mRNA_H-paniculata_contig41294.10625.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig41294.10625.1 vs. uniprot
Match: A0A445HPU2_GLYSO (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Glycine soja TaxID=3848 RepID=A0A445HPU2_GLYSO) HSP 1 Score: 177 bits (450), Expect = 4.630e-47 Identity = 105/263 (39.92%), Postives = 163/263 (61.98%), Query Frame = 1
Query: 1 LFKRKLKEDGSVACYKARLVDQGSSQVEDEDFFETSAPVARMSSLRAVFSLTAEHDFELEGIELDEAYLNAPVEEELFVKLPPEF-SPFSRNIPFVRRLCKSLYGLKQSGGN*NNILDDFLSGEGLSCSTIDPCLYFSRGDGREKNLLVAVYVDDLVIAGR-REKVDEFKHNISQRFRMKDLGSLSRMLGIEARRDRSNGTITISQGSYIREVVKRYGFDECRGVPTPVEGNVKDSAPERKTTSNSTEYRGMVGSLMYASIGT 783
+F+RK+K DG+V YKARLV QG Q E DFF+T APVAR+S++R + +L A H+ + +++ A+LN ++EE+++K P F P + N V +L KSLYGLKQ+ + D+ + G + D CLY S+ D K +++ +YVDD++I G +++VDE K +S +F MKD+G +LGI+ +R N I+ISQ YI ++++++ F +C V TP++ N+K P + + EY +GSLMYA I T
Sbjct: 587 IFRRKMKVDGTVDKYKARLVIQGFRQKEGIDFFDTYAPVARISTIRLLLALAAIHNLMIHQMDVKTAFLNGELDEEIYMKQPEGFVMPGNENK--VCKLMKSLYGLKQAPKQWHQKFDEVVLSSGFVINQADKCLY-SKFDTHGKGVIICLYVDDMLIFGTDQDQVDETKAFLSSKFDMKDMGEADVILGIKIKR--GNNGISISQSHYIEKILEKFNFKDCSPVSTPIDPNLK-LLPNKGVAVSQLEYSRAIGSLMYAMIST 843
BLAST of mRNA_H-paniculata_contig41294.10625.1 vs. uniprot
Match: A0A146H3U8_MYCCL (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Mycena chlorophos TaxID=658473 RepID=A0A146H3U8_MYCCL) HSP 1 Score: 172 bits (436), Expect = 5.910e-47 Identity = 109/268 (40.67%), Postives = 158/268 (58.96%), Query Frame = 1
Query: 4 FKRKLKEDGSVACYKARLVDQGSSQVEDEDFFETSAPVARMSSLRAVFSLTAEHDFELEGIELDEAYLNAPVEEELFVKLPPEFSPFSRNIPFVRRLCKSLYGLKQSGGN*NNILDDFLSGEGLSCSTIDPCLYFSRGDGREKNLLVAVYVDDLVI-AGRREKVDEFKHNISQRFRMKDLGSLSRMLGIEARRDRSNGTITISQGSYIREVVKRYGFDECRGVPTPV--EGNVK-----DSAPERKTTSNSTEYRGMVGSLMYASIGT 783
+ +K E+G VA KARLV G+SQ+ D+ ET APV R+ SLRA +L A + E+ +++ AYLN ++EE+F++ PP F + V RL KSLYGL QSG N D + GL+ + D C+Y+ DG + + V V+VDDL+I A +++ + K + F MKDLG +++GIE RDRS GT+T+SQ YI ++ RYGF + GV TP+ + N K AP ++ + EY+ M+G LMYA+I T
Sbjct: 26 YVKKSDENGLVARLKARLVALGNSQIPGIDYTETYAPVVRLESLRAAIALAAIENLEMIQMDIRGAYLNGELKEEVFMQQPPGFEDGTGR---VWRLKKSLYGLHQSGREWNREFDQKVQTIGLTKTAADNCVYYRERDG--ERVWVTVWVDDLIILATSKDEGERVKKELDTLFEMKDLGEPRKIIGIEVTRDRSAGTVTLSQRHYIESLLDRYGFSDLNGVSTPLVPDANTKMRQLPKDAPPTAPSARA-EYQSMIGGLMYAAICT 287
BLAST of mRNA_H-paniculata_contig41294.10625.1 vs. uniprot
Match: A0A401GQU1_9APHY (Uncharacterized protein n=3 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GQU1_9APHY) HSP 1 Score: 174 bits (441), Expect = 7.640e-46 Identity = 104/267 (38.95%), Postives = 159/267 (59.55%), Query Frame = 1
Query: 1 LFKRKLKEDGSVACYKARLVDQGSSQVEDEDFFETSAPVARMSSLRAVFSLTAEHDFELEGIELDEAYLNAPVEEELFVKLPPEFSPFSRNIPFVRRLCKSLYGLKQSGGN*NNILDDFLSGEGLSCSTIDPCLYFSRGDGREKNLLVAVYVDDLVIAGRREKVDEFKHNISQRFRMKDLGSLSRMLGIEARRDRSNGTITISQGSYIREVVKRYGFDECRGVPTPVE-GNVKD-----SAPERKTTSNSTEYRGMVGSLMYASIGT 783
+F+ K +G + YKARLV QG SQ+ DF +T APVA+++S+R + +L A HD+++ +++ AYLNA +EEE+F+K PP + + +V L ++YGLKQSG + L GLS S +D C+++ D L++A+ VDD IAG V FK IS+RF M DLG + +LGIE RRDR+ T+++SQ +YI ++ R+ ++ + + TP+E G + S P + YR +GSLMYA++GT
Sbjct: 1009 VFRIKRNANGKIESYKARLVAQGFSQIPGIDFNDTFAPVAKLASIRIILALAARHDWDVHQMDVKGAYLNADLEEEIFMKQPPGQAKRGKEH-WVCLLRHAIYGLKQSGRQWFKKMCAALDEMGLSRSLVDHCVFYLDEDDDSVTLIIALSVDDTTIAGTNNAVLWFKTEISKRFEMTDLGEMHWILGIEVRRDRAARTLSLSQRAYIDGLMARFNLEDAKPLSTPLEPGAILSIRQCPSTPREFEDMRNVPYREAIGSLMYAALGT 1274
BLAST of mRNA_H-paniculata_contig41294.10625.1 vs. uniprot
Match: A0A401GP19_9APHY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GP19_9APHY) HSP 1 Score: 170 bits (430), Expect = 3.100e-45 Identity = 103/268 (38.43%), Postives = 160/268 (59.70%), Query Frame = 1
Query: 1 LFKRKLKEDGSVACYKARLVDQGSSQVEDEDFFETSAPVARMSSLRAVFSLTAEHDFELEGIELDEAYLNAPVEEELFVKLPP-EFSPFSRNIPFVRRLCKSLYGLKQSGGN*NNILDDFLSGEGLSCSTIDPCLYFSRGDGREKNLLVAVYVDDLVIAGRREKVDEFKHNISQRFRMKDLGSLSRMLGIEARRDRSNGTITISQGSYIREVVKRYGFDECRGVPTPVE-GNVKD-----SAPERKTTSNSTEYRGMVGSLMYASIGT 783
+F+ K + + YKARLV QG +QV DF ET APVA+++S+ + +L A +D+EL +++ AYLN +EEE++++ PP + P ++ V RL + LYGLKQSG + + L GL+ S +D C+++ R + LL+A+ VDD IAG + V FK IS RF+M DLG + +LGIE +RDR T+++SQ YI ++ R+ + + + TP++ G V S P + + YR ++GSLMYA++GT
Sbjct: 161 VFRIKHNAEREIESYKARLVAQGFTQVPGIDFNETFAPVAKLASIHLILALAACYDWELHQMDVKGAYLNGDLEEEIYMQQPPGQAEPGKEHL--VCRLKRPLYGLKQSGRQFHKKISGELGSMGLTRSKVDHCVFWLRNEEDVLILLIALSVDDSTIAGTKAAVFWFKREISTRFKMSDLGEMHWILGIEVQRDRDVRTLSLSQHVYIDMILTRFNLQDAKSLTTPLDPGTVLSIHQCPSTPRQFEDMKNIPYREVIGSLMYAALGT 426
BLAST of mRNA_H-paniculata_contig41294.10625.1 vs. uniprot
Match: A0A7M6DPI8_9CNID (Uncharacterized protein n=1 Tax=Clytia hemisphaerica TaxID=252671 RepID=A0A7M6DPI8_9CNID) HSP 1 Score: 170 bits (431), Expect = 1.630e-44 Identity = 102/267 (38.20%), Postives = 162/267 (60.67%), Query Frame = 1
Query: 1 LFKRKLKEDGSVACYKARLVDQGSSQVEDEDFFETSAPVARMSSLRAVFSLTAEHDFELEGIELDEAYLNAPVEEELFVKLPPEFSPFSRNIPFVR-RLCKSLYGLKQSGGN*NNILDDFLSGEGLSCSTIDPCLY---FSRGDGREKNLLVAVYVDDLVIAGRREKV-DEFKHNISQRFRMKDLGSLSRMLGIEARRDRSNGTITISQGSYIREVVKRYGFDECRGVPTPVEGNVK-DSAPERKTTSNSTEYRGMVGSLMYASIGT 783
+FK K DG + KARLV QG SQ D+ + APVA+ +S+R+V ++T E D EL +++ A+LN +EE++F+K P F +R+ P + +L KS+YGLKQS N +D+FL G + + DPC+Y ++GD + L+VAVYVDDL+IA ++ E K + +RF M+D + +LG++ +RDR N +TI Q +++ V+ R+ +EC+ V TP+E ++K + + + +Y+ +G L YASIGT
Sbjct: 825 VFKHKRGADGKIQRCKARLVAQGYSQKSGIDYNDVFAPVAKYNSIRSVLAITNELDLELHQMDVKTAFLNGDLEEDIFMKQPEGF--INRDNPNMACKLQKSIYGLKQSARCWNEKMDEFLKESGFTRNDADPCIYHKQITKGD-KSFTLIVAVYVDDLLIACNNIQILREQKQKLGERFEMEDKSEVHFILGMQVKRDRKNRRLTIDQNAFLSSVLNRFNMNECKPVATPLEPSMKFEKLADDEEIVKLKDYQSAIGCLTYASIGT 1088
BLAST of mRNA_H-paniculata_contig41294.10625.1 vs. uniprot
Match: A0A7D9K6W0_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9K6W0_PARCT) HSP 1 Score: 167 bits (424), Expect = 3.880e-44 Identity = 103/250 (41.20%), Postives = 151/250 (60.40%), Query Frame = 1
Query: 43 YKARLVDQGSSQVEDEDFFETSAPVARMSSLRAVFSLTAEHDFELEGIELDEAYLNAPVEEELFVKLPPEFSPFSRN-IPFVRRLCKSLYGLKQSGGN*NNILDDFLSGEGLSCSTIDPCLYFSRGDGREKNLLVAVYVDDLVIAGRR-EKVDEFKHNISQRFRMKDLGSLSRMLGIEARRDRSNGTITISQGSYIREVVKRYGFDECRGVPTP-VEGNVKDSAPERKTTSNSTEYRGMVGSLMYASIGT 783
+KAR V +G SQ+ + D+ ET AP ARMSS+RA+ ++D + +++ AYLNAP++ EL+++ P F N V +L KSLYGLKQSG N NN+L ++L EG S DPC+Y D + + ++V V+VDD++IA E + K ++ +RF+MKDLG LS LG E + S I ++Q YI +V+ ++G +C+ PTP V G K S E + + EYR +VGSL+Y GT
Sbjct: 237 HKARYVAKGYSQIPEIDYQETFAPTARMSSIRALLQRVVQNDMIIHQMDVKTAYLNAPIDCELYMEQPEGFEEHGENGEKLVCKLNKSLYGLKQSGRNWNNLLHEYLQKEGFIQSQADPCVYVRMIDSK-RCVIVIVWVDDIIIAASHFELLTTVKESLGERFKMKDLGKLSWFLGTEFKCKES--CIEMNQKQYIEKVLLKFGMADCKPKPTPCVLGIEKVSDEESPSLKDPGEYRAIVGSLIYVMTGT 483
BLAST of mRNA_H-paniculata_contig41294.10625.1 vs. uniprot
Match: A0A401GYH9_9APHY (Uncharacterized protein n=6 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GYH9_9APHY) HSP 1 Score: 168 bits (426), Expect = 7.700e-44 Identity = 103/266 (38.72%), Postives = 155/266 (58.27%), Query Frame = 1
Query: 1 LFKRKLKEDGSVACYKARLVDQGSSQVEDEDFFETSAPVARMSSLRAVFSLTAEHDFELEGIELDEAYLNAPVEEELFVKLPPEFSPFSRNIPFVRRLCKSLYGLKQSGGN*NNILDDFLSGEGLSCSTIDPCLY-FSRGDGREKNLLVAVYVDDLVIAGRREKV-DEFKHNISQRFRMKDLGSLSRMLGIEARRDRSNGTITISQGSYIREVVKRYGFDECRGVPTPVEGNVKDSAPERKTTSNST---EYRGMVGSLMYASIGT 783
+F+RK ++G V YKARLV QG SQ+ DF ET APV R+ S+RA+ +L +++E+ +++ AYLN ++EE++++ P F S I RL K+LYGLKQSG N L L+ G DPC+Y + R +G + ++ V+VDDL++ K+ +E K ++ F + DLG +++GIE RDR G I ISQ YI ++KRY + V P++ NV +A + ++ Y MVGSLMYA++GT
Sbjct: 956 VFQRKTNKEGQVVKYKARLVAQGYSQIPGMDFLETFAPVVRLESIRAILALAVVNNWEIGQMDVKGAYLNGDLQEEIYMRQPEGFDDGSGRIC---RLRKTLYGLKQSGREWNRKLHRELTELGYKRLEADPCVYLWERKEGEVQ--IITVWVDDLLLFTNSPKLMEELKRDLQDLFEVTDLGEPQKIVGIEIERDREAGKIQISQQHYIESILKRYQLENANAVGMPLDPNVAFTAEDENEEADDRLAGGYASMVGSLMYAAVGT 1216
BLAST of mRNA_H-paniculata_contig41294.10625.1 vs. uniprot
Match: A0A6S7HTI9_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 (Fragment) n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7HTI9_PARCT) HSP 1 Score: 168 bits (425), Expect = 1.030e-43 Identity = 102/250 (40.80%), Postives = 152/250 (60.80%), Query Frame = 1
Query: 43 YKARLVDQGSSQVEDEDFFETSAPVARMSSLRAVFSLTAEHDFELEGIELDEAYLNAPVEEELFVKLPPEFSPFSRN-IPFVRRLCKSLYGLKQSGGN*NNILDDFLSGEGLSCSTIDPCLYFSRGDGREKNLLVAVYVDDLVIAGRR-EKVDEFKHNISQRFRMKDLGSLSRMLGIEARRDRSNGTITISQGSYIREVVKRYGFDECRGVPTP-VEGNVKDSAPERKTTSNSTEYRGMVGSLMYASIGT 783
+KAR V +G SQ+ + D+ ET AP ARMSS+R + ++D + +++ AYLNAP++ EL+++ P F N V +L KSLYGLKQSG N NN+L ++L EG + S DPC+Y D + + ++V V+VDD++IA E + K ++ +RF+MKDLG LS LG E + +S I ++Q YI +V+ ++G +C+ PTP V G K S E + + EYR +VGSL+Y GT
Sbjct: 846 HKARYVAKGYSQIPEIDYQETFAPTARMSSIRTLLQRVVQNDMIIHQMDVKTAYLNAPIDCELYMEQPEGFEEHGENGEKLVCKLNKSLYGLKQSGRNWNNLLHEYLQKEGFTQSQADPCVYVRMIDSK-RCVIVIVWVDDIIIAASHFELLTTVKESLGERFKMKDLGKLSWFLGTEFKCKKS--CIEMNQKQYIEKVLLKFGMADCKPKPTPCVLGIEKVSDEESPSLEDPGEYRAIVGSLIYVMTGT 1092
BLAST of mRNA_H-paniculata_contig41294.10625.1 vs. uniprot
Match: A0A6L2LWU7_TANCI (Zinc finger, CCHC-type n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A6L2LWU7_TANCI) HSP 1 Score: 164 bits (414), Expect = 1.120e-43 Identity = 101/262 (38.55%), Postives = 155/262 (59.16%), Query Frame = 1
Query: 1 LFKRKLKEDGSVACYKARLVDQGSSQVEDEDFFETSAPVARMSSLRAVFSLTAEHDFELEGIELDEAYLNAPVEEELFVKLPPEFSPFSRNIPFVRRLCKSLYGLKQSGGN*NNILDDFLSGEGLSCSTIDPCLYFSRGDGREKNLLVAVYVDDLVIAGR-REKVDEFKHNISQRFRMKDLGSLSRMLGIEARRDRSNGTITISQGSYIREVVKRYGFDECRGVPTPVEGNVKDSAPERKTTSNSTEYRGMVGSLMYASIGT 783
+ KRK+K DGS+ YKARLV QG + E +FF+T APVAR++++R + +LTA HD + +++ A+LN ++EE+++K P F S V +L KSLYGLKQ+ + D+ + G S + D C+Y SR D +++ +YVDD++I G +++VD+ K +S +F MKDLG +LGI +R N I++SQ YI +++ ++ F C V TPV+ V + T + EY +G LMYA I T
Sbjct: 136 ILKRKIKVDGSIDKYKARLVIQGFRRKEGIEFFDTYAPVARITTIRLLLALTAIHDLVIHQMDVKTAFLNGDLDEEIYMKQPEGFV-MSGYENKVCKLKKSLYGLKQALKQWHQKFDEVVLSNGFSLNQADKCVY-SRFDDSGNGVIIYLYVDDMLIFGTDQDQVDKTKELLSSKFDMKDLGEAEVILGIRIKR--GNNGISVSQSHYIEKILAKFNFANCSPVSTPVDPTVMFRS-NNGTPVSQLEYSRAIGCLMYAMIST 392
BLAST of mRNA_H-paniculata_contig41294.10625.1 vs. uniprot
Match: A0A8J6L8N4_TENMO (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Tenebrio molitor TaxID=7067 RepID=A0A8J6L8N4_TENMO) HSP 1 Score: 167 bits (422), Expect = 2.560e-43 Identity = 97/273 (35.53%), Postives = 160/273 (58.61%), Query Frame = 1
Query: 1 LFKRKLKEDGSVACYKARLVDQGSSQVEDEDFFETSAPVARMSSLRAVFSLTAEHDFELEGIELDEAYLNAPVEEELFVKLPPEFSPFSRNIPFVRRLC---KSLYGLKQSGGN*NNILDDFLSGEGLSCSTIDPCLYF--SRGDGREKNLLVAVYVDDLVIAGRR-EKVDEFKHNISQRFRMKDLGSLSRMLGIEARRDRSNGTITISQGSYIREVVKRYGFDECRGVPTPVEGNVKDSAPERKTTSNSTE------YRGMVGSLMYASIGT 783
+ K KL DG++A KARLV +G +Q+ DF ET APV+R+ S+R + ++ A+++ + ++ AYLN ++EE++++LP + + F ++C K+LYGLKQSG LD+ L L + D C+Y +R E +L+AVYVDD++IA E+++ K N+++ F+MKD+G + LGIE ++ +T+SQ Y+ +++KR+G + + V TP++ NVK S T E Y+ ++GSLMY S+ T
Sbjct: 162 VLKTKLNSDGTIARRKARLVAKGYAQLPGIDFQETFAPVSRLCSVRLIMAIAAQYNLIVHQLDFVTAYLNGDIDEEIYMELPEGINEIGEEVVFKNKVCLLKKALYGLKQSGRQWYKKLDENLQKLNLRPLSTDKCIYMRKTRRGNEENMVLIAVYVDDIIIASNSMEEINNLKENLAKIFQMKDMGQIKYYLGIEFNVKKNK--VTMSQKKYVDDLLKRFGMENSKEVSTPMDPNVKLSKEMCPKTEKEKEEMTRCPYQNLIGSLMYLSVST 432 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig41294.10625.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig41294.10625.1 >prot_H-paniculata_contig41294.10625.1 ID=prot_H-paniculata_contig41294.10625.1|Name=mRNA_H-paniculata_contig41294.10625.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=85bp MKDLGSLSRMLGIEARRDRSNGTITISQGSYIREVVKRYGFDECRGVPTPback to top mRNA from alignment at H-paniculata_contig41294:44..882- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig41294.10625.1 ID=mRNA_H-paniculata_contig41294.10625.1|Name=mRNA_H-paniculata_contig41294.10625.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=839bp|location=Sequence derived from alignment at H-paniculata_contig41294:44..882- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig41294:44..882- >mRNA_H-paniculata_contig41294.10625.1 ID=mRNA_H-paniculata_contig41294.10625.1|Name=mRNA_H-paniculata_contig41294.10625.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=510bp|location=Sequence derived from alignment at H-paniculata_contig41294:44..882- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |