20Uncharacterized protein n=1 Tax=Clytia hemisphaeri... [more]
A0A7D9K6W0_PARCT3.880e-4441.20Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A401GYH9_9APHY7.700e-4438.72Uncharacterized protein n=6 Tax=Sparassis crispa T... [more]
A0A6S7HTI9_PARCT1.030e-4340.80Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A6L2LWU7_TANCI1.120e-4338.55Zinc finger, CCHC-type n=1 Tax=Tanacetum cinerarii... [more]
A0A8J6L8N4_TENMO2.560e-4335.53Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig41294contigH-paniculata_contig41294:44..882 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score68.6
Seed ortholog evalue1.7e-09
Seed eggNOG ortholog35725.K2R9C2
Hectar predicted targeting categoryother localisation
EggNOG free text desc.retrotransposon
EggNOG OGs38DPC@33154,3NUZ7@4751,3QNZW@4890,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelAscomycota
Best eggNOG OGNA|NA|NA
Exons2
Model size783
Cds size255
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig41294.10625.1prot_H-paniculata_contig41294.10625.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig41294 44..354 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930259.5688088-CDS-H-paniculata_contig41294:43..1161622930259.5688088-CDS-H-paniculata_contig41294:43..116Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig41294 44..116 -
1691481214.2357097-CDS-H-paniculata_contig41294:43..1161691481214.2357097-CDS-H-paniculata_contig41294:43..116Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig41294 44..116 -
1622930259.5896957-CDS-H-paniculata_contig41294:172..3541622930259.5896957-CDS-H-paniculata_contig41294:172..354Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig41294 173..354 -
1691481214.2537055-CDS-H-paniculata_contig41294:172..3541691481214.2537055-CDS-H-paniculata_contig41294:172..354Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig41294 173..354 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930259.6149096-UTR-H-paniculata_contig41294:354..8821622930259.6149096-UTR-H-paniculata_contig41294:354..882Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig41294 355..882 -
1691481214.2686834-UTR-H-paniculata_contig41294:354..8821691481214.2686834-UTR-H-paniculata_contig41294:354..882Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig41294 355..882 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig41294.10625.1

>prot_H-paniculata_contig41294.10625.1 ID=prot_H-paniculata_contig41294.10625.1|Name=mRNA_H-paniculata_contig41294.10625.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=85bp
MKDLGSLSRMLGIEARRDRSNGTITISQGSYIREVVKRYGFDECRGVPTP
VEGNVKDSAPERKTTSNSTEYRGMVGSLMYASIGT
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mRNA from alignment at H-paniculata_contig41294:44..882-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig41294.10625.1 ID=mRNA_H-paniculata_contig41294.10625.1|Name=mRNA_H-paniculata_contig41294.10625.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=839bp|location=Sequence derived from alignment at H-paniculata_contig41294:44..882- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTTTTCAAGCGGAAACTGAAGGAGGATGGCAGTGTGGCATGCTACAAAGC GCGACTGGTGGATCAAGGTTCTTCACAGGTGGAGGATGAAGATTTCTTTG AAACCAGTGCCCCCGTAGCTCGCATGTCGAGTTTACGTGCTGTTTTCAGC CTGACTGCCGAACATGATTTCGAATTAGAAGGGATAGAATTAGATGAGGC GTATTTGAACGCCCCGGTAGAAGAAGAGCTGTTTGTTAAGCTACCCCCCG AGTTTTCCCCTTTCTCCCGAAACATACCGTTTGTGCGCCGCTTGTGTAAA AGCCTGTACGGCCTCAAGCAGAGCGGCGGAAACTGAAACAACATTCTTGA CGATTTTCTTTCTGGGGAAGGACTCAGCTGCTCCACTATCGACCCATGCT TGTACTTTTCCCGCGGCGATGGAAGAGAGAAAAACCTTCTGGTGGCCGTC TATGTCGACGACCTGGTCATTGCTGGCCGTCGTGAGAAAGTAGACGAGTT CAAGCATAACATAAGTCAGCGTTTTAGGATGAAAGACTTGGGCTCTCTCT CGCGCATGTTGGGAATAGAAGCACGACGTGACCGCTCTAACGGTACCATA ACCATCTCGCAGGGTAGCTACATCCGCGAGGTAGTAAAAAGATACGGTTT TGACGAGTGTCGAGGGGTACCCACCCCTGTAGAGGGAAACGTGAAGGATT CGGCACCCGAGTCGGCCGACAAGCCCTCCGAACAGAAGTCACTTGGGGCT GTACTGTCGGACATAGGCGCAAGACTACAAGCAACTCAACTGAGTACAGA GGCATGGTAGGATCACTCATGTACGCCTCGATAGGAACT
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Coding sequence (CDS) from alignment at H-paniculata_contig41294:44..882-

>mRNA_H-paniculata_contig41294.10625.1 ID=mRNA_H-paniculata_contig41294.10625.1|Name=mRNA_H-paniculata_contig41294.10625.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=510bp|location=Sequence derived from alignment at H-paniculata_contig41294:44..882- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAAGACTTGGGCTCTCTCTCGCGCATGTTGGGAATAGAAGCACGACG
TGACCGCTCTAACGGTACCATAACCATCTCGCAGGGTAGCTACATCCGCG
AGGTAGTAAAAAGATACGGTTTTGACGAGTGTCGAGGGGTACCCACCCCT
GTAGAGGGAAACGTGAAGGATTCGGCACCCGAATGAAAGACTTGGGCTCT
CTCTCGCGCATGTTGGGAATAGAAGCACGACGTGACCGCTCTAACGGTAC
CATAACCATCTCGCAGGGTAGCTACATCCGCGAGGTAGTAAAAAGATACG
GTTTTGACGAGTGTCGAGGGGTACCCACCCCTGTAGAGGGAAACGTGAAG
GATTCGGCACCCGAGCGCAAGACTACAAGCAACTCAACTGAGTACAGAGG
CATGGTAGGATCACTCATGTACGCCTCGATAGGAACTGCGCAAGACTACA
AGCAACTCAACTGAGTACAGAGGCATGGTAGGATCACTCATGTACGCCTC
GATAGGAACT
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